Projects: pypi: scikit-learn
https://packages.ecosyste.ms/registries/pypi.org/packages/scikit-learn
A set of python modules for machine learning and data mining
72 versions
Latest release: almost 3 years ago
5,918 dependent packages
43,777,417 downloads last month
Enhanced Analysis
Educational Contributors:
a.joly@ulg.ac.be
vanderplas@astro.washington.edu
bh00038@cvplws63.eps.surrey.ac.uk
ha258@cornell.edu
satra@mit.edu
zl2480@columbia.edu
pinto@alum.mit.edu
jz4721@nyu.edu
matteo.visconti.gr@dartmouth.edu
vighneshbirodkar@nyu.edu
robert.l.marchman@dartmouth.edu
rs2715@stern.nyu.edu
claire.savard@colorado.edu
aaaagrawal@iitb.ac.in
ihaque@cs.stanford.edu
rspeer@mit.edu
mluessi@nmr.mgh.harvard.edu
amitibo@tx.technion.ac.il
ericchang2017@u.northwestern.edu
jkarno@seas.upenn.edu
minghui.liu@trincoll.edu
m.lyra@sussex.ac.uk
andrew.knyazev@ucdenver.edu
lamb@cs.stanford.edu
camilo@neurostat.mit.edu
martino.sorbaro@ed.ac.uk
t.sheerman-chase@surrey.ac.uk
cgohlke@uci.edu
batulaa@drexel.edu
kcarnold@alum.mit.edu
apw@seas.harvard.edu
abie@alum.mit.edu
rossbar@berkeley.edu
alceballosa@unal.edu.co
fhoang7@berkeley.edu
hechen@seas.upenn.edu
stefan@sun.ac.za
deepyaman.datta@utexas.edu
rebekah.kim@columbia.edu
shubham.bhardwaj2015@vit.ac.in
slama@berkeley.edu
nisingh@wharton.upenn.edu
kanikas3@vt.edu
jdlabal@stanford.edu
kjells@uw.edu
markus.loning.17@ucl.ac.uk
k_nzw@klis.tsukuba.ac.jp
dkirkby@uci.edu
balawson@bu.edu
c.brummitt@columbia.edu
choo8@illinois.edu
giorgio.patrini@anu.edu.au
shangwuy@andrew.cmu.edu
rafael.possas@sydney.edu.au
olsonran@msu.edu
brian.mcfee@nyu.edu
naj273@nyu.edu
dgrusak@trinity.edu
emd222@cornell.edu
voth0@sewanee.edu
trishnendu.dd2014@cs.iiests.ac.in
apeng@berkeley.edu
boucher@cs.umass.edu
lunt@ctbp.ucsd.edu
bakhbari@mgh.harvard.edu
piraka@brandeis.edu
neal.lathia@cl.cam.ac.uk
razhoshia@post.bgu.ac.il
michal.romaniuk06@ic.ac.uk
m.batchkarov@sussex.ac.uk
lemin@cs.colostate.edu
rudvlf0413@korea.ac.kr
vredev16@msu.edu
raschkas@msu.edu
ali.baharev@univie.ac.at
a.krasoulis@sms.ed.ac.uk
arokem@berkeley.edu
gabrielvr@al.insper.edu.br
eric.sanchez1234@email.bakersfieldcollege.edu
fcchou@stanford.edu
rofuyu@cs.utexas.edu
glemaitre@visor.udg.edu
naoyaiijima@hiroshima-u.ac.jp
ayushgup@iitk.ac.in
joel@vlan-2666-10-17-16-173.staff.wireless.sydney.edu.au
jam7w2@mail.missouri.edu
j.hale09@imperial.ac.uk
tw991@nyu.edu
patel_zeel@iitgn.ac.in
vincent.lostanlen@nyu.edu
stvjc@channing.harvard.edu
ritchieng@u.nus.edu
bansalsi@usc.edu
rbarnes@umn.edu
rrohan@cs.cmu.edu
liutong.zhou@columbia.edu
mdh386@nyu.edu
mlf419@nyu.edu
shreyave@usc.edu
jin.siy@northeastern.edu
samuel_ainsworth@brown.edu
cwijes1@lsu.edu
wadawson@ucdavis.edu
xinyuliu@umich.edu
rz258@cornell.edu
daniel.mallia21@myhunter.cuny.edu
argriffi@ncsu.edu
filipj@umich.edu
kms15@case.edu
sam.dixon@berkeley.edu
khong008@e.ntu.edu.sg
jnelso11@gmu.edu
jclawton@umich.edu
jaehyunahn@sogang.ac.kr
ijpulidos@unal.edu.co
gstupp@scripps.edu
justhube@umich.edu
noamkeidar@campus.technion.ac.il
nityamd@nyu.edu
css459@nyu.edu
alyee@ucsd.edu
andersk@mit.edu
dhanus@mit.edu
coreylevinson@uchicago.edu
cailean.carter@quadram.ac.uk
bral4884@colorado.edu
dschult@colgate.edu
dpwe@ee.columbia.edu
dylan.cashman@tufts.edu
pawelsendyk@berkeley.edu
qzhang90@gatech.edu
mhaberla@calpoly.edu
saketk@student.unimelb.edu.au
eunjikim@dm.snu.ac.kr
erinrhof@uw.edu
ksivaman@purdue.edu
garmstrong@ucsd.edu
konstantin.shmelkov@polytechnique.edu
e175774@ie.u-ryukyu.ac.jp
hermidal@cs.umd.edu
jbearer@hmc.edu
jmarin@csail.mit.edu
Repository Activity:
Repository Owner:
scikit-learn (organization)
Repositories related to the scikit-learn Python machine learning library. Academic
Repositories related to the scikit-learn Python machine learning library. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+2840
Educational commit emails
142 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+6
Science terms in README
3 scientific terms found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning scikit-learn 2,431
10.3390/molecules26185574
Exploring EZH2-Proteasome Dual-Targeting Drug Discovery through a Computational Strategy to Fight Multiple MyelomaCited by: 2
Author(s): Filipe G A Estrada, Silvia Miccoli, Natália Aniceto, Alfonso T. García-Sosa, Rita C. Guedes
Software Mentions: 6
Published: almost 5 years ago
10.1016/j.cell.2020.08.013
Cell Types of the Human Retina and Its Organoids at Single-Cell ResolutionCited by: 302
Author(s): Cameron Cowan, Magdalena Renner, Martina De Gennaro, Brigitte Gross-Scherf, David Goldblum, Yanyan Hou, Martin Munz, Tiago M. Rodrigues, Jacek Król, Tamás Szikra, Rachel Cuttat, Annick Waldt, Panagiotis Papasaikas, Roland Diggelmann, Claudia P. Patino-Alvarez, Patricia Galliker, Stefan Erich Spirig, Dinko Pavlinic, Nadine Gerber-Hollbach, Sven Schuierer, Aldin Srdanovic, Márton Balogh, Riccardo Panero, Ákos Kusnyerik, Arnold Szabó, Michael Stadler, Selim Orgül, Simone Picelli, Pascal W. Hasler, Andreas Hierlemann, Hendrik P. N. Scholl, Guglielmo Roma, Florian Nigsch, Botond Roska
Software Mentions: 6
Published: about 6 years ago
10.3389/fgene.2020.00238
Detection and Comparative Analysis of Methylomic Biomarkers of Rheumatoid ArthritisCited by: 4
Author(s): Xin Feng, Xubing Hao, Ruoyao Shi, Zhiqiang Xia, Lan Huang, Qiong Yu, Fengfeng Zhou
Software Mentions: 6
Published: over 6 years ago
10.1186/s12859-019-3178-6
SIMLIN: a bioinformatics tool for prediction of S-sulphenylation in the human proteome based on multi-stage ensemble-learning modelsCited by: 8
Author(s): Xiaochuan Wang, Chen Li, Fuyi Li, Varun Sharma, Jiangning Song, Geoffrey I. Webb
Software Mentions: 6
Published: almost 7 years ago
10.1128/mSystems.00269-18
Calour: an Interactive, Microbe-Centric Analysis ToolCited by: 24
Author(s): Zhenjiang Zech Xu, Amir Almasi‐Hashiani, Jon G. Sanders, Quanyin Zhu, James T. Morton, Molly C. Bletz, Anupriya Tripathi, Shi Huang, Daniel McDonald, Lingjing Jiang, Rob Knight
Software Mentions: 6
Published: over 7 years ago
10.1016/j.cell.2016.09.027
Molecular Diversity of Midbrain Development in Mouse, Human, and Stem CellsCited by: 620
Author(s): Gioele La Manno, Daniel Gyllborg, Simone Codeluppi, Kaneyasu Nishimura, Carmen Saltó, Amit Zeisel, Lars E. Borm, Simon Stott, Enrique M. Toledo, J. Carlos Villaescusa, Peter Lönnerberg, Jesper Ryge, Roger A. Barker, Ernest Arenas, Sten Linnarsson
Software Mentions: 6
Published: almost 10 years ago
10.1016/j.celrep.2019.03.102
The Spectrum of Asynchronous Dynamics in Spiking Networks as a Model for the Diversity of Non-rhythmic Waking States in the NeocortexCited by: 14
Author(s): Yann Zerlaut, Stefano Zucca, Stefano Panzeri, Tommaso Fellin
Software Mentions: 6
Published: over 7 years ago
10.3390/v12080891
Viral Metagenomic Profiling of Croatian Bat Population Reveals Sample and Habitat Dependent DiversityCited by: 17
Author(s): Ivana Šimić, Tomaž Mark Zorec, Ivana Lojkić, Nina Krešić, Mario Poljak, Florence Cliquet, Evelyne Picard-Meyer, Marine Wasniewski, Vida Zrnčić, Anđela Čukušić, Tomislav Bedeković
Software Mentions: 6
Published: about 6 years ago
10.1128/mSystems.00145-20
Time Series Resolution of the Fish Necrobiome Reveals a Decomposer Succession Involving Toxigenic Bacterial PathogensCited by: 14
Author(s): Briallen Lobb, Rhiannon Hodgson, Michael D. J. Lynch, Michael J. Mansfield, Jiujun Cheng, Trevor C. Charles, Josh D. Neufeld, Paul M. Craig, Andrew C. Doxey
Software Mentions: 6
Published: over 6 years ago
10.1186/s13321-021-00552-w
DTi2Vec: Drug–target interaction prediction using network embedding and ensemble learningCited by: 20
Author(s): Maha A. Thafar, Rawan S. Olayan, Somayah Albaradei, Vladimir B. Bajic, Takashi Gojobori, Magbubah Essack, Xin Gao
Software Mentions: 6
Published: almost 5 years ago
10.1186/s13321-020-00447-2
DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniquesCited by: 54
Author(s): Maha A. Thafar, Rawan S. Olayan, Haitham Ashoor, Somayah Albaradei, Vladimir B. Bajic, Xin Gao, Takashi Gojobori, Magbubah Essack
Software Mentions: 6
Published: about 6 years ago
10.1186/s13321-016-0180-0
Mapping the 3D structures of small molecule binding sitesCited by: 13
Author(s): Joshua Meyers, Nathan Brown, Julian Blagg
Software Mentions: 6
Published: almost 10 years ago
10.1371/journal.pone.0244175
Rapid detection of fast innovation under the pressure of COVID-19Cited by: 11
Author(s): Nicola Melluso, Andrea Bonaccorsi, Filippo Chiarello, Gualtiero Fantoni
Software Mentions: 6
Published: over 5 years ago
10.1038/s41598-021-85848-5
Abnormal upregulation of cardiovascular disease biomarker PLA2G7 induced by proinflammatory macrophages in COVID-19 patientsCited by: 18
Author(s): Yang Li, Yongzhong Jiang, Yi Zhang, Naizhe Li, Qiangling Yin, Linlin Liu, Xin Lv, Yan Liu, Aqian Li, Bin Fang, Jiajia Li, Hengping Ye, Gang Ye, Xiaoxian Cui, Yang Liu, Yuanyuan Qu, Chuan Li, Jiandong Li, Dexin Li, Zhongtao Gai, Shiwen Wang, Faxian Zhan, Mifang Liang
Software Mentions: 6
Published: over 5 years ago
10.1093/gigascience/giab058
Scalable analysis of multi-modal biomedical dataCited by: 3
Author(s): Jaclyn Smith, Yao Shi, Michael Benedikt, Miloš Nikolić
Software Mentions: 6
Published: about 5 years ago
10.1007/s00415-020-09859-4
Posterior circulation stroke: machine learning-based detection of early ischemic changes in acute non-contrast CT scansCited by: 12
Author(s): Helge Kniep, Peter Sporns, Gabriel Broocks, André Kemmling, Jawed Nawabi, Thilo Rusche, Jens Fiehler, Uta Hanning
Software Mentions: 6
Published: over 6 years ago
10.1371/journal.pone.0207967
Lateral ventricle volume trajectories predict response inhibition in older age—A longitudinal brain imaging and machine learning approachCited by: 11
Author(s): Astri J. Lundervold, Alexandra Vik
Software Mentions: 6
Published: over 7 years ago
10.1038/s41598-019-38979-9
Integrative modeling reveals key chromatin and sequence signatures predicting super-enhancersCited by: 10
Author(s): Aziz Khan, Xuegong Zhang
Software Mentions: 6
Published: over 7 years ago
10.1523/JNEUROSCI.2317-20.2021
Disentangling Semantic Composition and Semantic Association in the Left Temporal LobeCited by: 6
Author(s): Jixing Li, Liina Pylkkänen
Software Mentions: 6
Published: about 5 years ago
10.12688/f1000research.11905.2
Virtual-screening workflow tutorials and prospective results from the Teach-Discover-Treat competition 2014 against malariaCited by: 5
Author(s): Sereina Riniker, Gregory A. Landrum, Floriane Montanari, Santiago D. Villalba, Julie Maier, Johanna M. Jansen, W. Patrick Walters, Anang A. Shelat
Software Mentions: 6
Published: over 8 years ago
10.2196/20840
Use of Patient-Reported Symptoms from an Online Symptom Tracking Tool for Dementia Severity Staging: Development and Validation of a Machine Learning ApproachCited by: 8
Author(s): Aaqib Shehzad, Kenneth Rockwood, Justin Stanley, Taylor Dunn, Susan E. Howlett
Software Mentions: 6
Published: almost 6 years ago
10.1038/s42003-021-02595-z
Single-cell profiling defines the prognostic benefit of CD39high tissue resident memory CD8+ T cells in luminal-like breast cancerCited by: 9
Author(s): Agnese Losurdo, Caterina Scirgolea, Giorgia Alvisi, Jolanda Brummelman, Valentina Errico, Luca Di Tommaso, Karolina Pilipow, Federico Colombo, Bethania Fernandes, Clelia Peano, Alberto Testori, Corrado Tinterri, Massimo Roncalli, Armando Santoro, Emilia Maria Cristina Mazza, Enrico Lugli
Software Mentions: 6
Published: almost 5 years ago
10.1007/s10710-018-9328-1
Visualising the global structure of search landscapes: genetic improvement as a case studyCited by: 12
Author(s): Nadarajen Veerapen, Gabriela Ochoa
Software Mentions: 6
Published: about 8 years ago
10.1136/gutjnl-2020-323877
Blue poo: impact of gut transit time on the gut microbiome using a novel markerCited by: 61
Author(s): Francesco Asnicar, Emily R Leeming, Eirini Dimidi, Mohsen Mazidi, Paul W. Franks, Haya Al Khatib, Ana M. Valdes, Richard Davies, Elco Bakker, Lucy Francis, Andrew T. Chan, Rachel Gibson, George Hadjigeorgiou, Jonathan Wolf, Timothy D. Spector, Nicola Segata, Sarah Berry
Software Mentions: 6
Published: over 5 years ago
10.3390/genes12071067
Total Genotype Score Modelling of Polygenic Endurance-Power Profiles in Lithuanian Elite AthletesCited by: 6
Author(s): Erinija Pranckevičienė, Valentina Ginevičienė, Audronė Jakaitienė, Laimonas Januska, Algirdas Utkus
Software Mentions: 6
Published: about 5 years ago
10.21203/rs.3.rs-726620/v1
Gut microbiome dysbiosis during COVID-19 is associated with increased risk for bacteremia and microbial translocation.Cited by: 27
Author(s): Mericien Venzon, Lucie Bernard-Raichon, Jonathan Klein, Jordan Axelrad, Grant A. Hussey, Alexis Sullivan, Arnau Casanovas‐Massana, María G. Noval, Ana M. Valero-Jimenez, Juan Gago, Evan Wilder, Yale Impact Team, Akiko Iwasaki, Lorna E. Thorpe, Dan R. Littman, Meike Dittmann, Kenneth A. Stapleford, Bo Shopsin, Victor J. Torres, Albert Icksang Ko, Ken Cadwell, Jonas Schluter
Software Mentions: 6
Published: about 5 years ago
10.1186/s13059-020-02128-7
Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysisCited by: 15
Author(s): Félix Raimundo, Céline Vallot, Jean-Philippe Vert
Software Mentions: 6
Published: about 6 years ago
10.1186/s13059-019-1871-4
tmap: an integrative framework based on topological data analysis for population-scale microbiome stratification and association studiesCited by: 17
Author(s): Tianhua Liao, Yuchen Wei, Mingjing Luo, Guoping Zhao, Haokui Zhou
Software Mentions: 6
Published: almost 7 years ago
10.1371/journal.pone.0203725
An open-source software analysis package for Microspheres with Ratiometric Barcode Lanthanide Encoding (MRBLEs)Cited by: 15
Author(s): Björn Harink, Huy Nguyen, Kurt S. Thorn, Polly M. Fordyce
Software Mentions: 6
Published: over 7 years ago
10.1186/s13059-021-02435-7
DeTOKI identifies and characterizes the dynamics of chromatin TAD-like domains in a single cellCited by: 15
Author(s): Xiao Li, Guangjie Zeng, Angsheng Li, Zhihua Zhang
Software Mentions: 6
Published: about 5 years ago
10.1038/s41598-018-29511-6
Metabolomic analysis of mouse prefrontal cortex reveals upregulated analytes during wakefulness compared to sleepCited by: 30
Author(s): Allen K. Bourdon, Giovanna Maria Spano, William Marshall, Michele Bellesi, Giulio Tononi, Pier Andrea Serra, Helen A. Baghdoyan, Ralph Lydic, Shawn R. Campagna, Chiara Cirelli
Software Mentions: 6
Published: about 8 years ago
10.3389/fpsyg.2019.02678
Multiple Negative Emotions During Learning With Digital Learning Environments – Evidence on Their Detrimental Effect on Learning From Two Methodological ApproachesCited by: 17
Author(s): Franz Wortha, Roger Azevedo, Michelle Taub, Susanne Narciss
Software Mentions: 6
Published: almost 7 years ago
10.3390/ijms21197271
LncLocation: Efficient Subcellular Location Prediction of Long Non-Coding RNA-Based Multi-Source Heterogeneous Feature FusionCited by: 9
Author(s): Shiyao Feng, Ying Li, Wei Du, Wei Lv, Ying Li
Software Mentions: 6
Published: almost 6 years ago
10.1038/s41598-017-15695-w
Objective quantification of nanoscale protein distributionsCited by: 15
Author(s): Miklos Szoboszlay, Tekla Kirizs, Zoltán Nusser
Software Mentions: 6
Published: almost 9 years ago
10.12688/f1000research.51117.1
Data extraction methods for systematic review (semi)automation: A living systematic reviewCited by: 24
Author(s): Lena Schmidt, Babatunde Kazeem Olorisade, Luke A McGuinness, James Thomas, Julian P T Higgins
Software Mentions: 6
Published: over 5 years ago
10.2196/27344
Discovery of Depression-Associated Factors From a Nationwide Population-Based Survey: Epidemiological Study Using Machine Learning and Network AnalysisCited by: 9
Author(s): Sang Min Nam, Thomas A Peterson, Kyoung Yul Seo, Hyun Wook Han, Jee In Kang
Software Mentions: 6
Published: about 5 years ago
10.1126/scitranslmed.abi9915
Antibodies elicited by mRNA-1273 vaccination bind more broadly to the receptor binding domain than do those from SARS-CoV-2 infectionCited by: 176
Author(s): Allison J Greaney, Andrea N Loes, Lauren E. Gentles, Katharine H.D. Crawford, Tyler N Starr, Keara D. Malone, Helen Y. Chu, Jesse D. Bloom
Software Mentions: 6
Published: about 5 years ago
10.1155/2021/3774607
Automated Amharic News Categorization Using Deep Learning ModelsCited by: 9
Author(s): Demeke Endalie, Getamesay Haile
Software Mentions: 6
Published: about 5 years ago
10.1371/journal.pone.0236878
Modeling cannabinoids from a large-scale sample of Cannabis sativa chemotypesCited by: 12
Author(s): Daniela Vergara, Reggie Gaudino, Thomas Blank, Brian Keegan
Software Mentions: 6
Published: about 6 years ago
10.1534/g3.114.016196
A Multipurpose, High-Throughput Single-Nucleotide Polymorphism Chip for the Dengue and Yellow Fever Mosquito, <i>Aedes aegypti</i>Cited by: 53
Author(s): Benjamin R. Evans, Andrea Gloria‐Soria, Lin Hou, Carolyn S. McBride, Mariangela Bonizzoni, Hongyu Zhao, Jeffrey R. Powell
Software Mentions: 6
Published: over 11 years ago
10.1186/s13059-019-1837-6
DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq dataCited by: 162
Author(s): Cédric Arisdakessian, Olivier Poirion, Breck Yunits, Xun Zhu, Lana X. Garmire
Software Mentions: 6
Published: almost 7 years ago
10.7554/eLife.55325
Parallel CRISPR-Cas9 screens clarify impacts of p53 on screen performanceCited by: 32
Author(s): A. Bowden, David A Morales-Juarez, Matylda Sczaniecka-Clift, Maria Martin Agudo, Natalia Lukashchuk, John Christopher Thomas, Stephen Jackson
Software Mentions: 6
Published: over 6 years ago
10.1186/s13550-020-00744-9
Repeatability of two semi-automatic artificial intelligence approaches for tumor segmentation in PETCited by: 12
Author(s): Elisabeth Pfaehler, Liesbet Mesotten, Gem Kramer, Michiel Thomeer, Karolien Vanhove, Johan de Jong, Peter Adriaensens, Otto S. Hoekstra, Ronald Boellaard
Software Mentions: 6
Published: over 5 years ago
10.3389/frma.2021.644614
PubMed-Scale Chemical Concept Embeddings Reconstruct Physical Protein Interaction NetworksCited by: 0
Author(s): Blaž Škrlj, Enja Kokalj, Nada Lavrač
Software Mentions: 5
Published: over 5 years ago
10.3390/ijms21197281
SPOTONE: Hot Spots on Protein Complexes with Extremely Randomized Trees via Sequence-Only FeaturesCited by: 10
Author(s): António Preto, Irina S. Moreira
Software Mentions: 5
Published: almost 6 years ago
10.2196/15371
Transfer Learning for Risk Classification of Social Media Posts: Model Evaluation StudyCited by: 21
Author(s): Derek Howard, Marta M. Maslej, Justin Lee, Jacob Ritchie, Geoffrey Woollard, Leon French
Software Mentions: 5
Published: over 6 years ago
10.1186/s13059-019-1858-1
Evaluating nanopore sequencing data processing pipelines for structural variation identificationCited by: 30
Author(s): Anbo Zhou, Timothy Lin, Jinchuan Xing
Software Mentions: 5
Published: almost 7 years ago
10.1038/s41598-018-32377-3
A Convenient Non-harm Cervical Spondylosis Intelligent Identity method based on Machine LearningCited by: 2
Author(s): Nana Wang, Xi Huang, Yi Rao, Jing Xiao, Junqing Lu, Nian Wang, Cui Li
Software Mentions: 5
Published: almost 8 years ago
10.1038/s41597-021-00936-5
Database of ab initio L-edge X-ray absorption near edge structureCited by: 14
Author(s): Yiming Chen, Chi Chen, Zheng Chen, Shyam Dwaraknath, Matthew K. Horton, Jordi Cabana, J. J. Rehr, John Vinson, Alan Dozier, J. J. Kas, Kristin A. Persson, Shyue Ping Ong
Software Mentions: 5
Published: over 5 years ago
10.18632/oncotarget.23748
Use of deep neural network ensembles to identify embryonic-fetal transition markers: repression of <i>COX7A1</i> in embryonic and cancer cellsCited by: 27
Author(s): Michael West, Ivan Labat, Hal Sternberg, Dana Larocca, Igor O. Nasonkin, Karen Chapman, Ratnesh Singh, Eugene Makarev, Alex Aliper, Andrey Kazennov, Andrey Alekseenko, Nikolai Shuvalov, Evgenia Cheskidova, Aleksandr Alekseev, Artemov Av, Evgeny Putin, Polina Mamoshina, Nikita Pryanichnikov, Jacob Larocca, Karen A. F. Copeland, Evgeny Izumchenko, Mikhail Korzinkin, Alex Zhavoronkov
Software Mentions: 5
Published: over 8 years ago
10.21105/joss.00934
q2-sample-classifier: machine-learning tools for microbiome classification and regressionCited by: 105
Author(s): Nicholas A. Bokulich, Matthew R. Dillon, Evan Bolyen, Benjamin Kaehler, Gavin A. Huttley, J. Gregory Caporaso
Software Mentions: 5
Published: almost 8 years ago
10.1038/sdata.2015.55
A multi-source dataset of urban life in the city of Milan and the Province of TrentinoCited by: 203
Author(s): Gianni Barlacchi, Marco De Nadai, R. Larcher, Antonio Casella, Cristiana Chitic, Giovanni Luca Torrisi, Fabrizio Antonelli, Alessandro Vespignani, Alex Pentland, Bruno Lepri
Software Mentions: 5
Published: almost 11 years ago
10.2196/15293
Detection of Suicidality Among Opioid Users on Reddit: Machine Learning–Based ApproachCited by: 24
Author(s): Hannah Yao, Sina Rashidian, Xinyu Dong, Hongyi Duanmu, Richard N. Rosenthal, Fusheng Wang
Software Mentions: 5
Published: almost 6 years ago
10.1186/s12974-019-1500-x
Contribution of LTi and TH17 cells to B cell aggregate formation in the central nervous system in a mouse model of multiple sclerosisCited by: 18
Author(s): Verena Schropp, Jörn Rohde, Damiano M. Rovituso, Samir Jabari, Richa Bharti, Stefanie Küerten
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pone.0201263
The mRNA cap methyltransferase gene TbCMT1 is not essential in vitro but is a virulence factor in vivo for bloodstream form Trypanosoma bruceiCited by: 2
Author(s): Anna Kelner, Michele Tinti, Maria Lucia S. Güther, Bernardo J. Foth, Lia Chappell, Matthew Berriman, Victoria H. Cowling, Michael A. J. Ferguson
Software Mentions: 5
Published: about 8 years ago
10.1242/dev.183855
Aging induces aberrant state transition kinetics in murine muscle stem cellsCited by: 50
Author(s): Jacob C. Kimmel, Ara B. Hwang, Annarita Scaramozza, Wallace F. Marshall, Andrew S. Brack
Software Mentions: 5
Published: over 6 years ago
10.3390/e22111198
FASTENER Feature Selection for Inference from Earth Observation DataCited by: 2
Author(s): Filip Koprivec, Klemen Kenda, Beno Šircelj
Software Mentions: 5
Published: almost 6 years ago
10.3389/frai.2021.680564
Topological Data Analysis Highlights Novel Geographical Signatures of the Human Gut MicrobiomeCited by: 3
Author(s): Eva Lymberopoulos, Giorgia Isabella Gentili, Muhannad Alomari, Nikhil Sharma
Software Mentions: 5
Published: about 5 years ago
10.7554/eLife.66018
Information flow, cell types and stereotypy in a full olfactory connectomeCited by: 82
Author(s): Philipp Schlegel, Alexander Shakeel Bates, Tomke Stürner, Sridhar R. Jagannathan, Nikolas Drummond, Joseph Hsu, Laia Serratosa Capdevila, Alexandre Javier, Elizabeth C. Marin, Asa Barth-Maron, Imaan F M Tamimi, Feng Li, Gerald M. Rubin, Stephen M. Plaza, Marta Costa, Gregory Jefferis
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-017-17858-1
Machine Learning for Nuclear Mechano-Morphometric Biomarkers in Cancer DiagnosisCited by: 38
Author(s): Adityanarayanan Radhakrishnan, Karthik Damodaran, Ali C. Soylemezoglu, Caroline Uhler, G. V. Shivashankar
Software Mentions: 5
Published: over 8 years ago
10.3390/nu12082308
Plasma Metabolites Related to Peripheral and Hepatic Insulin Sensitivity Are Not Directly Linked to Gut Microbiota CompositionCited by: 6
Author(s): Annefleur M. Koopen, Nicolien C. de Clercq, Moritz V. Warmbrunn, Hilde Herrema, Mark Davids, Pieter F. de Groot, Ruud S. Kootte, Kristien E. Bouter, Max Nieuwdorp, Albert K. Groen, Andrei Prodan
Software Mentions: 5
Published: about 6 years ago
10.1016/j.compbiomed.2015.12.002
Rapid development of image analysis research tools: Bridging the gap between researcher and clinician with pyOsiriXCited by: 33
Author(s): Matthew Blackledge, David J. Collins, Dow‐Mu Koh, Martin O. Leach
Software Mentions: 5
Published: over 10 years ago
10.7554/eLife.63856
Single-cell transcriptomes of developing and adult olfactory receptor neurons in DrosophilaCited by: 60
Author(s): Colleen N. McLaughlin, Maria Brbić, Qijing Xie, Tongchao Li, Felix Horns, Sai Saroja Kolluru, Justus M. Kebschull, David Vacek, Anthony Xie, Jiefu Li, Robert C. Jones, Jure Leskovec, Stephen R. Quake, Liqun Luo, Hongjie Li
Software Mentions: 5
Published: over 5 years ago
10.7554/eLife.63450
Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neuronsCited by: 28
Author(s): Qijing Xie, Maria Brbić, Felix Horns, Sai Saroja Kolluru, Robert C. Jones, Jiefu Li, Anay R Reddy, Anthony Xie, Sayeh Kohani, Zhuoran Li, Colleen N. McLaughlin, Tongchao Li, Chuanyun Xu, David Vacek, David J. Luginbuhl, Jure Leskovec, Stephen R. Quake, Liqun Luo, Hongjie Li
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0236827
Extraction of radiographic findings from unstructured thoracoabdominal computed tomography reports using convolutional neural network based natural language processingCited by: 12
Author(s): Mohit Pandey, Zhuoran Xu, Evan Sholle, Gabriel Maliakal, Gurpreet Singh, Zahra Fatima, Daria Larine, Benjamin C. Lee, Jing Wang, Alexander R. van Rosendael, Leslee J. Shaw, James K. Min, Subhi J. Al’Aref
Software Mentions: 5
Published: about 6 years ago
10.1186/s13059-021-02313-2
Schema: metric learning enables interpretable synthesis of heterogeneous single-cell modalitiesCited by: 19
Author(s): Rohit Singh, Brian Hie, Ashwin Narayan, Bonnie Berger
Software Mentions: 5
Published: over 5 years ago
10.1186/s13059-021-02452-6
Sfaira accelerates data and model reuse in single cell genomicsCited by: 16
Author(s): David Fischer, Leander Dony, Martin König, Abdul Moeed, Luke Zappia, Lukas Heumos, Sophie Tritschler, Olle Holmberg, Hananeh Aliee, Fabian J. Theis
Software Mentions: 5
Published: about 5 years ago
10.1186/s13059-021-02296-0
2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencingCited by: 12
Author(s): Matthew T Parker, Katarzyna Knop, Geoffrey J. Barton, Gordon G. Simpson
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-018-35682-z
MSIpred: a python package for tumor microsatellite instability classification from tumor mutation annotation data using a support vector machineCited by: 39
Author(s): Chen Wang, Chun Liang
Software Mentions: 5
Published: almost 8 years ago
10.1186/s13059-020-01977-6
Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenomeCited by: 67
Author(s): Jacob Schreiber, Timothy Durham, Jeffrey A. Bilmes, William Stafford Noble
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0246396
High SARS-CoV-2 load in the nasopharynx of patients with a mild form of COVID-19 is associated with clinical deterioration regardless of the hydroxychloroquine administrationCited by: 4
Author(s): Alexey A. Komissarov, Ivan Molodtsov, O. Ivanova, Elena Maryukhnich, Svetlana S. Kudryavtseva, А. И. Мазус, E. L. Nikonov, Elena Vasilieva
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-019-38791-5
Automated behavioural analysis reveals the basic behavioural repertoire of the urochordate Ciona intestinalisCited by: 25
Author(s): Jerneja Rudolf, Daniel Dondorp, Louise Canon, Sonia Tieo, Marios Chatzigeorgiou
Software Mentions: 5
Published: over 7 years ago
10.1186/s13059-021-02294-2
seqQscorer: automated quality control of next-generation sequencing data using machine learningCited by: 9
Author(s): Steffen Albrecht, Maximilian Sprang, Miguel A. Andrade‐Navarro, Jean-Fred Fontaine
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0144820
CloudForest: A Scalable and Efficient Random Forest Implementation for Biological DataCited by: 2
Author(s): Ryan Bressler, Richard Kreisberg, Brady Bernard, John E. Niederhuber, Joseph G. Vockley, Ilya Shmulevich, Theo Knijnenburg
Software Mentions: 5
Published: over 10 years ago
10.3389/frai.2020.536086
Attitudes Toward Multilingualism in Luxembourg. A Comparative Analysis of Online News Comments and Crowdsourced Questionnaire DataCited by: 5
Author(s): Christoph Purschke
Software Mentions: 5
Published: almost 6 years ago
10.1186/s13059-017-1196-0
The within-host population dynamics of Mycobacterium tuberculosis vary with treatment efficacyCited by: 88
Author(s): Andrej Trauner, Qingyun Liu, Laura E. Via, Xin Liu, Xianglin Ruan, Lili Liang, Huimin Shi, Ying Chen, Ziling Wang, Ruixia Liang, Wei Zhang, Wei Wang, Jingcai Gao, Gang Sun, Daniela Brites, Kathleen England, Guolong Zhang, Sébastien Gagneux, Clifton E. Barry, Qian Gao
Software Mentions: 5
Published: over 9 years ago
10.2196/13822
Detecting Developmental Delay and Autism Through Machine Learning Models Using Home Videos of Bangladeshi Children: Development and Validation StudyCited by: 76
Author(s): Qandeel Tariq, Scott L. Fleming, Jessey Schwartz, Kaitlyn Dunlap, Conor K. Corbin, Peter Washington, Haik Kalantarian, Naila Zaman Khan, Gary L. Darmstadt, Dennis P. Wall
Software Mentions: 5
Published: over 7 years ago
10.3389/frai.2020.559617
An Interpretable Predictive Model of Vaccine Utilization for TanzaniaCited by: 1
Author(s): R. Hariharan, Johnna Sundberg, Giacomo Gallino, Ashley Schmidt, Drew Arenth, Suvrit Sra, Benjamin Fels
Software Mentions: 5
Published: almost 6 years ago
10.3389/frai.2020.00013
Designing and Evaluating the Usability of a Machine Learning API for Rapid Prototyping Music TechnologyCited by: 5
Author(s): Francisco Bernardo, Michael Zbyszyński, Mick Grierson, Rebecca Fiebrink
Software Mentions: 5
Published: over 6 years ago
10.1093/gigascience/gix111
ProphTools: general prioritization tools for heterogeneous biological networksCited by: 10
Author(s): Carmen Navarro, Víctor R. Martínez, Armando Blanco, Carlos Cano
Software Mentions: 5
Published: almost 9 years ago
10.1155/2021/5522729
Prediction of COVID-19 with Computed Tomography Images using Hybrid Learning TechniquesCited by: 13
Author(s): P. Varalakshmi, Vasumathi Narayanan, Sakthi Jaya Sundar Rajasekar
Software Mentions: 5
Published: over 5 years ago
10.3390/s19030521
A Comparison of Machine Learning and Deep Learning Techniques for Activity Recognition using Mobile DevicesCited by: 37
Author(s): Alejandro Baldominos, Alejandro Cervantes, Yago Sáez, Pedro Isasi
Software Mentions: 5
Published: over 7 years ago
10.3389/fpsyt.2016.00130
Development and Clinical Evaluation of an mHealth Application for Stress ManagementCited by: 26
Author(s): Brent Winslow, George L. Chadderdon, Sara Dechmerowski, David Jones, Solomon Kalkstein, Jennifer L. Greene, Philip Gehrman
Software Mentions: 5
Published: about 10 years ago
10.1038/s41598-021-95748-3
Comparison of machine and deep learning for the classification of cervical cancer based on cervicography imagesCited by: 31
Author(s): Ye Rang Park, Young Jae Kim, Woong Ju, Kae Hyun Nam, Soonyung Kim, Kwang Gi Kim
Software Mentions: 5
Published: about 5 years ago
10.1016/j.csbj.2021.05.028
Distinguishing between PTEN clinical phenotypes through mutation analysisCited by: 14
Author(s): Stephanie Portelli, Lucy Barr, Alex Guimarães Cardoso de Sá, Douglas E. V. Pires, David B. Ascher
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0215137
Quanfima: An open source Python package for automated fiber analysis of biomaterialsCited by: 14
Author(s): Roman Shkarin, Andrei Shkarin, Svetlana Shkarina, A. Cecilia, Roman A. Surmenev, Venera Weinhardt, Tilo Baumbach, Ralf Mikut
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pone.0204920
Predicting acute kidney injury at hospital re-entry using high-dimensional electronic health record dataCited by: 8
Author(s): Samuel J. Weisenthal, Caroline M. Quill, Samir A. Farooq, Henry Kautz, Martin S. Zand
Software Mentions: 5
Published: almost 8 years ago
10.3389/fonc.2020.531476
Application of MRI Radiomics-Based Machine Learning Model to Improve Contralateral BI-RADS 4 Lesion AssessmentCited by: 11
Author(s): Hao Wen, Jing Gong, Shengping Wang, Hui Zhu, Bin Zhao, Weijun Peng
Software Mentions: 5
Published: almost 6 years ago
10.3389/fnut.2020.577923
A Machine Learning Based Dose Prediction of Lutein Supplements for Individuals With Eye FatigueCited by: 4
Author(s): Juntao Kan, Ao Li, Hong Zou, Liang Chen, Jun Du
Software Mentions: 5
Published: almost 6 years ago
10.1186/s12911-020-1046-y
Monitoring stance towards vaccination in twitter messagesCited by: 20
Author(s): Florian Kunneman, Mattijs Lambooij, Albert Wong, Antal van den Bosch, Liesbeth Mollema
Software Mentions: 5
Published: over 6 years ago
10.1186/s12859-019-2645-4
reactIDR: evaluation of the statistical reproducibility of high-throughput structural analyses towards a robust RNA structure predictionCited by: 5
Author(s): Risa Karakida Kawaguchi, Hisanori Kiryu, Junichi Iwakiri, Jun Sese
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pntd.0004549
Transforming Clinical Data into Actionable Prognosis Models: Machine-Learning Framework and Field-Deployable App to Predict Outcome of Ebola PatientsCited by: 52
Author(s): Andrés Colubri, Thomas Silver, Terrence Fradet, Kalliroi Retzepi, Benjamin N. Fry, Pardis C. Sabeti
Software Mentions: 5
Published: over 10 years ago
10.3389/fninf.2018.00089
BindsNET: A Machine Learning-Oriented Spiking Neural Networks Library in PythonCited by: 159
Author(s): Hananel Hazan, Daniel J. Saunders, Hassaan F. Khan, Devdhar Patel, Darpan T. Sanghavi, Hava T. Siegelmann, Róbert Kozma
Software Mentions: 5
Published: almost 8 years ago
10.3389/fonc.2021.604584
Analysis of Gut Microbiome Using Explainable Machine Learning Predicts Risk of Diarrhea Associated With Tyrosine Kinase Inhibitor Neratinib: A Pilot StudyCited by: 13
Author(s): Chi Wah Wong, Susan E. Yost, Jin Sung Lee, John D. Gillece, Megan Folkerts, Lauren Reining, Sarah K. Highlander, Zahra Eftekhari, Joanne Mortimer, Yuan Yuan
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pcbi.1005541
High-order epistasis shapes evolutionary trajectoriesCited by: 88
Author(s): Zachary Sailer, Michael J. Harms
Software Mentions: 5
Published: over 9 years ago
10.1186/s12859-020-03661-9
METROID: an automated method for robust quantification of subcellular fluorescence events at low SNRCited by: 0
Author(s): Marcelo Zoccoler, Pedro Xavier de Oliveira
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pcbi.1007636
Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and miceCited by: 23
Author(s): Aleksandr Kovaltsuk, Matthew I. J. Raybould, Wing Ki Wong, Claire Marks, Sebastian Kelm, James Snowden, Johannes Trück, Charlotte M. Deane
Software Mentions: 5
Published: over 6 years ago
10.1186/s12911-020-01154-6
A predictive analytics model for differentiating between transient ischemic attacks (TIA) and its mimicsCited by: 9
Author(s): Alia Stanciu, Mihai Banciu, Alireza Sadighi, Kyle Marshall, Neil R. Holland, Vida Abedi, Ramin Zand
Software Mentions: 5
Published: about 6 years ago
10.3389/fninf.2017.00025
Pypes: Workflows for Processing Multimodal Neuroimaging DataCited by: 10
Author(s): Alexandre Savio, Michael Schütte, Manuel Graña, Igor Yakushev
Software Mentions: 5
Published: over 9 years ago
10.1371/journal.pcbi.1008229
DeepHE: Accurately predicting human essential genes based on deep learningCited by: 24
Author(s): Xue Zhang, Wangxin Xiao, Weijia Xiao
Software Mentions: 5
Published: almost 6 years ago