Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/microorganisms8010038

https://doi.org/10.3390/microorganisms8010038

Tomato RNA-seq Data Mining Reveals the Taxonomic and Functional Diversity of Root-Associated Microbiota

Cited by: 13
Author(s): Matteo Chialva, Stefano Ghignone, Mara Novero, Wael N. Hozzein, Luisa Lanfranco, Paola Bonfante
Published: almost 5 years ago

Software Mentions 9

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: adespatial
Multivariate Multiscale Spatial Analysis
Papers that mentioned: 36
cran: car
Companion to Applied Regression
Papers that mentioned: 1,651
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: car
Papers that mentioned: 1,651
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105