pypi: stats | Projects | Ecosyste.ms: Papers

10.3389/fpls.2017.01160

Repeated Stand-Replacing Crown Fires Affect Seed Morphology and Germination in Aleppo pine
Cited by: 7
Author(s): Antonio Saracino, Alessandro Bellino, Emilia Allevato, Antonio Mingo, Stefano Conti, Sergio Rossi, Giuliano Bonanomi, Domenico Carputo, Stefano Mazzoleni
Software Mentions: 9
Published: over 9 years ago

10.1093/gigascience/giy083

Clustering trees: a visualization for evaluating clusterings at multiple resolutions
Cited by: 353
Author(s): Luke Zappia, Alicia Oshlack
Software Mentions: 9
Published: over 8 years ago

10.3390/ijms21093139

The Dark Side of Orchid Symbiosis: Can Tulasnella calospora Decompose Host Tissues?
Cited by: 21
Author(s): Martino Adamo, Matteo Chialva, Jacopo Calevo, Silvia De Rose, Mariangela Girlanda, Silvia Perotto, Raffaella Balestrini
Software Mentions: 9
Published: over 6 years ago

10.1186/1471-2105-11-503

Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering
Cited by: 54
Author(s): Eva Freyhult, Mattias Landfors, Jenny Önskog, Torgeir R. Hvidsten, Patrik Rydén
Software Mentions: 9
Published: almost 16 years ago

10.1186/s13073-020-00731-8

Integrative -omics and HLA-ligandomics analysis to identify novel drug targets for ccRCC immunotherapy
Cited by: 28
Author(s): Anna Reustle, Moreno Di Marco, Carolin Meyerhoff, Annika Nelde, Juliane S. Walz, Stefan Winter, Siahei Kandabarau, Florian Büttner, Mathias Haag, Linus Backert, Daniel J. Kowalewski, Steffen Rausch, Jörg Hennenlotter, Viktoria Stühler, Marcus Scharpf, Falko Fend, Arnulf Stenzl, Hans‐Georg Rammensee, Jens Bedke, Stefan Stevanović, Matthias Schwab, Elke Schaeffeler
Software Mentions: 9
Published: over 6 years ago

10.3390/ijms21145044

Epigenome Wide Association and Stochastic Epigenetic Mutation Analysis on Cord Blood of Preterm Birth
Cited by: 10
Author(s): Elena Spada, Luciano Calzari, Luigi Corsaro, Teresa Fazia, Monica Mencarelli, Anna Maria Di Blasio, Luisa Bernardinelli, G. Zangheri, Michele Vignali, Davide Gentilini
Software Mentions: 9
Published: about 6 years ago

10.3389/fonc.2021.698856

A Novel Ferroptosis-Related Gene Model for Overall Survival Predictions of Bladder Urothelial Carcinoma Patients
Cited by: 9
Author(s): Min Zhang, Xin Zhang, Minghang Yu, Wei Zhang, Di Zhang, Song Zeng, Xi Wang, Xiaosong Hu
Software Mentions: 9
Published: about 5 years ago

10.1016/j.celrep.2019.01.041

RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types
Cited by: 510
Author(s): Gianni Monaco, Bernett Lee, Weili Xu, Seri Mustafah, You Yi Hwang, Christophe Carré, Nicolas Burdin, Lucian Visan, Michele Ceccarelli, Michael Poidinger, Alfred Zippelius, João Pedro de Magalhães, Anis Larbi
Software Mentions: 9
Published: over 7 years ago

10.1128/mSystems.00081-18

Epstein-Barr Virus-Positive Cancers Show Altered B-Cell Clonality
Cited by: 16
Author(s): Sara R. Selitsky, David Marron, Lisle E. Mose, Joel S. Parker, Dirk P. Dittmer
Software Mentions: 9
Published: almost 8 years ago

10.3390/cancers12051076

Tumor-Infiltrating CD8 T Cells Predict Clinical Breast Cancer Outcomes in Young Women
Cited by: 31
Author(s): Yong Won Jin, Pingzhao Hu
Software Mentions: 9
Published: over 6 years ago

10.1186/s12864-019-5870-3

Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods
Cited by: 56
Author(s): Carrie Wright, Anandita Rajpurohit, Emily E. Burke, Courtney Williams, Leonardo Collado‐Torres, Martha Kimos, Nicholas J. Brandon, A.J. Cross, Daniel R. Weinberger, Joo Heon Shin
Software Mentions: 9
Published: over 7 years ago

10.1371/journal.ppat.1009577

Epigenomic regulation of human T-cell leukemia virus by chromatin-insulator CTCF
Cited by: 11
Author(s): Xiaogang Cheng, Ancy Joseph, Victor Castro, Alice Chen-Liaw, Zachary L. Skidmore, Takaharu Ueno, Jun–ichi Fujisawa, Daniel A. Rauch, Grant A. Challen, Michael P. Martinez, Patrick Green, Malachi Griffith, Jacqueline E. Payton, John Edwards, Lee Ratner
Software Mentions: 9
Published: over 5 years ago

10.3389/fninf.2021.561689

QDECR: A Flexible, Extensible Vertex-Wise Analysis Framework in R
Cited by: 13
Author(s): Sander Lamballais, Ryan L. Muetzel
Software Mentions: 9
Published: over 5 years ago

10.1186/s13073-021-00902-1

Integrative statistical analyses of multiple liquid biopsy analytes in metastatic breast cancer
Cited by: 16
Author(s): Corinna Keup, Vinay Suryaprakash, Siegfried Hauch, Markus Storbeck, Peter F. Hahn, Markus Sprenger-Haussels, Hans‐Christian Kolberg, Mitra Tewes, Oliver Hoffmann, Rainer Kimmig, Sabine Kasimir‐Bauer
Software Mentions: 9
Published: over 5 years ago

10.3390/ijms22073411

Insights of Phenolic Pathway in Fruits: Transcriptional and Metabolic Profiling in Apricot (Prunus armeniaca)
Cited by: 6
Author(s): Helena Gómez-Martínez, Francisco Gil-Muñoz, Almudena Bermejo, Elena Zuriaga, M. L. Badenes
Software Mentions: 9
Published: over 5 years ago

10.1371/journal.pone.0240462

The origins of money: Calculation of similarity indexes demonstrates the earliest development of commodity money in prehistoric Central Europe
Cited by: 11
Author(s): Maikel H.G. Kuijpers, Cătălin Nicolae Popa
Software Mentions: 9
Published: over 5 years ago

10.1128/mSystems.00298-20

Coupling Bacterial Community Assembly to Microbial Metabolism across Soil Profiles
Cited by: 72
Author(s): Lu Luan, Chao Liang, Lijun Chen, Haotian Wang, Qinsong Xu, Yuji Jiang, Bo Sun
Software Mentions: 9
Published: over 6 years ago

10.3390/microorganisms8010038

Tomato RNA-seq Data Mining Reveals the Taxonomic and Functional Diversity of Root-Associated Microbiota
Cited by: 13
Author(s): Matteo Chialva, Stefano Ghignone, Mara Novero, Wael N. Hozzein, Luisa Lanfranco, Paola Bonfante
Software Mentions: 9
Published: almost 7 years ago

10.15252/msb.20198849

High‐fat diet in a mouse insulin‐resistant model induces widespread rewiring of the phosphotyrosine signaling network
Cited by: 24
Author(s): Antje Dittmann, Norman J. Kennedy, Nina L Soltero, Nader Morshed, Miyeko Mana, Ömer H. Yılmaz, Roger J. Davis, Forest M. White
Software Mentions: 9
Published: about 7 years ago

10.1038/s41598-020-71521-w

Direct formalin fixation induces widespread transcriptomic effects in archival tissue samples
Cited by: 9
Author(s): Leah C. Wehmas, Susan Hester, Charles E. Wood
Software Mentions: 9
Published: about 6 years ago

10.1038/s41598-021-96160-7

Wolves, dogs and humans in regular contact can mutually impact each other’s skin microbiota
Cited by: 6
Author(s): Stefanie U. Wetzels, Cameron Strachan, Beate Conrady, Martin Wagner, Iwan Burgener, Zsófia Virányi, Evelyne Selberherr
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-021-99046-w

Using fecal immunochemical tubes for the analysis of the gut microbiome has the potential to improve colorectal cancer screening
Cited by: 7
Author(s): Kertu Liis Krigul, Oliver Aasmets, Kreete Lüll, Tõnis Org, Elin Org
Software Mentions: 8
Published: about 5 years ago

10.3390/ani10050889

Combination of Bacillus licheniformis and Salinomycin: Effect on the Growth Performance and GIT Microbial Populations of Broiler Chickens
Cited by: 15
Author(s): Jacek Trela, Bartosz Kierończyk, Veerle Hautekiet, Damian Józefiak
Software Mentions: 8
Published: over 6 years ago

10.3389/fmicb.2021.676615

Attributes of Drying Define the Structure and Functioning of Microbial Communities in Temperate Riverbed Sediment
Cited by: 7
Author(s): José Schreckinger, Michael Mutz, Clara Mendoza‐Lera, Aline Frossard
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-021-91559-8

Uridine and pyruvate protect T cells’ proliferative capacity from mitochondrial toxic antibiotics: a clinical pilot study
Cited by: 8
Author(s): Stefano Battaglia, Stefania De Santis, Monica Rutigliano, Fabio Sallustio, Angela Picerno, Maria Antonia Frassanito, Ingo Schaefer, Angelo Vacca, Antonio Moschetta, Peter Seibel, Michele Battaglia, Gaetano Villani
Software Mentions: 8
Published: over 5 years ago

10.1038/s41375-020-01096-y

Copy number evolution and its relationship with patient outcome—an analysis of 178 matched presentation-relapse tumor pairs from the Myeloma XI trial
Cited by: 21
Author(s): James Croft, Sidra Ellis, Amy L. Sherborne, Kim A. Sharp, Amy Price, Matthew Jenner, Mark T. Drayson, Roger G. Owen, Sally Chown, Jindriska Lindsay, Kamaraj Karunanithi, Hannah Hunter, Walter M. Gregory, Faith E. Davies, Gareth J. Morgan, Gordon Cook, Lilit Atanesyan, Suvi Savola, David A. Cairns, Graham Jackson, Richard S. Houlston, Martin Kaiser
Software Mentions: 8
Published: almost 6 years ago

10.1038/s41598-021-92658-2

Profiling temporal dynamics of acetogenic communities in anaerobic digesters using next-generation sequencing and T-RFLP
Cited by: 10
Author(s): Abhijeet Singh, Bettina Müller, Anna Schnürer
Software Mentions: 8
Published: over 5 years ago

10.1186/s12864-015-2319-1

Global expression differences and tissue specific expression differences in rice evolution result in two contrasting types of differentially expressed genes
Cited by: 3
Author(s): Youko Horiuchi, Yoshiaki Harushima, Hironori Fujisawa, Takako Mochizuki, Masahiro Fujita, Hajime Ohyanagi, Nori Kurata
Software Mentions: 8
Published: almost 11 years ago

10.1002/1878-0261.12139

Transcription instability in high-risk neuroblastoma is associated with a global perturbation of chromatin domains
Cited by: 4
Author(s): Carlo Zanon, Gian Paolo Tonini
Software Mentions: 8
Published: almost 9 years ago

10.3389/fmicb.2021.644828

The Cheese Production Facility Microbiome Exhibits Temporal and Spatial Variability
Cited by: 12
Author(s): Jared Johnson, Chris Curtin, Joy Waite‐Cusic
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2015.01269

Prokaryotes in Subsoil—Evidence for a Strong Spatial Separation of Different Phyla by Analysing Co-occurrence Networks
Cited by: 39
Author(s): Marie Uksa, Michael Schloter, David Endesfelder, Susanne Kublik, Marion Engel, Timo Kautz, Ulrich Köpke, Doreen Fischer
Software Mentions: 8
Published: almost 11 years ago

10.1038/s41598-020-80881-2

Comprehensive analysis of metastatic gastric cancer tumour cells using single-cell RNA-seq
Cited by: 24
Author(s): Bin Wang, Yingyi Zhang, Tao Qing, Kaichen Xing, Jie Li, Timing Zhen, Sibo Zhu, Xi Zhan
Software Mentions: 8
Published: over 5 years ago

10.3389/fimmu.2018.00462

Analyzing Immunoglobulin Repertoires
Cited by: 77
Author(s): Neha Chaudhary, Duane R. Wesemann
Software Mentions: 8
Published: over 8 years ago

10.1093/bib/bbaa290

NetCoMi: network construction and comparison for microbiome data in R
Cited by: 165
Author(s): Stefanie Peschel, Christian L. Müller, Erika von Mutius, Anne‐Laure Boulesteix, Martin Depner
Software Mentions: 8
Published: almost 6 years ago

10.1038/s41598-020-75541-4

Stromal microenvironment promoted infiltration in esophageal adenocarcinoma and squamous cell carcinoma: a multi-cohort gene-based analysis
Cited by: 6
Author(s): Jiali Li, Zhao-Yi Zeng, Xueping Jiang, Nannan Zhang, Yanping Gao, Yuan Luo, Wenjie Sun, Shuying Li, Jiangbo Ren, Yan Gong, Conghua Xie
Software Mentions: 8
Published: almost 6 years ago

10.1371/journal.pone.0206077

Demographic characteristics of an avian predator, Louisiana Waterthrush (Parkesia motacilla), in response to its aquatic prey in a Central Appalachian USA watershed impacted by shale gas development
Cited by: 6
Author(s): Mack W. Frantz, Petra Bohall Wood, George T. Merovich
Software Mentions: 8
Published: almost 8 years ago

10.1371/journal.pone.0220926

Gut microbiome shifts with urbanization and potentially facilitates a zoonotic pathogen in a wading bird
Cited by: 50
Author(s): Maureen H. Murray, Emily W. Lankau, Anjelika D. Kidd, Catharine N. Welch, Taylor Ellison, Henry Adams, Erin K. Lipp, Sonia M. Hernández
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0183264

The transcriptional profiling of human in vivo-generated plasma cells identifies selective imbalances in monoclonal gammopathies
Cited by: 12
Author(s): Luis M. Valor, Beatriz Rodrı́guez-Bayona, Ana Ramos-Amaya, José A. Brieva, Antonio Campos‐Caro
Software Mentions: 8
Published: about 9 years ago

10.1371/journal.pone.0234537

Prairie plants harbor distinct and beneficial root-endophytic bacterial communities
Cited by: 0
Author(s): Boahemaa Adu-Oppong, Scott A. Mangan, Cláudia Stein, Christopher P. Catano, Jonathan A. Myers, Gautam Dantas
Software Mentions: 8
Published: over 6 years ago

10.3389/fgene.2019.01221

Increased Adaptive Variation Despite Reduced Overall Genetic Diversity in a Rapidly Adapting Invader
Cited by: 39
Author(s): D. Selechnik, Mark F. Richardson, Richard Shine, Jayna L. DeVore, Simon Ducatez, Lee A. Rollins
Software Mentions: 8
Published: almost 7 years ago

10.1038/s41598-020-66567-9

Texture features explain the susceptibility of grapevine cultivars to Drosophila suzukii (Diptera: Drosophilidae) infestation in ripening and drying grapes
Cited by: 14
Author(s): Lorenzo Tonina, Folco Giomi, Manuel Sancassani, M. Ajelli, Nicola Mori, L. Giongo
Software Mentions: 8
Published: over 6 years ago

10.1038/srep30086

Random Bits Forest: a Strong Classifier/Regressor for Big Data
Cited by: 22
Author(s): Yi Wang, Li Yi, Weilin Pu, Kathryn Wen, Yin Yao Shugart, Momiao Xiong, Li Jin
Software Mentions: 8
Published: about 10 years ago

10.3390/microorganisms9020378

Differences in the Concentration of the Fecal Neurotransmitters GABA and Glutamate Are Associated with Microbial Composition among Healthy Human Subjects
Cited by: 18
Author(s): Hend Altaib, Kohei Nakamura, Mayuko Abe, Yassien Badr, Emiko Yanase, Izumi Nomura, Tomohiko Suzuki
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0206662

Predicting hospital and emergency department utilization among community-dwelling older adults: Statistical and machine learning approaches
Cited by: 15
Author(s): Aaron Jones, Andrew P. Costa, Angelina Pesevski, Paul D. McNicholas
Software Mentions: 8
Published: almost 8 years ago

10.1186/s13058-018-1022-y

Clonal relatedness in tumour pairs of breast cancer patients
Cited by: 14
Author(s): Jana Biermann, Toshima Z. Parris, Szilárd Nemes, Anna Danielsson, Hanna Engqvist, Elisabeth Werner Rönnerman, Eva Forssell-Aronsson, Anikó Kovács, Per Karlsson, Khalil Helou
Software Mentions: 8
Published: about 8 years ago

10.1098/rspb.2020.1158

Parasite infection disrupts escape behaviours in fish shoals
Cited by: 3
Author(s): Nicolle Demandt, Marit Praetz, Ralf H. J. M. Kurvers, Jens Krause, Joachim Kurtz, Jörn P. Scharsack
Software Mentions: 8
Published: almost 6 years ago

10.1002/ece3.4442

Females know better: Sex-biased habitat selection by the European wildcat
Cited by: 25
Author(s): Teresa Martins de Oliveira, Fermín Urra, José María López‐Martín, Elena Ballesteros‐Duperón, José Miguel Barea‐Azcón, Marcos Moleón, José María Gil‐Sánchez, Paulo C. Alves, Francisco Díaz‐Ruíz, Pablo Ferreras, Pedro Monterroso
Software Mentions: 8
Published: about 8 years ago

10.1186/s12870-020-02739-z

Candidate genes and SNPs associated with stomatal conductance under drought stress in Vitis
Cited by: 7
Author(s): Massimiliano Trenti, Silvia Lorenzi, P. Bianchedi, Daniele Grossi, O. Failla, M. S. Grando, F. Emanuelli
Software Mentions: 8
Published: over 5 years ago

10.3390/jcm9113569

Seroprevalence of SARS-CoV-2 IgG Antibodies in Corsica (France), April and June 2020
Cited by: 11
Author(s): Lisandru Capai, Nazlı Ayhan, Shirley Masse, Jean Canarelli, Stéphane Priet, Marie-Hélène Simeoni, Rémi N. Charrel, Xavier de Lamballerie, Alessandra Falchi
Software Mentions: 8
Published: almost 6 years ago

10.1002/ece3.5289

Disturbance history mediates climate change effects on subtropical forest biomass and dynamics
Cited by: 16
Author(s): Alexandre F. Souza, Solon Jonas Longhi
Software Mentions: 8
Published: over 7 years ago

10.1002/ece3.6913

Changes in beta diversity and species functional traits differ between saplings and mature trees in an old‐growth forest
Cited by: 1
Author(s): David Anthony Kirk, Marie‐Hélène Brice, Michael S. W. Bradstreet, Ken A. Elliott
Software Mentions: 8
Published: almost 6 years ago

10.1186/s12866-021-02222-1

Patterns of yeast diversity distribution and its drivers in rhizosphere soil of Hami melon orchards in different regions of Xinjiang
Cited by: 7
Author(s): Shanshan Zhu, Yonghui Lei, Chong Wang, Yu‐Mei Wei, Chuncheng Wang, Yanfei Sun
Software Mentions: 8
Published: over 5 years ago

10.3390/ani10112127

Vultures and Livestock: The Where, When, and Why of Visits to Farms
Cited by: 6
Author(s): Marina García‐Alfonso, Thijs van Overveld, Laura Gangoso, David Serrano, José A. Donázar
Software Mentions: 8
Published: almost 6 years ago

10.3390/jcm10010111

Evaluating the Effect of Topical Atropine Use for Myopia Control on Intraocular Pressure by Using Machine Learning
Cited by: 19
Author(s): Tzu-En Wu, Hsin‐An Chen, Mao-Jhen Jhou, Yen-Ning Chen, Ting-Jen Chang, Chi-Jie Lu
Software Mentions: 8
Published: almost 6 years ago

10.1002/ece3.6390

Can ancestry and morphology be used as surrogates for species niche relationships?
Cited by: 5
Author(s): Friedrich W. Keppeler, Kirk O. Winemiller
Software Mentions: 8
Published: over 6 years ago

10.3389/fonc.2020.00832

Diagnostic Value of Combinatorial Markers in Colorectal Carcinoma
Cited by: 7
Author(s): Veronika Voronova, Petr Glybochko, Andrey Svistunov, В В Фомин, Philipp Kopylov, Peter Tzarkov, А. В. Егоров, E. P. Gitel, А. А. Рагимов, Alexander Boroda, Elena Poddubskaya, Marina Sekacheva
Software Mentions: 8
Published: over 6 years ago

10.3390/insects12080701

Anthonomus rubi on Strawberry Fruit: Its Biology, Ecology, Damage, and Control from an IPM Perspective
Cited by: 5
Author(s): Lorenzo Tonina, Giulia Zanettin, Paolo Miorelli, Simone Puppato, Andrew G. S. Cuthbertson, A. Grassi
Software Mentions: 8
Published: about 5 years ago

10.1038/s42003-021-02509-z

Species diversity and food web structure jointly shape natural biological control in agricultural landscapes
Cited by: 10
Author(s): Fan Yang, Bing Liu, Zhao Yu, Kris A.G. Wyckhuys, Wopke Van der Werf, Yanhui Lu
Software Mentions: 8
Published: about 5 years ago

10.18632/oncotarget.6793

Annexin A1 sustains tumor metabolism and cellular proliferation upon stable loss of HIF1A
Cited by: 12
Author(s): Nadine Rohwer, Fabian Bindel, Christina Grimm, Suling J. Lin, Jessica Wappler, Bertram Klinger, Nils Blüthgen, Ilona Du Bois, Bernd Schmeck, Hans Lehrach, Marjo de Graauw, Emanuel Gonçalvès, Julio Sáez-Rodríguez, Patrick Tan, Heike Grabsch, Alessandro Prigione, Stefan Kempa, Thorsten Cramer
Software Mentions: 8
Published: almost 11 years ago

10.1016/j.immuni.2019.02.006

Anti-commensal IgG Drives Intestinal Inflammation and Type 17 Immunity in Ulcerative Colitis
Cited by: 121
Author(s): Tomas Castro‐Dopico, Thomas W. Dennison, John R. Ferdinand, Rebeccah J. Mathews, Aaron Fleming, Dean Clift, Benjamin J Stewart, Chenzhi Jing, Konstantina Strongili, Larisa I. Labzin, Edward J M Monk, Kourosh Saeb‐Parsy, Clare E. Bryant, Simon Clare, Miles Parkes, Menna R. Clatworthy
Software Mentions: 8
Published: over 7 years ago

10.1155/2021/9048375

Nomograms for Predicting Prognosis of Primary Mediastinal Seminoma: A Population-Based Study
Cited by: 2
Author(s): Weining Huang, Jingwen Luo, Xianghong Zhou, Ying Zhao, Tao Zhang, Xuelei Ma
Software Mentions: 8
Published: over 5 years ago

10.18632/oncotarget.16961

RNA sequencing-based cell proliferation analysis across 19 cancers identifies a subset of proliferation-informative cancers with a common survival signature
Cited by: 24
Author(s): Ryne C. Ramaker, Brittany N. Lasseigne, Andrew A. Hardigan, Laura Palacio, David S. Gunther, R Myers, Sara J. Cooper
Software Mentions: 8
Published: over 9 years ago

10.1371/journal.ppat.1006525

Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens
Cited by: 53
Author(s): Olaya Rendueles, Marc García-Garcerá, Bertrand Néron, Marie Touchon, Eduardo P. C. Rocha
Software Mentions: 8
Published: about 9 years ago

10.1186/s40168-019-0716-4

The association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in Fiji
Cited by: 11
Author(s): Laura K. Boelsen, Eileen M. Dunne, Moana Mika, Stefanie Eggers, Cattram Nguyen, Felisita Tupou Ratu, Fiona M. Russell, E. Kim Mulholland, Markus Hilty, Catherine Satzke
Software Mentions: 8
Published: about 7 years ago

10.1093/gigascience/giz003

Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise
Cited by: 21
Author(s): Stefan Prost, Ellie E. Armstrong, Johan A. A. Nylander, Gregg W.C. Thomas, Alexander Suh, Bent Petersen, Love Dalén, Brett W. Benz, Mozes P. K. Blom, Eleftheria Palkopoulou, Per G. P. Ericson, Martin Irestedt
Software Mentions: 8
Published: over 7 years ago

10.1093/plankt/fbab017

Container volume may affect growth rates of ciliates and clearance rates of their microcrustacean predators in microcosm experiments
Cited by: 4
Author(s): Thomas Weisse, Dunja Lukić, Xiaoteng Lu
Software Mentions: 8
Published: over 5 years ago

10.1093/gbe/evaa191

Coexpression Clusters and Allele-Specific Expression in Metabolism-Based Herbicide Resistance
Cited by: 17
Author(s): Darci A. Giacomini, Eric Patterson, Anita Küpper, Roland Beffa, Todd A. Gaines, Patrick J. Tranel
Software Mentions: 8
Published: about 6 years ago

10.1093/bioinformatics/bts438

iBBiG: iterative binary bi-clustering of gene sets
Cited by: 44
Author(s): Daniel Gusenleitner, Eleanor Howe, Stefan Bentink, John Quackenbush, Aedín C. Culhane
Software Mentions: 8
Published: about 14 years ago

10.1186/s40478-021-01240-4

Experimental colitis promotes sustained, sex-dependent, T-cell-associated neuroinflammation and parkinsonian neuropathology
Cited by: 26
Author(s): Madelyn C. Houser, W. Michael Caudle, Jianjun Chang, George T. Kannarkat, Yuan Yang, Sean D. Kelly, Danielle Oliver, Valerie Joers, Kathleen M. Shannon, Ali Keshavarzian, Malú G. Tansey
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pgen.1008754

Single-nucleus RNA-seq identifies divergent populations of FSHD2 myotube nuclei
Cited by: 24
Author(s): Shan Jiang, Katherine Williams, Xiangduo Kong, Weihua Zeng, Nam Viet Nguyen, Xinyi Ma, Rabi Tawil, Kyoko Yokomori, A Mortazavi
Software Mentions: 8
Published: over 6 years ago

10.1038/s42003-021-01658-5

Colonization and genetic diversification processes of Leishmania infantum in the Americas
Cited by: 30
Author(s): Philipp Schwabl, Mariana Côrtes Boité, Giovanni Bussotti, Arne Jacobs, Björn Andersson, Otacílio C. Moreira, Anita Leocádio Freitas-Mesquita, José Roberto Meyer‐Fernandes, Erich Loza Telleria, Yara M. Traub-Csekö, Slavica Vaselek, Tereza Leštinová, Petr Volf, Fernanda Nazaré Morgado, Renato Porrozzi, Martin S. Llewellyn, Gérald F. Späth, Elisa Cupolillo
Software Mentions: 8
Published: over 5 years ago

10.1186/s42523-021-00111-6

Characterization of the gut microbiome in wild rocky mountainsnails (Oreohelix strigosa)
Cited by: 2
Author(s): Bridget Chalifour, Jingchun Li
Software Mentions: 8
Published: about 5 years ago

10.3389/fpls.2021.616975

Heterotic Patterns of Temperate and Tropical Maize by Ear Photometry
Cited by: 1
Author(s): Seth Tolley, Amritpal Singh, Mitchell R. Tuinstra
Software Mentions: 8
Published: over 5 years ago

10.1038/s41396-019-0383-2

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots
Cited by: 596
Author(s): Samiran Banerjee, Florian Walder, Lucie Büchi, Marion Meyer, Alain Held, Andreas Gattinger, Thomas Keller, Raphaël Charles, Marcel G. A. van der Heijden
Software Mentions: 8
Published: over 7 years ago

10.3390/ijms21103591

Examining Short-Term Responses to a Long-Term Problem: RNA-Seq Analyses of Iron Deficiency Chlorosis Tolerant Soybean
Cited by: 8
Author(s): Adrienne N. Moran Lauter, Lindsay Rutter, Dianne Cook, Jamie A. O’Rourke, Michelle A. Graham
Software Mentions: 8
Published: over 6 years ago

10.1186/s13148-021-01144-z

Whole-genome methylation analysis of testicular germ cells from cryptozoospermic men points to recurrent and functionally relevant DNA methylation changes
Cited by: 9
Author(s): Sara Di Persio, Elsa Leitão, Marius Wöste, Tobias Tekath, Jann‐Frederik Cremers, Martin Dugas, Xiaolin Liao, Gerd Meyer zu Hörste, Sabine Kliesch, Sandra Laurentino, Nina Neuhaus, Bernhard Horsthemke
Software Mentions: 8
Published: about 5 years ago

10.1186/s12877-020-01644-2

Dysbiosis, gut barrier dysfunction and inflammation in dementia: a pilot study
Cited by: 87
Author(s): Vanessa Stadlbauer, Lara Engertsberger, Irina Komarova, Nicole Feldbacher, Bettina Leber, Gerhard Pichler, Nicole Fink, Monika Scarpatetti, Walter Schippinger, Reinhold Schmidt, Angela Horvath
Software Mentions: 8
Published: about 6 years ago

10.1186/s12864-020-6653-6

Novel approach in whole genome mining and transcriptome analysis reveal conserved RiPPs in Trichoderma spp
Cited by: 14
Author(s): Gabriel A. Vignolle, Robert L. Mach, Astrid R. Mach-Aigner, Christian Derntl
Software Mentions: 8
Published: over 6 years ago

10.1002/acn3.51441

Gut microbiome is associated with multiple sclerosis activity in children
Cited by: 18
Author(s): Mary Horton, Kathryn McCauley, Douglas Fadrosh, Kei E. Fujimura, Jennifer Graves, Jayne Ness, Yolanda Wheeler, Mark Gorman, Leslie Benson, Bianca Weinstock‐Guttman, Amy Waldman, Moses Rodriguez, Jan‐Mendelt Tillema, Lauren Krupp, Anita Belman, Soe Mar, Mary Rensel, Tanuja Chitnis, T. Charles Casper, John Rose, Janace Hart, Xiaorong Shao, Helen Tremlett, Susan V. Lynch, Lisa F. Barcellos, Emmanuelle Waubant
Software Mentions: 8
Published: about 5 years ago

10.1186/1471-2105-14-133

How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis
Cited by: 23
Author(s): Robert Lehmann, Rainer Machné, Jens Georg, Manuela Benary, Ilka M. Axmann, Ralf Steuer
Software Mentions: 8
Published: over 13 years ago

10.3390/cancers12010045

N-Terminal Truncated Myb with New Transcriptional Activity Produced Through Use of an Alternative MYB Promoter in Salivary Gland Adenoid Cystic Carcinoma
Cited by: 11
Author(s): Candace A. Frerich, Hailey N. Sedam, Huining Kang, Yoshitsugu Mitani, Adel K. El‐Naggar, Scott A. Ness
Software Mentions: 8
Published: almost 7 years ago

10.3390/cancers13143621

HPV Infection Leaves a DNA Methylation Signature in Oropharyngeal Cancer Affecting Both Coding Genes and Transposable Elements
Cited by: 10
Author(s): Diego Camuzi, Luisa Aguirre Buexm, Simone De Queiroz Chaves Lourenço, Davide Degli Esposti, Cyrille Cuenin, Monique de Souza Almeida Lopes, Francesca Manara, Fazlur Rahman Talukdar, Zdenko Herceg, Luís Felipe Ribeiro Pinto, Sheila Coelho Soares-Lima
Software Mentions: 8
Published: about 5 years ago

10.3390/cancers12113089

CT-Based Radiomics Analysis to Predict Malignancy in Patients with Intraductal Papillary Mucinous Neoplasm (IPMN) of the Pancreas
Cited by: 28
Author(s): David Tobaly, João Santinha, Riccardo Sartoris, Marco Dioguardi Burgio, Celso Matos, Jérôme Cros, Anne Couvelard, Vinciane Rebours, Alain Sauvanet, Maxime Ronot, Nikolaos Papanikolaou, Valérie Vilgrain
Software Mentions: 8
Published: almost 6 years ago

10.1186/s12917-015-0593-4

A preliminary study of the effect of closed incision management with negative pressure wound therapy over high-risk incisions
Cited by: 14
Author(s): Karen L Perry, Lynda Rutherford, D. Sajik, Mieghan Bruce
Software Mentions: 8
Published: almost 11 years ago

10.3389/fonc.2019.01243

Identification of Subtype-Specific Three-Gene Signature for Prognostic Prediction in Diffuse Type Gastric Cancer
Cited by: 12
Author(s): Bowen Bao, Chunlei Zheng, Bowen Yang, Yue Jin, Kezuo Hou, Zhi Li, Xueying Zheng, Shitong Yu, Xiaojie Zhang, Yibo Fan, Xiujuan Qu, Yunpeng Liu, Xiaofang Che
Software Mentions: 8
Published: almost 7 years ago

10.3389/fmicb.2017.02512

Worldwide Phylogenetic Group Patterns of Escherichia coli from Commensal Human and Wastewater Treatment Plant Isolates
Cited by: 69
Author(s): Nancy de Castro Stoppe, Juliana Saragiotto Silva, Camila Carlos, Maria Inês Z. Sato, Antônio Mauro Saraiva, Laura Maria Mariscal Ottoboni, Tatiana Teixeira Torres
Software Mentions: 8
Published: almost 9 years ago

10.1002/ece3.4535

Determining social and population structures requires multiple approaches: A case study of the desert ant<i>Cataglyphis israelensis</i>
Cited by: 3
Author(s): Tali Reiner Brodetzki, Abraham Hefetz
Software Mentions: 8
Published: almost 8 years ago

10.3758/s13420-016-0255-9

Effects of forced movements on learning: Findings from a choice reaction time task in rats
Cited by: 3
Author(s): Hidekazu Kaneko, Hiroto Sano, Yasuhisa Hasegawa, Hiroshi Tamura, Shinya Suzuki
Software Mentions: 8
Published: over 9 years ago

10.3389/fmicb.2020.01987

Development and Analysis of a Stable, Reduced Complexity Model Soil Microbiome
Cited by: 15
Author(s): Ryan McClure, Dan Naylor, Yuliya Farris, Michelle Davison, Sarah Fansler, Kirsten Hofmockel, Janet K. Jansson
Software Mentions: 8
Published: about 6 years ago

10.3390/cells8080920

The Snapdragon LATE ELONGATED HYPOCOTYL Plays A Dual Role in Activating Floral Growth and Scent Emission
Cited by: 9
Author(s): Marta I. Terry, Fernando Pérez-Sánz, Pedro J. Navarro, Julia Weiß, Marcos Egea‐Cortines
Software Mentions: 8
Published: about 7 years ago

10.1128/mSphere.00488-17

Novel ITS1 Fungal Primers for Characterization of the Mycobiome
Cited by: 68
Author(s): Mykhaylo Usyk, Christine P. Zolnik, Hitesh D. Patel, Michael H. Levi, Robert D. Burk
Software Mentions: 8
Published: almost 9 years ago

10.3390/foods8100488

Effect of Product Involvement on Panels’ Vocabulary Generation, Attribute Identification, and Sample Configurations in Beer
Cited by: 4
Author(s): Line Elgaard, Line Holler Mielby, Hildegarde Heymann, Derek V. Byrne
Software Mentions: 8
Published: almost 7 years ago

10.1371/journal.pbio.2002054

Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells
Cited by: 76
Author(s): Colin R. Lickwar, J. Gray Camp, Matthew Weiser, Jordan L. Cocchiaro, David M. Kingsley, Terrence S. Furey, Shehzad Z. Sheikh, John F. Rawls
Software Mentions: 8
Published: about 9 years ago

10.3389/fpsyg.2017.02229

Work Engagement among Rescue Workers: Psychometric Properties of the Portuguese UWES
Cited by: 18
Author(s): Jorge Sinval, Alexandra Marqués Pinto, Cristina Queirós, João Marôco
Software Mentions: 8
Published: over 8 years ago

10.7554/eLife.19545

Splicing repression allows the gradual emergence of new Alu-exons in primate evolution
Cited by: 52
Author(s): Jan Attig, Igor Ruiz de los Mozos, Nejc Haberman, Zhen Wang, Warren Emmett, Kathi Zarnack, Julian König, Jernej Ule
Software Mentions: 8
Published: almost 10 years ago

10.1038/s41598-019-50642-x

Transcriptome Sequencing of Peripheral Blood Mononuclear Cells from Elite Controller-Long Term Non Progressors
Cited by: 11
Author(s): Francisco Díez-Fuertes, Humberto Erick De La Torre Tarazona, Esther Calonge, María Pernas, María del Mar Alonso-Socas, Laura Capa, Javier García-Pérez, Anavaj Sakuntabhai, José Alcamı́
Software Mentions: 8
Published: about 7 years ago

10.1371/journal.pone.0230262

So far, so good… Similar fitness consequences and overall energetic costs for short and long-distance migrants in a seabird
Cited by: 10
Author(s): David Pelletier, Yannick Seyer, Stefan Garthe, Salomé Bonnefoi, Richard A. Phillips, Magella Guillemette
Software Mentions: 8
Published: over 6 years ago

10.3390/e23010072

Unraveling of a Strongly Correlated Dynamical Network of Residues Controlling the Permeation of Potassium in KcsA Ion Channel
Cited by: 2
Author(s): Salvatore M. Cosseddu, Eunju Julia Choe, I. A. Khovanov
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-019-44597-2

NOMePlot: analysis of DNA methylation and nucleosome occupancy at the single molecule
Cited by: 3
Author(s): Francisco Requena, Helena G Asenjo, Guillermo Barturen, Jordi Martorell-Marugán, Pedro Carmona-Sáez, David Landeira
Software Mentions: 8
Published: over 7 years ago

10.3389/fvets.2020.00523

Mind the Queue: A Case Study in Visualizing Heterogeneous Behavioral Patterns in Livestock Sensor Data Using Unsupervised Machine Learning Techniques
Cited by: 11
Author(s): Catherine McVey, Fushing Hsieh, Diego Manríquez, Pablo Pinedo, Kristina Horback
Software Mentions: 8
Published: about 6 years ago

Projects: pypi: stats

Science Score: 90/100

Bonuses:

Penalties:

Papers Mentioning stats 3,105