Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: FFPopSim

https://packages.ecosyste.ms/registries/pypi.org/packages/FFPopSim

Library to simulate evolution of large populations that are polymorphic at many loci.
5 versions
Latest release: almost 2 years ago
183 downloads last month

Papers Mentioning FFPopSim 8

10.1093/ve/vex042

TreeTime: Maximum-likelihood phylodynamic analysis
Cited by: 786
Author(s): Pavel Sagulenko, Vadim Puller, Richard A. Neher
Software Mentions: 5
Published: almost 7 years ago

10.3389/fimmu.2013.00252

Inferring HIV Escape Rates from Multi-Locus Genotype Data
Cited by: 33
Author(s): Taylor A. Kessinger, Alan S. Perelson, Richard A. Neher
Software Mentions: 5
Published: almost 12 years ago

10.1093/bioinformatics/btx077

OncoSimulR: genetic simulation with arbitrary epistasis and mutator genes in asexual populations
Cited by: 17
Author(s): Ramón Dı́az-Uriarte
Software Mentions: 3
Published: almost 8 years ago

10.7554/eLife.03568

Predicting evolution from the shape of genealogical trees
Cited by: 151
Author(s): Richard A. Neher, Colin A. Russell, Boris I. Shraiman
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pcbi.1006413

MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
Cited by: 41
Author(s): Christos Vlachos, Robert Kofler
Software Mentions: 2
Published: over 6 years ago

10.1093/bioinformatics/bts633

FFPopSim: an efficient forward simulation package for the evolution of large populations
Cited by: 51
Author(s): Fabio Zanini, Richard A. Neher
Software Mentions: 1
Published: about 12 years ago

10.1128/mSphere.00121-18

Experimental Evolution as a High-Throughput Screen for Genetic Adaptations
Cited by: 85
Author(s): Vaughn S. Cooper
Software Mentions: 1
Published: over 6 years ago

Investigating the Consequences of Interference between Multiple CD8+ T Cell Escape Mutations in Early HIV Infection
Cited by: 194
Author(s): Víctor García, Marcus W. Feldman, Roland R. Regoes
Software Mentions: 1
Published: almost 9 years ago