pypi: scipy | Projects | Ecosyste.ms: Papers

10.3389/fimmu.2021.707830

In-Depth Profiling of T-Cell Responsiveness to Commonly Recognized CMV Antigens in Older People Reveals Important Sex Differences
Cited by: 6
Author(s): Bernhard Reus, Stefano Caserta, Martin Larsen, George W. Morrow, Aalia Bano, Michael Hallensleben, Chakravarthi Rajkumar, Alejandra Pera, Florian Kern
Software Mentions: 6
Published: almost 3 years ago

10.1016/j.celrep.2019.03.102

The Spectrum of Asynchronous Dynamics in Spiking Networks as a Model for the Diversity of Non-rhythmic Waking States in the Neocortex
Cited by: 14
Author(s): Yann Zerlaut, Stefano Zucca, Stefano Panzeri, Tommaso Fellin
Software Mentions: 6
Published: about 5 years ago

10.1016/j.ssmph.2020.100687

Application of machine learning to understand child marriage in India
Cited by: 9
Author(s): Anita Raj, Nabamallika Dehingia, Abhishek Singh, Lotus McDougal, Julian McAuley
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-017-15695-w

Objective quantification of nanoscale protein distributions
Cited by: 15
Author(s): Miklos Szoboszlay, Tekla Kirizs, Zoltán Nusser
Software Mentions: 6
Published: over 6 years ago

10.3389/fnhum.2019.00348

EEG-Based Classification of Internally- and Externally-Directed Attention in an Augmented Reality Paradigm
Cited by: 34
Author(s): Lisa-Marie Vortmann, Felix Kroll, Felix Putze
Software Mentions: 6
Published: over 4 years ago

10.7554/eLife.55325

Parallel CRISPR-Cas9 screens clarify impacts of p53 on screen performance
Cited by: 32
Author(s): A. Bowden, David A Morales-Juarez, Matylda Sczaniecka-Clift, Maria Martin Agudo, Natalia Lukashchuk, John Christopher Thomas, Stephen Jackson
Software Mentions: 6
Published: almost 4 years ago

10.7554/eLife.61909

Real-time, low-latency closed-loop feedback using markerless posture tracking
Cited by: 78
Author(s): Gary A Kane, Gonçalo Lopes, Jonny L. Saunders, Alexander Mathis
Software Mentions: 6
Published: over 3 years ago

10.1186/s12864-017-3860-x

Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction
Cited by: 29
Author(s): Hideaki Hiraki, Hiroshi Kagoshima, Christopher Kraus, Philipp H. Schiffer, Yumiko Ueta, Michael Kroiher, Einhard Schierenberg, Yuji Kohara
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pcbi.1007973

XDream: Finding preferred stimuli for visual neurons using generative networks and gradient-free optimization
Cited by: 9
Author(s): Will Xiao, Gabriel Kreiman
Software Mentions: 6
Published: almost 4 years ago

10.1136/gutjnl-2020-323877

Blue poo: impact of gut transit time on the gut microbiome using a novel marker
Cited by: 61
Author(s): Francesco Asnicar, Emily R Leeming, Eirini Dimidi, Mohsen Mazidi, Paul W. Franks, Haya Al Khatib, Ana M. Valdes, Richard Davies, Elco Bakker, Lucy Francis, Andrew T. Chan, Rachel Gibson, George Hadjigeorgiou, Jonathan Wolf, Timothy D. Spector, Nicola Segata, Sarah Berry
Software Mentions: 6
Published: about 3 years ago

10.3389/fimmu.2018.02342

Supplemented Alkaline Phosphatase Supports the Immune Response in Patients Undergoing Cardiac Surgery: Clinical and Computational Evidence
Cited by: 18
Author(s): Alva Presbitero, Emiliano Mancini, Ruud Brands, Valeria V. Krzhizhanovskaya, Peter M. A. Sloot
Software Mentions: 6
Published: over 5 years ago

10.7554/eLife.48063

Initiation of chromosome replication controls both division and replication cycles in E. coli through a double-adder mechanism
Cited by: 44
Author(s): Guillaume Witz, Erik van Nimwegen, Thomas Julou
Software Mentions: 6
Published: over 4 years ago

10.1007/s00429-020-02046-1

CBPtools: a Python package for regional connectivity-based parcellation
Cited by: 9
Author(s): Niels Reuter, Sarah Genon, Shahrzad Kharabian Masouleh, Felix Hoffstaedter, Xiaojin Liu, Tobias Kalenscher, Simon B. Eickhoff, Kaustubh R. Patil
Software Mentions: 6
Published: about 4 years ago

10.3389/fncom.2014.00139

Diffusion approximation-based simulation of stochastic ion channels: which method to use?
Cited by: 8
Author(s): Danilo Pezo, Daniel Soudry, Patricio Orio
Software Mentions: 6
Published: over 9 years ago

10.7554/eLife.51085

CytoCensus, mapping cell identity and division in tissues and organs using machine learning
Cited by: 12
Author(s): Martin Hailstone, Dominic Waithe, Tamsin J Samuels, Yang Lu, Ita Costello, Yoav Arava, Elizabeth J. Robertson, Richard M. Parton, Ilan Davis
Software Mentions: 6
Published: about 4 years ago

10.3389/fncom.2018.00083

Task-Related Synaptic Changes Localized to Small Neuronal Population in Recurrent Neural Network Cortical Models
Cited by: 6
Author(s): Satoshi Kuroki, Takuya Isomura
Software Mentions: 6
Published: over 5 years ago

10.7554/eLife.55160

Pyphe, a python toolbox for assessing microbial growth and cell viability in high-throughput colony screens
Cited by: 28
Author(s): Stephan Kamrad, María Rodríguez-López, Cristina Cotobal, Clara Correia‐Melo, Markus Ralser, Jürg Bähler
Software Mentions: 6
Published: almost 4 years ago

10.1186/s13059-020-02099-9

Contiguous and stochastic CHH methylation patterns of plant DRM2 and CMT2 revealed by single-read methylome analysis
Cited by: 11
Author(s): Keith D. Harris, Assaf Zemach
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pcbi.1007553

Scalable phylogenetic profiling using MinHash uncovers likely eukaryotic sexual reproduction genes
Cited by: 18
Author(s): David Moi, Laurent Kilchoer, Pablo S. Aguilar, Christophe Dessimoz
Software Mentions: 6
Published: almost 4 years ago

10.3389/fpsyt.2021.643609

Comorbid Chronic Pain and Depression: Shared Risk Factors and Differential Antidepressant Effectiveness
Cited by: 40
Author(s): William H. Roughan, Adrián I. Campos, Luis M. García-Marín, Gabriel Cuéllar-Partida, Michelle K. Lupton, Ian B. Hickie, Sarah E. Medland, Naomi R. Wray, Enda M. Byrne, Trung Thanh Ngo, Nicholas G. Martin, Miguel E. Rentería
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pgen.1007276

Argonaute2 and LaminB modulate gene expression by controlling chromatin topology
Cited by: 19
Author(s): Ezequiel Názer, Ryan Dale, Madoka Chinen, Behram Radmanesh, Elissa P. Lei
Software Mentions: 6
Published: about 6 years ago

10.3389/fgene.2020.00238

Detection and Comparative Analysis of Methylomic Biomarkers of Rheumatoid Arthritis
Cited by: 4
Author(s): Xin Feng, Xubing Hao, Ruoyao Shi, Zhiqiang Xia, Lan Huang, Qiong Yu, Fengfeng Zhou
Software Mentions: 6
Published: about 4 years ago

10.7554/eLife.53933

Heterogeneous T cell motility behaviors emerge from a coupling between speed and turning in vivo
Cited by: 33
Author(s): Elizabeth R. Jerison, Stephen R. Quake
Software Mentions: 6
Published: about 4 years ago

10.1107/S2052252517006212

Healing X-ray scattering images
Cited by: 10
Author(s): Jiliang Liu, Julien Lhermitte, Ye Tian, Zheng Zhang, D. Yu, Kevin G. Yager
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0222523

The feasibility of using citizens to segment anatomy from medical images: Accuracy and motivation
Cited by: 2
Author(s): Judith R. Meakin, Ryan M. Ames, Jonathan C. G. Jeynes, Joanne R. Welsman, Michael Gundry, Karen Knapp, Richard Everson
Software Mentions: 5
Published: over 4 years ago

10.1186/s12896-019-0535-5

VARSCOT: variant-aware detection and scoring enables sensitive and personalized off-target detection for CRISPR-Cas9
Cited by: 6
Author(s): Laurence O.W. Wilson, Sara Hetzel, Christopher Pockrandt, Knut Reinert, Denis C. Bauer
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pcbi.1008768

Nonlinear effects of intrinsic dynamics on temporal encoding in a model of avian auditory cortex
Cited by: 1
Author(s): Christof Fehrman, Tyler D. Robbins, C. Daniel Meliza
Software Mentions: 5
Published: about 3 years ago

10.1186/s13059-014-0511-2

A genomic and evolutionary approach reveals non-genetic drug resistance in malaria
Cited by: 34
Author(s): Jonathan D. Herman, Daniel P. Rice, Ulf Ribacke, Jacob Silterra, Amy Deik, Eli L. Moss, Kate M Broadbent, Daniel E. Neafsey, Michael M. Desai, Clary B. Clish, Ralph Mazitschek, Dyann F. Wirth
Software Mentions: 5
Published: over 9 years ago

10.1128/mSystems.00913-20

Genome-Scale Metabolic Models and Machine Learning Reveal Genetic Determinants of Antibiotic Resistance in Escherichia coli and Unravel the Underlying Metabolic Adaptation Mechanisms
Cited by: 23
Author(s): Nicole Pearcy, Yue Hu, Michelle Baker, Alexandre Maciel-Guerra, Ning Xue, Wei Wang, Jasmeet Kaler, Zong–Gen Peng, Fengqin Li, Tania Dottorini
Software Mentions: 5
Published: over 2 years ago

10.1140/epjds/s13688-021-00270-1

Behaviours and attitudes in response to the COVID-19 pandemic: insights from a cross-national Facebook survey
Cited by: 48
Author(s): Daniela Perrotta, André Grow, Francesco Rampazzo, Jorge Cimentada, Emanuele Del Fava, Sofia Gil‐Clavel, Emilio Zagheni
Software Mentions: 5
Published: about 3 years ago

10.1128/mBio.03109-19

A Multiplex Fluidic Chip for Rapid Phenotypic Antibiotic Susceptibility Testing
Cited by: 16
Author(s): Pikkei Wistrand-Yuen, Christer Malmberg, Nikos Fatsis-Kavalopoulos, Moritz Lübke, Thomas Tängdén, Johan Kreuger
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0222165

Advancing computational biology and bioinformatics research through open innovation competitions
Cited by: 5
Author(s): Andrea Blasco, Michael G. Endres, Rinat A. Sergeev, Anup Jonchhe, N. J. Maximilian Macaluso, Rajiv Narayan, Ted Natoli, Jin Hyun Paik, Bryan Briney, Chunlei Wu, Andrew I. Su, Aravind Subramanian, Karim R. Lakhani
Software Mentions: 5
Published: over 4 years ago

10.15252/embj.2020107245

Desensitisation of Notch signalling through dynamic adaptation in the nucleus
Cited by: 13
Author(s): Ranjith Viswanathan, Jonas Hartmann, Cristina Pallares Cartes, Stefano De Renzis
Software Mentions: 5
Published: almost 3 years ago

10.1186/s12859-018-2092-7

An interpretable framework for clustering single-cell RNA-Seq datasets
Cited by: 46
Author(s): Jesse M. Zhang, Jue Fan, H. Christina Fan, David Rosenfeld, David Tse
Software Mentions: 5
Published: about 6 years ago

10.1038/s41398-020-00994-0

Presynaptic dysfunction in CASK-related neurodevelopmental disorders
Cited by: 25
Author(s): Martin Becker, Francesca Mastropasqua, Jan Philipp Reising, Simon Maier, Mai‐Lan Ho, Ielyzaveta Rabkina, Danyang Li, Janina Neufeld, Lea Ballenberger, Lynnea Myers, Viveka Moritz, Malin Kele, Josephine Wincent, Charlotte Willfors, Rouslan Sitnikov, Eric Herlenius, Britt‐Marie Anderlid, Anna Falk, Sven Bölte, Kristiina Tammimies
Software Mentions: 5
Published: over 3 years ago

10.34133/2019/7937156

instaGraminoid, a Novel Colorimetric Method to Assess Herbicide Resistance, Identifies Patterns of Cross-Resistance in Annual Ryegrass
Cited by: 1
Author(s): Jefferson Paril, Alexandre Fournier‐Level
Software Mentions: 5
Published: over 5 years ago

10.3389/fnsyn.2019.00017

Mechanisms of PTPσ-Mediated Presynaptic Differentiation
Cited by: 28
Author(s): Claire Bomkamp, Nirmala Padmanabhan, Benyamin Karimi, Yuan Ge, Jesse T. Chao, Christopher Loewen, Tabrez J. Siddiqui, Ann Marie Craig
Software Mentions: 5
Published: almost 5 years ago

10.1098/rstb.2020.0241

Phylogenetic signal in the vocalizations of vocal learning and vocal non-learning birds
Cited by: 10
Author(s): József Arató, W. Tecumseh Fitch
Software Mentions: 5
Published: over 2 years ago

10.1371/journal.pone.0201263

The mRNA cap methyltransferase gene TbCMT1 is not essential in vitro but is a virulence factor in vivo for bloodstream form Trypanosoma brucei
Cited by: 2
Author(s): Anna Kelner, Michele Tinti, Maria Lucia S. Güther, Bernardo J. Foth, Lia Chappell, Matthew Berriman, Victoria H. Cowling, Michael A. J. Ferguson
Software Mentions: 5
Published: almost 6 years ago

10.1186/s40064-016-2573-y

Computing symmetrical strength of N-grams: a two pass filtering approach in automatic classification of text documents
Cited by: 10
Author(s): Deepak Agnihotri, Kesari Verma, Priyanka Tripathi
Software Mentions: 5
Published: almost 8 years ago

10.18383/j.tom.2016.00172

Dynamic Susceptibility Contrast-MRI Quantification Software Tool: Development and Evaluation
Cited by: 7
Author(s): Panagiotis Korfiatis, Timothy L. Kline, Zachary S. Kelm, Rickey E. Carter, Leland Hu, Bradley J. Erickson
Software Mentions: 5
Published: over 7 years ago

10.1128/mSystems.00230-18

Emergent Subpopulation Behavior Uncovered with a Community Dynamic Metabolic Model of <i>Escherichia coli</i> Diauxic Growth
Cited by: 74
Author(s): A. Succurro, Daniel Segrè, Oliver Ebenhöh
Software Mentions: 5
Published: about 5 years ago

10.3389/fpls.2019.00875

Evaluation of the Phenotypic Repeatability of Canopy Temperature in Wheat Using Continuous-Terrestrial and Airborne Measurements
Cited by: 32
Author(s): David M. Deery, G. J. Rebetzke, J.A.J. Berni, William D. Bovill, Richard A. James, Anthony G. Condon, Robert T. Furbank, Scott C. Chapman, Ronald P. Fischer
Software Mentions: 5
Published: almost 5 years ago

10.3390/s21093145

An Evaluation of Motion Trackers with Virtual Reality Sensor Technology in Comparison to a Marker-Based Motion Capture System Based on Joint Angles for Ergonomic Risk Assessment
Cited by: 4
Author(s): Jan P. Vox, Anika Weber, Karen Insa Wolf, Krzysztof Izdebski, Thomas Schüler, Peter König, Frank Wallhoff, Daniel Friemert
Software Mentions: 5
Published: about 3 years ago

10.3390/diagnostics11081361

GIST and Ghrelin: To Be or Not to Be?
Cited by: 2
Author(s): Iuliana Spiridon, Delia Ciobanu, Simona Eliza Giușcă, Dan Ferariu, I Pleşcă, Irina Draga Căruntu
Software Mentions: 5
Published: almost 3 years ago

10.7717/peerj-cs.216

DeepMoney: counterfeit money detection using generative adversarial networks
Cited by: 10
Author(s): Toqeer Ali Syed, Salman Jan, Ahmad Alkhodre, Mohammad Nauman, Muhammad Amin, Muhammad Shoaib Siddiqui
Software Mentions: 5
Published: over 4 years ago

10.3389/fpsyt.2016.00130

Development and Clinical Evaluation of an mHealth Application for Stress Management
Cited by: 26
Author(s): Brent Winslow, George L. Chadderdon, Sara Dechmerowski, David Jones, Solomon Kalkstein, Jennifer L. Greene, Philip Gehrman
Software Mentions: 5
Published: almost 8 years ago

10.7717/peerj.4312

A new Python library to analyse skeleton images confirms malaria parasite remodelling of the red blood cell membrane skeleton
Cited by: 34
Author(s): Juan Nunez-Iglesias, Adam J. Blanch, Oliver Looker, Matthew W. A. Dixon, Leann Tilley
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.3657

<tt>phydms</tt>: software for phylogenetic analyses informed by deep mutational scanning
Cited by: 21
Author(s): Sarah K Hilton, Michael B. Doud, Jesse D Bloom
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0251458

Statistical privacy-preserving message broadcast for peer-to-peer networks
Cited by: 1
Author(s): David Mödinger, Jan-Hendrik Lorenz, Franz J. Hauck
Software Mentions: 5
Published: about 3 years ago

10.3389/fonc.2021.604584

Analysis of Gut Microbiome Using Explainable Machine Learning Predicts Risk of Diarrhea Associated With Tyrosine Kinase Inhibitor Neratinib: A Pilot Study
Cited by: 13
Author(s): Chi Wah Wong, Susan E. Yost, Jin Sung Lee, John D. Gillece, Megan Folkerts, Lauren Reining, Sarah K. Highlander, Zahra Eftekhari, Joanne Mortimer, Yuan Yuan
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0183057

Data-driven coarse graining of large biomolecular structures
Cited by: 11
Author(s): Yi‐Ling Chen, Michael Habeck
Software Mentions: 5
Published: almost 7 years ago

10.7717/peerj.5882

imGLAD: accurate detection and quantification of target organisms in metagenomes
Cited by: 20
Author(s): Juan Castro, Luis M. Rodriguez-R, William T. Harvey, Michael R. Weigand, Janet K. Hatt, Michelle Qiu Carter, Konstantinos T. Konstantinidis
Software Mentions: 5
Published: over 5 years ago

10.1155/2014/748750

The Preventable Risk Integrated ModEl and Its Use to Estimate the Health Impact of Public Health Policy Scenarios
Cited by: 45
Author(s): Peter Scarborough, Richard Harrington, Anja Mizdrak, Lijuan Zhou, Aiden Doherty
Software Mentions: 5
Published: over 10 years ago

10.1093/ve/vex042

TreeTime: Maximum-likelihood phylodynamic analysis
Cited by: 786
Author(s): Pavel Sagulenko, Vadim Puller, Richard A. Neher
Software Mentions: 5
Published: over 6 years ago

10.3389/fnins.2020.00822

A Panel of Synapse-Related Genes as a Biomarker for Gliomas
Cited by: 3
Author(s): Xiangwen Ji, Hongwei Zhang, Qinghua Cui
Software Mentions: 5
Published: almost 4 years ago

10.3390/s19030521

A Comparison of Machine Learning and Deep Learning Techniques for Activity Recognition using Mobile Devices
Cited by: 37
Author(s): Alejandro Baldominos, Alejandro Cervantes, Yago Sáez, Pedro Isasi
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-94422-y

Semantic segmentation of PolSAR image data using advanced deep learning model
Cited by: 30
Author(s): Rajat Garg, Anil Kumar, Nikunj Bansal, Manish Prateek, Shashi Kumar
Software Mentions: 5
Published: almost 3 years ago

10.3390/s19061361

Smartbins: Using Intelligent Harvest Baskets to Estimate the Stages of Berry Harvesting
Cited by: 5
Author(s): Patricio Galeas, Carlos Muñoz, Juan Ignacio Huircán, Mario Fernández, Luis A. Segura‐Ponce, Cristian Durán-Faúndez
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-86135-z

Analysis of the response of the cell membrane of Saccharomyces cerevisiae during the detoxification of common lignocellulosic inhibitors
Cited by: 10
Author(s): Pau Cabañeros López, Chuantao Peng, Nils Arneborg, Helena Junicke, Krist V. Gernaey
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0081462

Estimation of the Horizon in Photographed Outdoor Scenes by Human and Machine
Cited by: 5
Author(s): Christian Herdtweck, Christian Wallraven
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0246396

High SARS-CoV-2 load in the nasopharynx of patients with a mild form of COVID-19 is associated with clinical deterioration regardless of the hydroxychloroquine administration
Cited by: 4
Author(s): Alexey A. Komissarov, Ivan Molodtsov, O. Ivanova, Elena Maryukhnich, Svetlana S. Kudryavtseva, А. И. Мазус, E. L. Nikonov, Elena Vasilieva
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-93149-0

OpenHSV: an open platform for laryngeal high-speed videoendoscopy
Cited by: 20
Author(s): Andreas M. Kist, Stephan Dürr, Anne Schützenberger, Michael Döllinger
Software Mentions: 5
Published: almost 3 years ago

10.7554/eLife.54026

A decentralised neural model explaining optimal integration of navigational strategies in insects
Cited by: 52
Author(s): Xuelong Sun, Shigang Yue, Michael Mangan
Software Mentions: 5
Published: almost 4 years ago

10.3389/fninf.2021.614881

MIIND : A Model-Agnostic Simulator of Neural Populations
Cited by: 4
Author(s): Hugh Osborne, Yi Ming Lai, Mikkel Elle Lepperød, David Sichau, Lukas Deutz, Marc de Kamps
Software Mentions: 5
Published: almost 3 years ago

10.1371/journal.pone.0215054

Numerical simulations for the Toda lattices Hamiltonian system: Higher order symplectic illustrative perspective
Cited by: 1
Author(s): Asif Mushtaq, Amna Noreen, Muhammad Farooq
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-77367-6

An efficient machine learning-based approach for screening individuals at risk of hereditary haemochromatosis
Cited by: 4
Author(s): Patricia Martins Conde, Thomas Sauter, Thanh-Hung Nguyen
Software Mentions: 5
Published: over 3 years ago

10.1038/s42003-021-02566-4

Pseudomonas aeruginosa adapts to octenidine via a combination of efflux and membrane remodelling
Cited by: 7
Author(s): Lucy J. Bock, Philip M. Ferguson, Maria Clarke, Vichayanee Pumpitakkul, Matthew E. Wand, Paul-Enguerrand Fady, Leanne Allison, Roland A. Fleck, Matthew J. Shepherd, A. James Mason, J. Mark Sutton
Software Mentions: 5
Published: over 2 years ago

10.1186/s12859-019-3103-z

De novo Nanopore read quality improvement using deep learning
Cited by: 9
Author(s): Nathan LaPierre, Rob Egan, Wei Wang, Zhong Wang
Software Mentions: 5
Published: over 4 years ago

10.1038/s42003-021-02116-y

DNA methylation changes during long-term in vitro cell culture are caused by epigenetic drift
Cited by: 22
Author(s): Julia Franzen, Theodoros Georgomanolis, Anton Selich, Chao-Chung Kuo, Reinhard Stöger, Lilija Brant, Melita Sara Mulabdić, Eduardo Fernández-Rebollo, Clara Grezella, Alina Ostrowska, Matthias Begemann, Miloš Nikolić, Björn Rath, Anthony D. Ho, Michael Rothe, Axel Schambach, Argyris Papantonis, Wolfgang Wagner
Software Mentions: 5
Published: about 3 years ago

10.3389/fninf.2018.00015

PyMUS: Python-Based Simulation Software for Virtual Experiments on Motor Unit System
Cited by: 6
Author(s): Hojeong Kim, Minjung Kim
Software Mentions: 5
Published: about 6 years ago

10.1186/1471-2105-16-S9-S8

Automatising the analysis of stochastic biochemical time-series
Cited by: 1
Author(s): Giulio Caravagna, Luca De Sano, Marco Antoniotti
Software Mentions: 5
Published: almost 9 years ago

10.1186/s12859-020-03927-2

WACS: improving ChIP-seq peak calling by optimally weighting controls
Cited by: 2
Author(s): Aseel Awdeh, Marcel Turcotte, Theodore J. Perkins
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-019-40375-2

Transcriptome analysis of rumen epithelium and meta-transcriptome analysis of rumen epimural microbial community in young calves with feed induced acidosis
Cited by: 21
Author(s): Wenli Li, S.L. Gelsinger, Andrea Edwards, Christina Riehle, Daniel C. Koch
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-60366-y

Engineering Meteorological Features to Select Stress Tolerant Hybrids in Maize
Cited by: 6
Author(s): Gordan Mimić, Sanja Brdar, M. Brkic, Marko Panić, Oskar Marko, Vladimir Crnojević
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-018-38198-8

Spectrum of Microbial Sequences and a Bacterial Cell Wall Antigen in Primary Demyelination Brain Specimens Obtained from Living Patients
Cited by: 12
Author(s): John D. Kriesel, Preetida J. Bhetariya, Zhengming Wang, David Renner, Cheryl A. Palmer, Kael F. Fischer
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0201469

Patient-specific anatomical model for deep brain stimulation based on 7 Tesla MRI
Cited by: 55
Author(s): Yuval Duchin, Reuben R. Shamir, Rémi Patriat, Jin‐Young Kim, Jerrold L. Vitek, Guillermo Sapiro, Noam Harel
Software Mentions: 5
Published: over 5 years ago

10.1186/s12920-019-0519-2

A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies
Cited by: 7
Author(s): Joshua Mannheimer, Dawn L. Duval, Ashok Prasad, Daniel L. Gustafson
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-019-39468-9

Flexible updating of dynamic knowledge structures
Cited by: 17
Author(s): Franziska R. Richter, Paul M. Bays, Priyanga Jeyarathnarajah, Jon S. Simons
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-019-38791-5

Automated behavioural analysis reveals the basic behavioural repertoire of the urochordate Ciona intestinalis
Cited by: 25
Author(s): Jerneja Rudolf, Daniel Dondorp, Louise Canon, Sonia Tieo, Marios Chatzigeorgiou
Software Mentions: 5
Published: about 5 years ago

10.1186/s12934-021-01675-3

Automation assisted anaerobic phenotyping for metabolic engineering
Cited by: 3
Author(s): Kaushik Raj, Naveen Venayak, Patrick Diep, Sai Akhil Golla, Alexander F. Yakunin, Radhakrishnan Mahadevan
Software Mentions: 5
Published: over 2 years ago

10.1371/journal.pone.0254514

Reaching to inhibit a prepotent response: A wearable 3-axis accelerometer kinematic analysis
Cited by: 2
Author(s): Alessia Angeli, Irene Valori, Teresa Farroni, Gustavo Marfia
Software Mentions: 5
Published: almost 3 years ago

10.1038/s41598-017-17858-1

Machine Learning for Nuclear Mechano-Morphometric Biomarkers in Cancer Diagnosis
Cited by: 38
Author(s): Adityanarayanan Radhakrishnan, Karthik Damodaran, Ali C. Soylemezoglu, Caroline Uhler, G. V. Shivashankar
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-018-21874-0

Degradation shaped bacterial and archaeal communities with predictable taxa and their association patterns in Zoige wetland at Tibet plateau
Cited by: 40
Author(s): Yunfu Gu, Yan Bai, Quanju Xiang, Xiumei Yu, Ke Zhao, Xiaoping Zhang, Chaonan Li, Songqin Liu, Qiang Chen
Software Mentions: 5
Published: about 6 years ago

10.1111/acel.13230

COVID‐19 is an emergent disease of aging
Cited by: 91
Author(s): Didac Santesmasses, José Pedro Castro, Aleksandr Zenin, Anastasia V. Shindyapina, Maxim V. Gerashchenko, Bohan Zhang, Csaba Kerepesi, Sun Hee Yim, П. О. Федичев, Vadim N. Gladyshev
Software Mentions: 5
Published: over 3 years ago

10.3390/metabo11080488

Investigating Global Lipidome Alterations with the Lipid Network Explorer
Cited by: 17
Author(s): Nikolai Köhler, Tim Rose, Lisa Falk, Josch Pauling
Software Mentions: 5
Published: almost 3 years ago

10.1038/s41598-018-34115-1

Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster
Cited by: 8
Author(s): Ezequiel Názer, Ryan Dale, Cameron D. Palmer, Elissa P. Lei
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-020-6517-0

Repetitive DNA content in the maize genome is uncoupled from population stratification at SNP loci
Cited by: 2
Author(s): Simon Renny‐Byfield, Andy Baumgarten
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2017.01516

Long-term Fertilization Structures Bacterial and Archaeal Communities along Soil Depth Gradient in a Paddy Soil
Cited by: 68
Author(s): Yunfu Gu, Yingyan Wang, Liangang Shen, Quanju Xiang, Xiumei Yu, Ke Zhao, Likou Zou, Qiang Chen, Shuangshuang Tu, Xiaoping Zhang
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2018.02680

Germination and Growth Analysis of Streptomyces lividans at the Single-Cell Level Under Varying Medium Compositions
Cited by: 5
Author(s): Joachim Koepff, Christian Carsten Sachs, Wolfgang Wiechert, Dietrich Kohlheyer, Katharina Nöh, Marco Oldiges, Alexander Grünberger
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2020.603657

Human Papillomavirus Infections in Cervical Samples From HIV-Positive Women: Evaluation of the Presence of the Nonavalent HPV Genotypes and Genetic Diversity
Cited by: 3
Author(s): Catia Sias, Valerio Guarrasi, Claudia Minosse, Daniele Lapa, Franca Del Nonno, Maria Rosaria Capobianchi, Anna Rosa Garbuglia, Paola Del Porto, Paola Paci
Software Mentions: 5
Published: over 3 years ago

10.1007/s00404-020-05949-w

A risk factor analysis of complications after surgery for vulvar cancer
Cited by: 8
Author(s): Georgios Gitas, Louisa Proppe, Sascha Baum, M. Kruggel, Achim Rody, Dimitrios Tsolakidis, D Zouzoulas, Antonio Simone Laganà, V. Guenther, Damaris Freytag, İbrahim Alkatout
Software Mentions: 5
Published: over 3 years ago

10.1186/s12859-020-03801-1

PyGNA: a unified framework for geneset network analysis
Cited by: 0
Author(s): Viola Fanfani, Francesco Serra Cassano, Giovanni Stracquadanio
Software Mentions: 5
Published: over 3 years ago

10.3390/cells10061516

Statistical Approach to Incorporating Experimental Variability into a Mathematical Model of the Voltage-Gated Na+ Channel and Human Atrial Action Potential
Cited by: 0
Author(s): Daniel Gratz, Alexander Winkle, Seth H. Weinberg, Thomas J. Hund
Software Mentions: 5
Published: almost 3 years ago

10.3389/fmicb.2021.720991

The Role of Hydrophobic Nodes in the Dynamics of Class A β-Lactamases
Cited by: 5
Author(s): Edgar Olehnovics, Junqi Yin, Adrià Pérez, Gianni De Fabritiis, Robert A. Bonomo, Debsindhu Bhowmik, Shozeb Haider
Software Mentions: 5
Published: over 2 years ago

Projects: pypi: scipy

Papers Mentioning scipy 1,071