Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/ve/vex042

https://doi.org/10.1093/ve/vex042

TreeTime: Maximum-likelihood phylodynamic analysis

Cited by: 786
Author(s): Pavel Sagulenko, Vadim Puller, Richard A. Neher
Published: almost 7 years ago

Software Mentions 5

cran: LSD

Lots of Superior Depictions
Papers that mentioned: 55

pypi: FFPopSim

Library to simulate evolution of large populations that are polymorphic at many loci.
Papers that mentioned: 8

pypi: numpy

Fundamental package for array computing in Python
Papers that mentioned: 832

pypi: scipy

Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071

TreeTime is a to-do list manager, test report tool, project manager, family ancestry editor,mind-mapping tool, etc. Using TreeTime you can categorise and organise any data in tree structures.You can define several trees, each with a different structure, on the same data. You can use functions(sums, ratios and means) recursively up the branches of a tree.
Papers that mentioned: 82