Projects: pypi: scikit-learn

https://packages.ecosyste.ms/registries/pypi.org/packages/scikit-learn

A set of python modules for machine learning and data mining
72 versions
Latest release: about 3 years ago
5,918 dependent packages
43,777,417 downloads last month

Enhanced Analysis
Educational Contributors: a.joly@ulg.ac.be vanderplas@astro.washington.edu bh00038@cvplws63.eps.surrey.ac.uk ha258@cornell.edu satra@mit.edu zl2480@columbia.edu pinto@alum.mit.edu jz4721@nyu.edu matteo.visconti.gr@dartmouth.edu vighneshbirodkar@nyu.edu robert.l.marchman@dartmouth.edu rs2715@stern.nyu.edu claire.savard@colorado.edu aaaagrawal@iitb.ac.in ihaque@cs.stanford.edu rspeer@mit.edu mluessi@nmr.mgh.harvard.edu amitibo@tx.technion.ac.il ericchang2017@u.northwestern.edu jkarno@seas.upenn.edu minghui.liu@trincoll.edu m.lyra@sussex.ac.uk andrew.knyazev@ucdenver.edu lamb@cs.stanford.edu camilo@neurostat.mit.edu martino.sorbaro@ed.ac.uk t.sheerman-chase@surrey.ac.uk cgohlke@uci.edu batulaa@drexel.edu kcarnold@alum.mit.edu apw@seas.harvard.edu abie@alum.mit.edu rossbar@berkeley.edu alceballosa@unal.edu.co fhoang7@berkeley.edu hechen@seas.upenn.edu stefan@sun.ac.za deepyaman.datta@utexas.edu rebekah.kim@columbia.edu shubham.bhardwaj2015@vit.ac.in slama@berkeley.edu nisingh@wharton.upenn.edu kanikas3@vt.edu jdlabal@stanford.edu kjells@uw.edu markus.loning.17@ucl.ac.uk k_nzw@klis.tsukuba.ac.jp dkirkby@uci.edu balawson@bu.edu c.brummitt@columbia.edu choo8@illinois.edu giorgio.patrini@anu.edu.au shangwuy@andrew.cmu.edu rafael.possas@sydney.edu.au olsonran@msu.edu brian.mcfee@nyu.edu naj273@nyu.edu dgrusak@trinity.edu emd222@cornell.edu voth0@sewanee.edu trishnendu.dd2014@cs.iiests.ac.in apeng@berkeley.edu boucher@cs.umass.edu lunt@ctbp.ucsd.edu bakhbari@mgh.harvard.edu piraka@brandeis.edu neal.lathia@cl.cam.ac.uk razhoshia@post.bgu.ac.il michal.romaniuk06@ic.ac.uk m.batchkarov@sussex.ac.uk lemin@cs.colostate.edu rudvlf0413@korea.ac.kr vredev16@msu.edu raschkas@msu.edu ali.baharev@univie.ac.at a.krasoulis@sms.ed.ac.uk arokem@berkeley.edu gabrielvr@al.insper.edu.br eric.sanchez1234@email.bakersfieldcollege.edu fcchou@stanford.edu rofuyu@cs.utexas.edu glemaitre@visor.udg.edu naoyaiijima@hiroshima-u.ac.jp ayushgup@iitk.ac.in joel@vlan-2666-10-17-16-173.staff.wireless.sydney.edu.au jam7w2@mail.missouri.edu j.hale09@imperial.ac.uk tw991@nyu.edu patel_zeel@iitgn.ac.in vincent.lostanlen@nyu.edu stvjc@channing.harvard.edu ritchieng@u.nus.edu bansalsi@usc.edu rbarnes@umn.edu rrohan@cs.cmu.edu liutong.zhou@columbia.edu mdh386@nyu.edu mlf419@nyu.edu shreyave@usc.edu jin.siy@northeastern.edu samuel_ainsworth@brown.edu cwijes1@lsu.edu wadawson@ucdavis.edu xinyuliu@umich.edu rz258@cornell.edu daniel.mallia21@myhunter.cuny.edu argriffi@ncsu.edu filipj@umich.edu kms15@case.edu sam.dixon@berkeley.edu khong008@e.ntu.edu.sg jnelso11@gmu.edu jclawton@umich.edu jaehyunahn@sogang.ac.kr ijpulidos@unal.edu.co gstupp@scripps.edu justhube@umich.edu noamkeidar@campus.technion.ac.il nityamd@nyu.edu css459@nyu.edu alyee@ucsd.edu andersk@mit.edu dhanus@mit.edu coreylevinson@uchicago.edu cailean.carter@quadram.ac.uk bral4884@colorado.edu dschult@colgate.edu dpwe@ee.columbia.edu dylan.cashman@tufts.edu pawelsendyk@berkeley.edu qzhang90@gatech.edu mhaberla@calpoly.edu saketk@student.unimelb.edu.au eunjikim@dm.snu.ac.kr erinrhof@uw.edu ksivaman@purdue.edu garmstrong@ucsd.edu konstantin.shmelkov@polytechnique.edu e175774@ie.u-ryukyu.ac.jp hermidal@cs.umd.edu jbearer@hmc.edu jmarin@csail.mit.edu
Repository Activity:
Repository Owner: scikit-learn (organization)
Repositories related to the scikit-learn Python machine learning library. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +2840 Educational commit emails
    142 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +6 Science terms in README
    3 scientific terms found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem

Very Likely Science (100)

Papers Mentioning scikit-learn 2,431

10.21203/rs.3.rs-726620/v1
Gut microbiome dysbiosis during COVID-19 is associated with increased risk for bacteremia and microbial translocation.
Cited by: 27
Author(s): Mericien Venzon, Lucie Bernard-Raichon, Jonathan Klein, Jordan Axelrad, Grant A. Hussey, Alexis Sullivan, Arnau Casanovas‐Massana, María G. Noval, Ana M. Valero-Jimenez, Juan Gago, Evan Wilder, Yale Impact Team, Akiko Iwasaki, Lorna E. Thorpe, Dan R. Littman, Meike Dittmann, Kenneth A. Stapleford, Bo Shopsin, Victor J. Torres, Albert Icksang Ko, Ken Cadwell, Jonas Schluter
Software Mentions: 6
Published: over 5 years ago
10.1093/gigascience/giab058
Scalable analysis of multi-modal biomedical data
Cited by: 3
Author(s): Jaclyn Smith, Yao Shi, Michael Benedikt, Miloš Nikolić
Software Mentions: 6
Published: about 5 years ago
10.1136/gutjnl-2020-323877
Blue poo: impact of gut transit time on the gut microbiome using a novel marker
Cited by: 61
Author(s): Francesco Asnicar, Emily R Leeming, Eirini Dimidi, Mohsen Mazidi, Paul W. Franks, Haya Al Khatib, Ana M. Valdes, Richard Davies, Elco Bakker, Lucy Francis, Andrew T. Chan, Rachel Gibson, George Hadjigeorgiou, Jonathan Wolf, Timothy D. Spector, Nicola Segata, Sarah Berry
Software Mentions: 6
Published: over 5 years ago
10.1038/s41598-017-15695-w
Objective quantification of nanoscale protein distributions
Cited by: 15
Author(s): Miklos Szoboszlay, Tekla Kirizs, Zoltán Nusser
Software Mentions: 6
Published: almost 9 years ago
10.1186/s13007-020-00591-8
The BELT and phenoSEED platforms: shape and colour phenotyping of seed samples
Cited by: 18
Author(s): Keith Halcro, Kaitlin McNabb, Ashley Lockinger, Didier Socquet-Juglard, Kirstin E. Bett, Scott D. Noble
Software Mentions: 6
Published: over 6 years ago
10.1016/j.cell.2020.08.013
Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution
Cited by: 302
Author(s): Cameron Cowan, Magdalena Renner, Martina De Gennaro, Brigitte Gross-Scherf, David Goldblum, Yanyan Hou, Martin Munz, Tiago M. Rodrigues, Jacek Król, Tamás Szikra, Rachel Cuttat, Annick Waldt, Panagiotis Papasaikas, Roland Diggelmann, Claudia P. Patino-Alvarez, Patricia Galliker, Stefan Erich Spirig, Dinko Pavlinic, Nadine Gerber-Hollbach, Sven Schuierer, Aldin Srdanovic, Márton Balogh, Riccardo Panero, Ákos Kusnyerik, Arnold Szabó, Michael Stadler, Selim Orgül, Simone Picelli, Pascal W. Hasler, Andreas Hierlemann, Hendrik P. N. Scholl, Guglielmo Roma, Florian Nigsch, Botond Roska
Software Mentions: 6
Published: about 6 years ago
10.1016/j.cell.2016.09.027
Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells
Cited by: 620
Author(s): Gioele La Manno, Daniel Gyllborg, Simone Codeluppi, Kaneyasu Nishimura, Carmen Saltó, Amit Zeisel, Lars E. Borm, Simon Stott, Enrique M. Toledo, J. Carlos Villaescusa, Peter Lönnerberg, Jesper Ryge, Roger A. Barker, Ernest Arenas, Sten Linnarsson
Software Mentions: 6
Published: about 10 years ago
10.1186/s13059-019-1871-4
tmap: an integrative framework based on topological data analysis for population-scale microbiome stratification and association studies
Cited by: 17
Author(s): Tianhua Liao, Yuchen Wei, Mingjing Luo, Guoping Zhao, Haokui Zhou
Software Mentions: 6
Published: almost 7 years ago
10.1186/s13059-020-02128-7
Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis
Cited by: 15
Author(s): Félix Raimundo, Céline Vallot, Jean-Philippe Vert
Software Mentions: 6
Published: about 6 years ago
10.1186/s13059-019-1837-6
DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq data
Cited by: 162
Author(s): Cédric Arisdakessian, Olivier Poirion, Breck Yunits, Xun Zhu, Lana X. Garmire
Software Mentions: 6
Published: about 7 years ago
10.1016/j.celrep.2019.03.102
The Spectrum of Asynchronous Dynamics in Spiking Networks as a Model for the Diversity of Non-rhythmic Waking States in the Neocortex
Cited by: 14
Author(s): Yann Zerlaut, Stefano Zucca, Stefano Panzeri, Tommaso Fellin
Software Mentions: 6
Published: over 7 years ago
10.1186/s13059-021-02435-7
DeTOKI identifies and characterizes the dynamics of chromatin TAD-like domains in a single cell
Cited by: 15
Author(s): Xiao Li, Guangjie Zeng, Angsheng Li, Zhihua Zhang
Software Mentions: 6
Published: over 5 years ago
10.1186/s13550-020-00744-9
Repeatability of two semi-automatic artificial intelligence approaches for tumor segmentation in PET
Cited by: 12
Author(s): Elisabeth Pfaehler, Liesbet Mesotten, Gem Kramer, Michiel Thomeer, Karolien Vanhove, Johan de Jong, Peter Adriaensens, Otto S. Hoekstra, Ronald Boellaard
Software Mentions: 6
Published: almost 6 years ago
10.1371/journal.pone.0244175
Rapid detection of fast innovation under the pressure of COVID-19
Cited by: 11
Author(s): Nicola Melluso, Andrea Bonaccorsi, Filippo Chiarello, Gualtiero Fantoni
Software Mentions: 6
Published: almost 6 years ago
10.1038/s42003-021-02595-z
Single-cell profiling defines the prognostic benefit of CD39high tissue resident memory CD8+ T cells in luminal-like breast cancer
Cited by: 9
Author(s): Agnese Losurdo, Caterina Scirgolea, Giorgia Alvisi, Jolanda Brummelman, Valentina Errico, Luca Di Tommaso, Karolina Pilipow, Federico Colombo, Bethania Fernandes, Clelia Peano, Alberto Testori, Corrado Tinterri, Massimo Roncalli, Armando Santoro, Emilia Maria Cristina Mazza, Enrico Lugli
Software Mentions: 6
Published: about 5 years ago
10.3390/cancers12061507
Small Non-Coding RNA Profiling in Plasma Extracellular Vesicles of Bladder Cancer Patients by Next-Generation Sequencing: Expression Levels of miR-126-3p and piR-5936 Increase with Higher Histologic Grades
Cited by: 33
Author(s): Alexandru A Sabo, Giovanni Birolo, Alessio Naccarati, Mihnea P. Dragomir, Serena Aneli, Alessandra Allione, Marco Oderda, Marco Allasia, Paolo Gontero, Carlotta Sacerdote, Paolo Víneis, Giuseppe Matullo, Barbara Pardini
Software Mentions: 6
Published: over 6 years ago
10.3390/metabo11040236
Metabolite Profile of Treatment-Naive Metabolic Syndrome Subjects in Relation to Cardiovascular Disease Risk
Cited by: 5
Author(s): Moritz V. Warmbrunn, Annefleur M. Koopen, Nicolien C. de Clercq, Pieter F. de Groot, Ruud S. Kootte, Kristien E. Bouter, Kasper W. ter Horst, Annick V. Hartstra, Mireille J. Serlie, Mariëtte T. Ackermans, Maarten R. Soeters, Daniël H. van Raalte, Mark Davids, Max Nieuwdorp, Albert K. Groen
Software Mentions: 6
Published: over 5 years ago
10.2196/25000
Mortality Prediction of Patients With Cardiovascular Disease Using Medical Claims Data Under Artificial Intelligence Architectures: Validation Study
Cited by: 2
Author(s): Linh Tran, Lianhua Chi, Alessio Bonti, Mohamed Abdelrazek, Yi‐Ping Phoebe Chen
Software Mentions: 6
Published: over 5 years ago
10.1186/s13321-016-0180-0
Mapping the 3D structures of small molecule binding sites
Cited by: 13
Author(s): Joshua Meyers, Nathan Brown, Julian Blagg
Software Mentions: 6
Published: almost 10 years ago
10.1371/journal.pone.0203725
An open-source software analysis package for Microspheres with Ratiometric Barcode Lanthanide Encoding (MRBLEs)
Cited by: 15
Author(s): Björn Harink, Huy Nguyen, Kurt S. Thorn, Polly M. Fordyce
Software Mentions: 6
Published: over 7 years ago
10.1038/s41598-021-85848-5
Abnormal upregulation of cardiovascular disease biomarker PLA2G7 induced by proinflammatory macrophages in COVID-19 patients
Cited by: 18
Author(s): Yang Li, Yongzhong Jiang, Yi Zhang, Naizhe Li, Qiangling Yin, Linlin Liu, Xin Lv, Yan Liu, Aqian Li, Bin Fang, Jiajia Li, Hengping Ye, Gang Ye, Xiaoxian Cui, Yang Liu, Yuanyuan Qu, Chuan Li, Jiandong Li, Dexin Li, Zhongtao Gai, Shiwen Wang, Faxian Zhan, Mifang Liang
Software Mentions: 6
Published: over 5 years ago
10.3389/fnhum.2019.00348
EEG-Based Classification of Internally- and Externally-Directed Attention in an Augmented Reality Paradigm
Cited by: 34
Author(s): Lisa-Marie Vortmann, Felix Kroll, Felix Putze
Software Mentions: 6
Published: about 7 years ago
10.3389/fdata.2021.725095
NPARS—A Novel Approach to Address Accuracy and Reproducibility in Genomic Data Science
Cited by: 2
Author(s): Li Ma, Erich A. Peterson, Ik Jae Shin, Jason Muesse, Katy Marino, Matthew A. Steliga, Donald J. Johann
Software Mentions: 6
Published: about 5 years ago
10.1186/s13321-020-00447-2
DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniques
Cited by: 54
Author(s): Maha A. Thafar, Rawan S. Olayan, Haitham Ashoor, Somayah Albaradei, Vladimir B. Bajic, Xin Gao, Takashi Gojobori, Magbubah Essack
Software Mentions: 6
Published: over 6 years ago
10.3389/fgene.2020.00238
Detection and Comparative Analysis of Methylomic Biomarkers of Rheumatoid Arthritis
Cited by: 4
Author(s): Xin Feng, Xubing Hao, Ruoyao Shi, Zhiqiang Xia, Lan Huang, Qiong Yu, Fengfeng Zhou
Software Mentions: 6
Published: over 6 years ago
10.3389/fendo.2021.626359
Metformin Strongly Affects Gut Microbiome Composition in High-Fat Diet-Induced Type 2 Diabetes Mouse Model of Both Sexes
Cited by: 25
Author(s): Laila Silamiķele, Ivars Silamiķelis, Monta Ustinova, Zane Kalniņa, Ilze Elbere, Ramona Petrovska, Ineta Kalniņa, Jānis Kloviņš
Software Mentions: 6
Published: over 5 years ago
10.1038/s41598-021-90335-y
Whole brain functional recordings at cellular resolution in zebrafish larvae with 3D scanning multiphoton microscopy
Cited by: 15
Author(s): Matteo Bruzzone, Enrico Chiarello, Marco Albanesi, Maria Elena Miletto Petrazzini, Aram Megighian, Claudia Lodovichi, Marco Dal Maschio
Software Mentions: 6
Published: over 5 years ago
10.1186/s13321-021-00536-w
Learning protein-ligand binding affinity with atomic environment vectors
Cited by: 21
Author(s): Rocco Meli, Andrew Anighoro, Michael J. Bodkin, Garrett M. Morris, Philip C. Biggin
Software Mentions: 6
Published: about 5 years ago
10.2196/26540
Predicting Depression From Smartphone Behavioral Markers Using Machine Learning Methods, Hyperparameter Optimization, and Feature Importance Analysis: Exploratory Study
Cited by: 40
Author(s): Kennedy Opoku Asare, Yannik Terhorst, Julio Vega, Ella Peltonen, Eemil Lagerspetz, Denzil Ferreira
Software Mentions: 6
Published: over 5 years ago
10.1016/j.immuni.2019.01.001
Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation
Cited by: 322
Author(s): Ricardo J. Miragaia, Tomás Gomes, Agnieszka Chomka, Laura Jardine, Angela Riedel, Ahmed N. Hegazy, Natasha Whibley, A. Tucci, Xi Chen, Ida Lindeman, Guy Emerton, Thomas Krausgruber, Jacqueline D. Shields, Muzlifah Haniffa, Fiona Powrie, Sarah A. Teichmann
Software Mentions: 6
Published: almost 8 years ago
10.3389/fimmu.2018.02342
Supplemented Alkaline Phosphatase Supports the Immune Response in Patients Undergoing Cardiac Surgery: Clinical and Computational Evidence
Cited by: 18
Author(s): Alva Presbitero, Emiliano Mancini, Ruud Brands, Valeria V. Krzhizhanovskaya, Peter M. A. Sloot
Software Mentions: 6
Published: about 8 years ago
10.3389/fmicb.2021.617949
Compositional Data Analysis of Periodontal Disease Microbial Communities
Cited by: 9
Author(s): Laura Sisk-Hackworth, Adrian Ortiz-Velez, Micheal Reed, Scott T. Kelley
Software Mentions: 6
Published: over 5 years ago
10.3390/nu13092983
Supplementation of 1-Kestose Modulates the Gut Microbiota Composition to Ameliorate Glucose Metabolism in Obesity-Prone Hosts
Cited by: 10
Author(s): Ayako Watanabe, Takumi Tochio, Yasuhiro Kadota, Motoki Takahashi, Yasuyuki Kitaura, H. Ishikawa, Takanori Yasutake, Masahiro Nakano, Hiroe Shinohara, Toru Kudo, Yuichiro Nishimoto, Yoshinori Mizuguchi, Akihito Endo, Yoshiharu Shimomura
Software Mentions: 6
Published: about 5 years ago
10.7554/eLife.51085
CytoCensus, mapping cell identity and division in tissues and organs using machine learning
Cited by: 12
Author(s): Martin Hailstone, Dominic Waithe, Tamsin J Samuels, Yang Lu, Ita Costello, Yoav Arava, Elizabeth J. Robertson, Richard M. Parton, Ilan Davis
Software Mentions: 6
Published: over 6 years ago
10.1371/journal.pone.0236878
Modeling cannabinoids from a large-scale sample of Cannabis sativa chemotypes
Cited by: 12
Author(s): Daniela Vergara, Reggie Gaudino, Thomas Blank, Brian Keegan
Software Mentions: 6
Published: about 6 years ago
10.1038/s41598-021-82404-z
The evolution of humanitarian mapping within the OpenStreetMap community
Cited by: 53
Author(s): Benjamin Herfort, Sven Lautenbach, João Porto de Albuquerque, Jennings Anderson, Alexander Zipf
Software Mentions: 6
Published: almost 6 years ago
10.3390/ijerph18094543
A Study of the Effects of the COVID-19 Pandemic on the Experience of Back Pain Reported on Twitter® in the United States: A Natural Language Processing Approach
Cited by: 13
Author(s): Krzysztof Fiok, Waldemar Karwowski, Edgar Gutiérrez, Maham Saeidi, Awad M. Aljuaid, Mohammad Reza Davahli, Redha Taı̈ar, Tadeusz Marek, Ben D. Sawyer
Software Mentions: 6
Published: over 5 years ago
10.1186/s13326-019-0212-6
Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes
Cited by: 6
Author(s): Mercedes Arguello-Casteleiro, Robert Stevens, Julio Des-Diz, Chris Wroe, M.J. Fernandez-Prieto, Nava Maroto, Diego Maseda-Fernandez, George Demetriou, Simon Peters, P. J. W. Noble, Phil Jones, Joanna Dukes‐McEwan, Alan Radford, John Keane, Goran Nenadić
Software Mentions: 6
Published: about 7 years ago
10.1371/journal.pone.0207967
Lateral ventricle volume trajectories predict response inhibition in older age—A longitudinal brain imaging and machine learning approach
Cited by: 11
Author(s): Astri J. Lundervold, Alexandra Vik
Software Mentions: 6
Published: over 7 years ago
10.1001/jamanetworkopen.2021.8075
Assessment of Overuse of Medical Tests and Treatments at US Hospitals Using Medicare Claims
Cited by: 21
Author(s): Kelsey Chalmers, Philip E. Smith, Judith A. Garber, Valérie Gopinath, Shannon Brownlee, Allen D. Schwartz, Adam G Elshaug, Vikas Saini
Software Mentions: 6
Published: over 5 years ago
10.3389/fgene.2021.667358
Improving Genomic Prediction Using High-Dimensional Secondary Phenotypes
Cited by: 3
Author(s): Bader Arouisse, Tom P.J.M. Theeuwen, F.A. van Eeuwijk, Willem Kruijer
Software Mentions: 6
Published: over 5 years ago
10.3389/fimmu.2018.00056
The Immune and Non-Immune Pathways That Drive Chronic Gastrointestinal Helminth Burdens in the Wild
Cited by: 20
Author(s): Simon A. Babayan, Wei Liu, Graham Hamilton, Elizabeth Kilbride, Evelyn C. Rynkiewicz, Melanie Clerc, Amy B. Pedersen
Software Mentions: 6
Published: over 8 years ago
10.1186/s13321-021-00552-w
DTi2Vec: Drug–target interaction prediction using network embedding and ensemble learning
Cited by: 20
Author(s): Maha A. Thafar, Rawan S. Olayan, Somayah Albaradei, Vladimir B. Bajic, Takashi Gojobori, Magbubah Essack, Xin Gao
Software Mentions: 6
Published: about 5 years ago
10.1038/s41598-021-87064-7
Predicting the clinical management of skin lesions using deep learning
Cited by: 16
Author(s): Kumar Abhishek, Jeremy Kawahara, Ghassan Hamarneh
Software Mentions: 5
Published: over 5 years ago
10.7554/eLife.69068
Reconciling functional differences in populations of neurons recorded with two-photon imaging and electrophysiology
Cited by: 26
Author(s): Joshua H. Siegle, Peter Ledochowitsch, Xiaoxuan Jia, Daniel Millman, Gabriel Koch Ocker, Shiella Caldejon, Linzy Casal, Andy Cho, Daniel J. Denman, Séverine Durand, Peter A. Groblewski, Gregg Heller, India Kato, Sara Kivikas, Jérôme Lecoq, Chelsea Nayan, Kiet Ngo, Philip R. Nicovich, Kat North, Tamina K Ramirez, Jackie Swapp, Xana Waughman, Ali Williford, Shawn R. Olsen, Christof Koch, Michael A. Buice, Saskia E. J. de Vries
Software Mentions: 5
Published: over 5 years ago
10.3389/fimmu.2018.02059
A Distinct Esophageal mRNA Pattern Identifies Eosinophilic Esophagitis Patients With Food Impactions
Cited by: 8
Author(s): Benjamin F. Sallis, Utkucan Acar, Kelsey Hawthorne, Stephen Babcock, Cynthia Kanagaratham, Jeffrey D. Goldsmith, Rachel Rosen, Jon A. Vanderhoof, Samuel Nurko, Edda Fiebiger
Software Mentions: 5
Published: about 8 years ago
10.3390/jcdd8040044
Predicting Long-Term Mortality in TAVI Patients Using Machine Learning Techniques
Cited by: 12
Author(s): Marco Penso, Mauro Pepi, Laura Fusini, Manuela Muratori, C. Claudia, Valentina Mantegazza, Paola Gripari, Sarah Ali, Franco Fabbiocchi, Antonio L. Bartorelli, Enrico G. Caiani, Gloria Tamborini
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-020-69298-z
Standardization of brain MR images across machines and protocols: bridging the gap for MRI-based radiomics
Cited by: 121
Author(s): Alexandre Carré, G. Klausner, Myriam Edjlali, Marvin Lerousseau, Jade Briend-Diop, Roger Sun, Samy Ammari, Sylvain Reuzé, É. Alvarez Andres, Théo Estienne, S. Niyoteka, Enzo Battistella, Maria Vakalopoulou, Frédéric Dhermain, Nikos Paragios, Éric Deutsch, Catherine Oppenheim, Johan Pallud, Charlotte Robert
Software Mentions: 5
Published: over 6 years ago
10.3389/fbioe.2020.00808
Riboflow: Using Deep Learning to Classify Riboswitches With ∼99% Accuracy
Cited by: 6
Author(s): Keshav Aditya R Premkumar, Ramit Bharanikumar, Ashok Palaniappan
Software Mentions: 5
Published: over 6 years ago
10.2196/24073
A Natural Language Processing–Based Virtual Patient Simulator and Intelligent Tutoring System for the Clinical Diagnostic Process: Simulator Development and Case Study
Cited by: 14
Author(s): Raffaello Furlan, Mauro Gatti, Roberto Menè, Dana Shiffer, Chiara Marchiori, Alessandro Giaj Levra, Vincenzo Saturnino, Enrico Brunetta, Franca Dipaola
Software Mentions: 5
Published: over 5 years ago
10.1186/s13321-017-0232-0
Beyond the hype: deep neural networks outperform established methods using a ChEMBL bioactivity benchmark set
Cited by: 207
Author(s): Eelke B. Lenselink, Niels ten Dijke, Brandon J. Bongers, George Papadatos, Herman van Vlijmen, Wojtek Kowalczyk, Adriaan P. IJzerman, Gerard J. P. van Westen
Software Mentions: 5
Published: about 9 years ago
10.1371/journal.pone.0144820
CloudForest: A Scalable and Efficient Random Forest Implementation for Biological Data
Cited by: 2
Author(s): Ryan Bressler, Richard Kreisberg, Brady Bernard, John E. Niederhuber, Joseph G. Vockley, Ilya Shmulevich, Theo Knijnenburg
Software Mentions: 5
Published: almost 11 years ago
10.3390/jcm9082603
Prediction of Adverse Events in Stable Non-Variceal Gastrointestinal Bleeding Using Machine Learning
Cited by: 8
Author(s): Dong-Woo Seo, Hahn Yi, Beomhee Park, Youn-Jung Kim, Dong Hwan Jung, Ilsang Woo, Chang Hwan Sohn, Byuk Sung Ko, Namkug Kim, Won Young Kim
Software Mentions: 5
Published: about 6 years ago
10.1186/s13321-020-00420-z
COVER: conformational oversampling as data augmentation for molecules
Cited by: 19
Author(s): Jennifer Hemmerich, E. Asilar, Gerhard F. Ecker
Software Mentions: 5
Published: over 6 years ago
10.3389/fcell.2020.601145
Spontaneous Membrane Nanodomain Formation in the Absence or Presence of the Neurotransmitter Serotonin
Cited by: 11
Author(s): Anna Bochicchio, Astrid F. Brandner, Oskar Engberg, Daniel Huster, Rainer A. Böckmann
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0246396
High SARS-CoV-2 load in the nasopharynx of patients with a mild form of COVID-19 is associated with clinical deterioration regardless of the hydroxychloroquine administration
Cited by: 4
Author(s): Alexey A. Komissarov, Ivan Molodtsov, O. Ivanova, Elena Maryukhnich, Svetlana S. Kudryavtseva, А. И. Мазус, E. L. Nikonov, Elena Vasilieva
Software Mentions: 5
Published: almost 6 years ago
10.3390/nu13093289
Analyzing Type 2 Diabetes Associations with the Gut Microbiome in Individuals from Two Ethnic Backgrounds Living in the Same Geographic Area
Cited by: 13
Author(s): Manon Balvers, Mélanie Deschasaux, Bert‐Jan H. van den Born, Koos Zwinderman, Max Nieuwdorp, Evgeni Levin
Software Mentions: 5
Published: about 5 years ago
10.1186/s13321-021-00514-2
SANCDB: an update on South African natural compounds and their readily available analogs
Cited by: 22
Author(s): Bakary N'tji Diallo, Michael Glenister, Thommas M. Musyoka, Kevin A. Lobb, Özlem Tastan Bishop
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0236827
Extraction of radiographic findings from unstructured thoracoabdominal computed tomography reports using convolutional neural network based natural language processing
Cited by: 12
Author(s): Mohit Pandey, Zhuoran Xu, Evan Sholle, Gabriel Maliakal, Gurpreet Singh, Zahra Fatima, Daria Larine, Benjamin C. Lee, Jing Wang, Alexander R. van Rosendael, Leslee J. Shaw, James K. Min, Subhi J. Al’Aref
Software Mentions: 5
Published: over 6 years ago
10.1038/s41598-019-57198-w
Monitoring canid scent marking in space and time using a biologging and machine learning approach
Cited by: 8
Author(s): Owen R. Bidder, Agustina di Virgilio, J. F. Hunter, Alex McInturff, Kaitlyn M. Gaynor, Alison M. Smith, Janelle Dorcy, Frank Rosell
Software Mentions: 5
Published: almost 7 years ago
10.3389/fimmu.2019.01716
Enhanced Immunomodulation in Inflammatory Environments Favors Human Cardiac Mesenchymal Stromal-Like Cells for Allogeneic Cell Therapies
Cited by: 3
Author(s): Falk Diedrichs, Meaghan Stolk, Karsten Jürchott, Marion Haag, Michael Sittinger, Martina Seifert
Software Mentions: 5
Published: over 7 years ago
10.3389/fgene.2019.01387
Analysis of Single-Cell Gene Pair Coexpression Landscapes by Stochastic Kinetic Modeling Reveals Gene-Pair Interactions in Development
Cited by: 7
Author(s): Cameron P. Gallivan, Honglei Ren, Elizabeth L. Read
Software Mentions: 5
Published: almost 7 years ago
10.1038/s41598-020-67209-w
Laboratory culture of the California Sea Firefly Vargula tsujii (Ostracoda: Cypridinidae): Developing a model system for the evolution of marine bioluminescence
Cited by: 5
Author(s): Jessica A. Goodheart, Geetanjali Minsky, Mira N. Brynjegard-Bialik, Michael S. Drummond, Jacqueline Muñoz, Timothy R. Fallon, Darrin T. Schultz, Jing‐Ke Weng, Elizabeth Torres, Todd H. Oakley
Software Mentions: 5
Published: over 6 years ago
10.1038/s41598-020-74748-9
Dynamic changes in the brain protein interaction network correlates with progression of Aβ42 pathology in Drosophila
Cited by: 6
Author(s): Harry M. Scholes, Adam Cryar, Fiona Kerr, David Sutherland, Lee A. Gethings, Johannes P.C. Vissers, Jonathan G. Lees, Christine A. Orengo, Linda Partridge, Konstantinos Thalassinos
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pone.0201263
The mRNA cap methyltransferase gene TbCMT1 is not essential in vitro but is a virulence factor in vivo for bloodstream form Trypanosoma brucei
Cited by: 2
Author(s): Anna Kelner, Michele Tinti, Maria Lucia S. Güther, Bernardo J. Foth, Lia Chappell, Matthew Berriman, Victoria H. Cowling, Michael A. J. Ferguson
Software Mentions: 5
Published: over 8 years ago
10.3390/ijerph18189912
Assessing Patient-Perceived Hospital Service Quality and Sentiment in Malaysian Public Hospitals Using Machine Learning and Facebook Reviews
Cited by: 12
Author(s): Afiq Izzudin A. Rahim, Mohd Ismail Ibrahim, Kamarul Imran Musa, Sook-Ling Chua, Najib Majdi Yaacob
Software Mentions: 5
Published: about 5 years ago
10.3389/frma.2021.644614
PubMed-Scale Chemical Concept Embeddings Reconstruct Physical Protein Interaction Networks
Cited by: 0
Author(s): Blaž Škrlj, Enja Kokalj, Nada Lavrač
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0215137
Quanfima: An open source Python package for automated fiber analysis of biomaterials
Cited by: 14
Author(s): Roman Shkarin, Andrei Shkarin, Svetlana Shkarina, A. Cecilia, Roman A. Surmenev, Venera Weinhardt, Tilo Baumbach, Ralf Mikut
Software Mentions: 5
Published: over 7 years ago
10.3389/fpsyt.2016.00130
Development and Clinical Evaluation of an mHealth Application for Stress Management
Cited by: 26
Author(s): Brent Winslow, George L. Chadderdon, Sara Dechmerowski, David Jones, Solomon Kalkstein, Jennifer L. Greene, Philip Gehrman
Software Mentions: 5
Published: over 10 years ago
10.1371/journal.pone.0204920
Predicting acute kidney injury at hospital re-entry using high-dimensional electronic health record data
Cited by: 8
Author(s): Samuel J. Weisenthal, Caroline M. Quill, Samir A. Farooq, Henry Kautz, Martin S. Zand
Software Mentions: 5
Published: almost 8 years ago
10.1186/s12911-020-1046-y
Monitoring stance towards vaccination in twitter messages
Cited by: 20
Author(s): Florian Kunneman, Mattijs Lambooij, Albert Wong, Antal van den Bosch, Liesbeth Mollema
Software Mentions: 5
Published: over 6 years ago
10.3389/fonc.2020.531476
Application of MRI Radiomics-Based Machine Learning Model to Improve Contralateral BI-RADS 4 Lesion Assessment
Cited by: 11
Author(s): Hao Wen, Jing Gong, Shengping Wang, Hui Zhu, Bin Zhao, Weijun Peng
Software Mentions: 5
Published: about 6 years ago
10.3389/fnut.2020.577923
A Machine Learning Based Dose Prediction of Lutein Supplements for Individuals With Eye Fatigue
Cited by: 4
Author(s): Juntao Kan, Ao Li, Hong Zou, Liang Chen, Jun Du
Software Mentions: 5
Published: almost 6 years ago
10.21105/joss.00934
q2-sample-classifier: machine-learning tools for microbiome classification and regression
Cited by: 105
Author(s): Nicholas A. Bokulich, Matthew R. Dillon, Evan Bolyen, Benjamin Kaehler, Gavin A. Huttley, J. Gregory Caporaso
Software Mentions: 5
Published: about 8 years ago
10.18632/oncotarget.23748
Use of deep neural network ensembles to identify embryonic-fetal transition markers: repression of <i>COX7A1</i> in embryonic and cancer cells
Cited by: 27
Author(s): Michael West, Ivan Labat, Hal Sternberg, Dana Larocca, Igor O. Nasonkin, Karen Chapman, Ratnesh Singh, Eugene Makarev, Alex Aliper, Andrey Kazennov, Andrey Alekseenko, Nikolai Shuvalov, Evgenia Cheskidova, Aleksandr Alekseev, Artemov Av, Evgeny Putin, Polina Mamoshina, Nikita Pryanichnikov, Jacob Larocca, Karen A. F. Copeland, Evgeny Izumchenko, Mikhail Korzinkin, Alex Zhavoronkov
Software Mentions: 5
Published: almost 9 years ago
10.3390/nu12082308
Plasma Metabolites Related to Peripheral and Hepatic Insulin Sensitivity Are Not Directly Linked to Gut Microbiota Composition
Cited by: 6
Author(s): Annefleur M. Koopen, Nicolien C. de Clercq, Moritz V. Warmbrunn, Hilde Herrema, Mark Davids, Pieter F. de Groot, Ruud S. Kootte, Kristien E. Bouter, Max Nieuwdorp, Albert K. Groen, Andrei Prodan
Software Mentions: 5
Published: over 6 years ago
10.1186/s12859-019-2645-4
reactIDR: evaluation of the statistical reproducibility of high-throughput structural analyses towards a robust RNA structure prediction
Cited by: 5
Author(s): Risa Karakida Kawaguchi, Hisanori Kiryu, Junichi Iwakiri, Jun Sese
Software Mentions: 5
Published: over 7 years ago
10.1186/s12974-019-1500-x
Contribution of LTi and TH17 cells to B cell aggregate formation in the central nervous system in a mouse model of multiple sclerosis
Cited by: 18
Author(s): Verena Schropp, Jörn Rohde, Damiano M. Rovituso, Samir Jabari, Richa Bharti, Stefanie Küerten
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pntd.0004549
Transforming Clinical Data into Actionable Prognosis Models: Machine-Learning Framework and Field-Deployable App to Predict Outcome of Ebola Patients
Cited by: 52
Author(s): Andrés Colubri, Thomas Silver, Terrence Fradet, Kalliroi Retzepi, Benjamin N. Fry, Pardis C. Sabeti
Software Mentions: 5
Published: over 10 years ago
10.2196/13822
Detecting Developmental Delay and Autism Through Machine Learning Models Using Home Videos of Bangladeshi Children: Development and Validation Study
Cited by: 76
Author(s): Qandeel Tariq, Scott L. Fleming, Jessey Schwartz, Kaitlyn Dunlap, Conor K. Corbin, Peter Washington, Haik Kalantarian, Naila Zaman Khan, Gary L. Darmstadt, Dennis P. Wall
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pcbi.1005541
High-order epistasis shapes evolutionary trajectories
Cited by: 88
Author(s): Zachary Sailer, Michael J. Harms
Software Mentions: 5
Published: over 9 years ago
10.1186/s12859-020-03661-9
METROID: an automated method for robust quantification of subcellular fluorescence events at low SNR
Cited by: 0
Author(s): Marcelo Zoccoler, Pedro Xavier de Oliveira
Software Mentions: 5
Published: over 6 years ago
10.3389/fninf.2018.00089
BindsNET: A Machine Learning-Oriented Spiking Neural Networks Library in Python
Cited by: 159
Author(s): Hananel Hazan, Daniel J. Saunders, Hassaan F. Khan, Devdhar Patel, Darpan T. Sanghavi, Hava T. Siegelmann, Róbert Kozma
Software Mentions: 5
Published: almost 8 years ago
10.3390/ijms21197281
SPOTONE: Hot Spots on Protein Complexes with Extremely Randomized Trees via Sequence-Only Features
Cited by: 10
Author(s): António Preto, Irina S. Moreira
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pcbi.1007636
Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and mice
Cited by: 23
Author(s): Aleksandr Kovaltsuk, Matthew I. J. Raybould, Wing Ki Wong, Claire Marks, Sebastian Kelm, James Snowden, Johannes Trück, Charlotte M. Deane
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pcbi.1009108
Mass spectrometry and machine learning for the accurate diagnosis of benzylpenicillin and multidrug resistance of Staphylococcus aureus in bovine mastitis
Cited by: 5
Author(s): Necati Esener, Alexandre Maciel-Guerra, Katharina Giebel, Daniel Lea, Martin J. Green, Andrew J. Bradley, Tania Dottorini
Software Mentions: 5
Published: over 5 years ago
10.1186/s12911-020-01154-6
A predictive analytics model for differentiating between transient ischemic attacks (TIA) and its mimics
Cited by: 9
Author(s): Alia Stanciu, Mihai Banciu, Alireza Sadighi, Kyle Marshall, Neil R. Holland, Vida Abedi, Ramin Zand
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pcbi.1008229
DeepHE: Accurately predicting human essential genes based on deep learning
Cited by: 24
Author(s): Xue Zhang, Wangxin Xiao, Weijia Xiao
Software Mentions: 5
Published: about 6 years ago
10.1186/s12859-019-2969-0
Exploring the druggable space around the Fanconi anemia pathway using machine learning and mechanistic models
Cited by: 24
Author(s): Marina Esteban-Medina, María Peña‐Chilet, Carlos Loucera, Joaquı́n Dopazo
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pcbi.1009316
A probabilistic model for the ultradian timing of REM sleep in mice
Cited by: 6
Author(s): Sung-Ho Park, Justin Baik, June Seok Hong, Hanna Antila, Benjamin Kurland, Shinjae Chung, Franz Weber
Software Mentions: 5
Published: about 5 years ago
10.7554/eLife.66018
Information flow, cell types and stereotypy in a full olfactory connectome
Cited by: 82
Author(s): Philipp Schlegel, Alexander Shakeel Bates, Tomke Stürner, Sridhar R. Jagannathan, Nikolas Drummond, Joseph Hsu, Laia Serratosa Capdevila, Alexandre Javier, Elizabeth C. Marin, Asa Barth-Maron, Imaan F M Tamimi, Feng Li, Gerald M. Rubin, Stephen M. Plaza, Marta Costa, Gregory Jefferis
Software Mentions: 5
Published: over 5 years ago
10.2196/15371
Transfer Learning for Risk Classification of Social Media Posts: Model Evaluation Study
Cited by: 21
Author(s): Derek Howard, Marta M. Maslej, Justin Lee, Jacob Ritchie, Geoffrey Woollard, Leon French
Software Mentions: 5
Published: over 6 years ago
10.1186/s40168-021-01056-3
Anna Karenina and the subgingival microbiome associated with periodontitis
Cited by: 15
Author(s): Khaled Altabtbaei, Pooja Maney, Sukirth M. Ganesan, Shareef M Dabdoub, Haikady N. Nagaraja, Purnima Kumar
Software Mentions: 5
Published: over 5 years ago
10.3389/fninf.2019.00053
A Comparison of Shallow and Deep Learning Methods for Predicting Cognitive Performance of Stroke Patients From MRI Lesion Images
Cited by: 52
Author(s): Sucheta Chauhan, Lovekesh Vig, Michele De Filippo De Grazia, Maurizio Corbetta, Shandar Ahmad, Marco Zorzi
Software Mentions: 5
Published: over 7 years ago
10.3389/frai.2020.559617
An Interpretable Predictive Model of Vaccine Utilization for Tanzania
Cited by: 1
Author(s): R. Hariharan, Johnna Sundberg, Giacomo Gallino, Ashley Schmidt, Drew Arenth, Suvrit Sra, Benjamin Fels
Software Mentions: 5
Published: about 6 years ago
10.1186/s12911-017-0556-8
Medical subdomain classification of clinical notes using a machine learning-based natural language processing approach
Cited by: 111
Author(s): Wei-Hung Weng, Kavishwar B. Wagholikar, Alexa T. McCray, Peter Szolovits, Henry C. Chueh
Software Mentions: 5
Published: almost 9 years ago
10.3389/frai.2020.00013
Designing and Evaluating the Usability of a Machine Learning API for Rapid Prototyping Music Technology
Cited by: 5
Author(s): Francisco Bernardo, Michael Zbyszyński, Mick Grierson, Rebecca Fiebrink
Software Mentions: 5
Published: over 6 years ago
10.3389/fninf.2017.00025
Pypes: Workflows for Processing Multimodal Neuroimaging Data
Cited by: 10
Author(s): Alexandre Savio, Michael Schütte, Manuel Graña, Igor Yakushev
Software Mentions: 5
Published: over 9 years ago
10.1186/s12920-019-0519-2
A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies
Cited by: 7
Author(s): Joshua Mannheimer, Dawn L. Duval, Ashok Prasad, Daniel L. Gustafson
Software Mentions: 5
Published: over 7 years ago
10.1099/mgen.0.000500
Identifying novel β-lactamase substrate activity through in silico prediction of antimicrobial resistance
Cited by: 7
Author(s): Kara K. Tsang, Finlay Maguire, Haley L. Zubyk, Sommer Chou, Arman Edalatmand, Gerard D. Wright, Robert G. Beiko, Andrew G. McArthur
Software Mentions: 5
Published: almost 6 years ago