pypi: numpy | Projects | Ecosyste.ms: Papers

10.1038/s41598-019-55777-5

Clustering of atomic displacement parameters in bovine trypsin reveals a distributed lattice of atoms with shared chemical properties
Cited by: 7
Author(s): Viktor Ahlberg Gagnér, Ida Lundholm, María-José García-Bonete, Helena Rodilla, Ran Friedman, Vitali Zhaunerchyk, Gleb Bourenkov, Thomas R. Schneider, Jan Stake, Gergely Katona
Software Mentions: 6
Published: over 4 years ago

10.3389/fnhum.2019.00348

EEG-Based Classification of Internally- and Externally-Directed Attention in an Augmented Reality Paradigm
Cited by: 34
Author(s): Lisa-Marie Vortmann, Felix Kroll, Felix Putze
Software Mentions: 6
Published: over 4 years ago

10.3389/fimmu.2021.707830

In-Depth Profiling of T-Cell Responsiveness to Commonly Recognized CMV Antigens in Older People Reveals Important Sex Differences
Cited by: 6
Author(s): Bernhard Reus, Stefano Caserta, Martin Larsen, George W. Morrow, Aalia Bano, Michael Hallensleben, Chakravarthi Rajkumar, Alejandra Pera, Florian Kern
Software Mentions: 6
Published: almost 3 years ago

10.3389/fninf.2018.00075

VIOLA—A Multi-Purpose and Web-Based Visualization Tool for Neuronal-Network Simulation Output
Cited by: 12
Author(s): Johanna Senk, Corto Carde, Espen Hagen, Torsten Kuhlen, Markus Diesmann, Benjamin Weyers
Software Mentions: 6
Published: over 5 years ago

10.1523/ENEURO.0315-18.2018

What, If Anything, Is Rodent Prefrontal Cortex?
Cited by: 271
Author(s): Mark Laubach, Linda M. Amarante, Tom Swanson, Samantha R. White
Software Mentions: 6
Published: over 5 years ago

10.1186/s13014-020-01683-4

Prostate cancer tumour control probability modelling for external beam radiotherapy based on multi-parametric MRI-GTV definition
Cited by: 6
Author(s): Ilias Sachpazidis, Panayiotis Mavroidis, Constantinos Zamboglou, Christina Marie Klein, Anca‐Ligia Grosu, Dimos Baltas
Software Mentions: 6
Published: over 3 years ago

10.3389/fncom.2014.00139

Diffusion approximation-based simulation of stochastic ion channels: which method to use?
Cited by: 8
Author(s): Danilo Pezo, Daniel Soudry, Patricio Orio
Software Mentions: 6
Published: over 9 years ago

10.1016/j.ssmph.2020.100687

Application of machine learning to understand child marriage in India
Cited by: 9
Author(s): Anita Raj, Nabamallika Dehingia, Abhishek Singh, Lotus McDougal, Julian McAuley
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pcbi.1005950

HaSAPPy: A tool for candidate identification in pooled forward genetic screens of haploid mammalian cells
Cited by: 9
Author(s): Giulio Di Minin, Andreas Postlmayr, Anton Wutz
Software Mentions: 6
Published: over 6 years ago

10.1016/j.celrep.2019.03.102

The Spectrum of Asynchronous Dynamics in Spiking Networks as a Model for the Diversity of Non-rhythmic Waking States in the Neocortex
Cited by: 14
Author(s): Yann Zerlaut, Stefano Zucca, Stefano Panzeri, Tommaso Fellin
Software Mentions: 6
Published: about 5 years ago

10.2196/20840

Use of Patient-Reported Symptoms from an Online Symptom Tracking Tool for Dementia Severity Staging: Development and Validation of a Machine Learning Approach
Cited by: 8
Author(s): Aaqib Shehzad, Kenneth Rockwood, Justin Stanley, Taylor Dunn, Susan E. Howlett
Software Mentions: 6
Published: over 3 years ago

10.3390/cells10020235

A Multimodal Platform for Simultaneous T-cell Imaging, Defined Activation, and Mechanobiological Characterization
Cited by: 4
Author(s): Martin Fölser, Viktoria Motsch, René Platzer, Johannes B. Huppa, Gerhard J. Schütz
Software Mentions: 6
Published: over 3 years ago

10.1016/j.cell.2016.09.027

Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells
Cited by: 620
Author(s): Gioele La Manno, Daniel Gyllborg, Simone Codeluppi, Kaneyasu Nishimura, Carmen Saltó, Amit Zeisel, Lars E. Borm, Simon Stott, Enrique M. Toledo, J. Carlos Villaescusa, Peter Lönnerberg, Jesper Ryge, Roger A. Barker, Ernest Arenas, Sten Linnarsson
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.ppat.1009029

Drivers of within-host genetic diversity in acute infections of viruses
Cited by: 22
Author(s): Maoz Gelbart, Sheri Harari, Ya’ara Ben-Ari, Talia Kustin, Dana Wolf, Michal Mandelboim, Orna Mor, Pleuni S. Pennings, Adi Stern
Software Mentions: 6
Published: over 3 years ago

10.3390/cancers13102447

MRI-Based Radiomics Analysis for the Pretreatment Prediction of Pathologic Complete Tumor Response to Neoadjuvant Systemic Therapy in Breast Cancer Patients: A Multicenter Study
Cited by: 16
Author(s): R. Granzier, Abdalla Ibrahim, Sergey Primakov, Sanaz Samiei, Thiemo J A van Nijnatten, Maaike de Boer, E. M. Heuts, F J Hulsmans, A. Chatterjee, Philippe Lambin, Marc Lobbes, Henry C. Woodruff, Marjolein L. Smidt
Software Mentions: 6
Published: about 3 years ago

10.1186/1471-2105-14-38

FANTOM: Functional and taxonomic analysis of metagenomes
Cited by: 34
Author(s): Kemal Sanli, Fredrik Karlsson, Intawat Nookaew, Jens Nielsen
Software Mentions: 6
Published: over 11 years ago

10.3389/fncom.2018.00083

Task-Related Synaptic Changes Localized to Small Neuronal Population in Recurrent Neural Network Cortical Models
Cited by: 6
Author(s): Satoshi Kuroki, Takuya Isomura
Software Mentions: 6
Published: over 5 years ago

10.3390/ijms21197271

LncLocation: Efficient Subcellular Location Prediction of Long Non-Coding RNA-Based Multi-Source Heterogeneous Feature Fusion
Cited by: 9
Author(s): Shiyao Feng, Ying Li, Wei Du, Wei Lv, Ying Li
Software Mentions: 6
Published: over 3 years ago

10.1016/j.jbc.2021.100804

Droplet and fibril formation of the functional amyloid Orb2
Cited by: 8
Author(s): Kidist Ashami, Alexander S. Falk, Connor Hurd, Samridhi Garg, Silvia A. Cervantes, Anoop Rawat, Ansgar B. Siemer
Software Mentions: 6
Published: almost 3 years ago

10.3389/fcell.2021.562908

FOntCell: Fusion of Ontologies of Cells
Cited by: 0
Author(s): Javier Cabau-Laporta, Alex M. Ascensión, Mikel Arrospide-Elgarresta, Daniela Gerovska, Marcos J. Araúzo‐Bravo
Software Mentions: 6
Published: over 3 years ago

10.1016/j.celrep.2018.10.073

Microanatomic Distribution of Myeloid Heme Oxygenase-1 Protects against Free Radical-Mediated Immunopathology in Human Tuberculosis
Cited by: 29
Author(s): Krishna C. Chinta, Md. Aejazur Rahman, Vikram Saini, Joel N. Glasgow, Vineel P. Reddy, Jeremie M. Lever, Shepherd Nhamoyebonde, Alasdair Leslie, Ryan M. Wells, Amie M. Traylor, Rajhmun Madansein, Gene P. Siegal, Veena B. Antony, Jessy Deshane, Gordon Wells, Kievershen Nargan, James F. George, Pratistadevi K. Ramdial, Anupam Agarwal, Adrie J. C. Steyn
Software Mentions: 6
Published: over 5 years ago

10.1093/bioinformatics/btt080

eMZed: an open source framework in Python for rapid and interactive development of LC/MS data analysis workflows
Cited by: 43
Author(s): Patrick Kiefer, Uwe Schmitt, Julia A. Vorholt
Software Mentions: 6
Published: over 11 years ago

10.3390/ijms21010269

Genome-Wide Identification and Characterization of the Mitochondrial Transcription Termination Factors (mTERFs) in Capsicum annuum L.
Cited by: 20
Author(s): Bi‐Yu Tang, Lingling Xie, Tao Yi, Junheng Lv, Huiping Yang, Xiang Cheng, Feng Liu, Xuexiao Zou
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0235159

Zooplankton biogeographic boundaries in the California Current System as determined from metabarcoding
Cited by: 13
Author(s): Kathleen J. Pitz, Jinchen Guo, Shannon B. Johnson, Tracy L. Campbell, Haibin Zhang, Robert C. Vrijenhoek, Francisco P. Chávez, Jonathan B. Geller
Software Mentions: 6
Published: almost 4 years ago

10.3389/fgene.2021.674783

Gene Loss, Pseudogenization in Plastomes of Genus Allium (Amaryllidaceae), and Putative Selection for Adaptation to Environmental Conditions
Cited by: 8
Author(s): Victoria A. Scobeyeva, Ilya V. Artyushin, A.A. Krinitsina, Nikitin Pavel, Antipin Mi, Sergei V. Kuptsov, Maxim S. Belenikin, Denis O. Omelchenko, Maria D. Logacheva, Е. А. Коноров, Andrei E. Samoilov, Anna S. Speranskaya
Software Mentions: 6
Published: almost 3 years ago

10.7554/eLife.48063

Initiation of chromosome replication controls both division and replication cycles in E. coli through a double-adder mechanism
Cited by: 44
Author(s): Guillaume Witz, Erik van Nimwegen, Thomas Julou
Software Mentions: 6
Published: over 4 years ago

10.3389/fninf.2017.00021

Reproducible Large-Scale Neuroimaging Studies with the OpenMOLE Workflow Management System
Cited by: 8
Author(s): Jonathan Passerat–Palmbach, Romain Reuillon, Mathieu Leclaire, Antonios Makropoulos, Emma C. Robinson, Sarah Parisot, Daniel Rueckert
Software Mentions: 6
Published: about 7 years ago

10.7554/eLife.55325

Parallel CRISPR-Cas9 screens clarify impacts of p53 on screen performance
Cited by: 32
Author(s): A. Bowden, David A Morales-Juarez, Matylda Sczaniecka-Clift, Maria Martin Agudo, Natalia Lukashchuk, John Christopher Thomas, Stephen Jackson
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41597-019-0261-9

A 2D hyperspectral library of mineral reflectance, from 900 to 2500 nm
Cited by: 7
Author(s): Laurent Fasnacht, Marie-Louise Vogt, Philippe Renard, Philip Brunner
Software Mentions: 6
Published: over 4 years ago

10.7554/eLife.61909

Real-time, low-latency closed-loop feedback using markerless posture tracking
Cited by: 78
Author(s): Gary A Kane, Gonçalo Lopes, Jonny L. Saunders, Alexander Mathis
Software Mentions: 6
Published: over 3 years ago

10.1186/s13059-020-02099-9

Contiguous and stochastic CHH methylation patterns of plant DRM2 and CMT2 revealed by single-read methylome analysis
Cited by: 11
Author(s): Keith D. Harris, Assaf Zemach
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0190279

pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment
Cited by: 12
Author(s): Sven Warris, N. Roshan N. Timal, Marcel Kempenaar, Arne M. Poortinga, Henri van de Geest, Ana Lucia Vărbănescu, Jan-Peter Nap
Software Mentions: 6
Published: over 6 years ago

10.7554/eLife.67176

The solubility product extends the buffering concept to heterotypic biomolecular condensates
Cited by: 19
Author(s): Aniruddha Chattaraj, Michael L. Blinov, Leslie M. Loew
Software Mentions: 6
Published: almost 3 years ago

10.3389/fbioe.2020.00453

Experimental and Model-Based Analysis to Optimize Microalgal Biomass Productivity in a Pilot-Scale Tubular Photobioreactor
Cited by: 15
Author(s): Tobias Weise, Claudia Grewe, Michael Pfaff
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0244175

Rapid detection of fast innovation under the pressure of COVID-19
Cited by: 11
Author(s): Nicola Melluso, Andrea Bonaccorsi, Filippo Chiarello, Gualtiero Fantoni
Software Mentions: 6
Published: over 3 years ago

10.3389/fimmu.2018.02342

Supplemented Alkaline Phosphatase Supports the Immune Response in Patients Undergoing Cardiac Surgery: Clinical and Computational Evidence
Cited by: 18
Author(s): Alva Presbitero, Emiliano Mancini, Ruud Brands, Valeria V. Krzhizhanovskaya, Peter M. A. Sloot
Software Mentions: 6
Published: over 5 years ago

10.7554/eLife.53933

Heterogeneous T cell motility behaviors emerge from a coupling between speed and turning in vivo
Cited by: 33
Author(s): Elizabeth R. Jerison, Stephen R. Quake
Software Mentions: 6
Published: about 4 years ago

10.7554/eLife.21887

A phylogenetic transform enhances analysis of compositional microbiota data
Cited by: 239
Author(s): Justin D. Silverman, Alex D. Washburne, Sayan Mukherjee, Lawrence A. David
Software Mentions: 6
Published: over 7 years ago

10.3390/v12080891

Viral Metagenomic Profiling of Croatian Bat Population Reveals Sample and Habitat Dependent Diversity
Cited by: 17
Author(s): Ivana Šimić, Tomaž Mark Zorec, Ivana Lojkić, Nina Krešić, Mario Poljak, Florence Cliquet, Evelyne Picard-Meyer, Marine Wasniewski, Vida Zrnčić, Anđela Čukušić, Tomislav Bedeković
Software Mentions: 6
Published: almost 4 years ago

10.15252/msb.20199146

Mammalian gene expression variability is explained by underlying cell state
Cited by: 85
Author(s): Robert T. Foreman, Roy Wollman
Software Mentions: 6
Published: over 4 years ago

10.3390/genes12071067

Total Genotype Score Modelling of Polygenic Endurance-Power Profiles in Lithuanian Elite Athletes
Cited by: 6
Author(s): Erinija Pranckevičienė, Valentina Ginevičienė, Audronė Jakaitienė, Laimonas Januska, Algirdas Utkus
Software Mentions: 6
Published: almost 3 years ago

10.1371/journal.pone.0203725

An open-source software analysis package for Microspheres with Ratiometric Barcode Lanthanide Encoding (MRBLEs)
Cited by: 15
Author(s): Björn Harink, Huy Nguyen, Kurt S. Thorn, Polly M. Fordyce
Software Mentions: 6
Published: about 5 years ago

10.1186/s12864-021-07974-8

SCReadCounts: estimation of cell-level SNVs expression from scRNA-seq data
Cited by: 8
Author(s): N M Prashant, Nawaf Alomran, Yu Chen, Hongyu Liu, Pavlos Bousounis, Mercedeh Movassagh, Nathan Edwards, Anélia Horvath
Software Mentions: 6
Published: over 2 years ago

10.12688/f1000research.11905.2

Virtual-screening workflow tutorials and prospective results from the Teach-Discover-Treat competition 2014 against malaria
Cited by: 5
Author(s): Sereina Riniker, Gregory A. Landrum, Floriane Montanari, Santiago D. Villalba, Julie Maier, Johanna M. Jansen, W. Patrick Walters, Anang A. Shelat
Software Mentions: 6
Published: about 6 years ago

10.3390/genes12030396

SMITER—A Python Library for the Simulation of LC-MS/MS Experiments
Cited by: 6
Author(s): Manuel Kösters, Johannes Leufken, Sebastian A. Leidel
Software Mentions: 6
Published: about 3 years ago

10.1093/genetics/iyab014

Split-wrmScarlet and split-sfGFP: tools for faster, easier fluorescent labeling of endogenous proteins in <i>Caenorhabditis elegans</i>
Cited by: 13
Author(s): Jérôme Goudeau, Catherine S. Sharp, Jonathan S. Paw, Laura Savy, Manuel D. Leonetti, Andrew G. York, Dustin L. Updike, Cynthia Kenyon, Maria Ingaramo
Software Mentions: 6
Published: over 3 years ago

10.1074/mcp.O117.068122

Prediction of Protein Complexes in Trypanosoma brucei by Protein Correlation Profiling Mass Spectrometry and Machine Learning
Cited by: 23
Author(s): Thomas W. M. Crozier, Michele Tinti, Mark Larance, Angus I. Lamond, Michael A. J. Ferguson
Software Mentions: 6
Published: over 6 years ago

10.3389/fphys.2018.00388

Coupled Immunological and Biomechanical Model of Emphysema Progression
Cited by: 13
Author(s): Mario Ceresa, Andy L. Olivares, Jérôme Noailly, Miguel Ángel González Ballester
Software Mentions: 6
Published: about 6 years ago

10.3389/fpls.2019.01791

iRSVPred: A Web Server for Artificial Intelligence Based Prediction of Major Basmati Paddy Seed Varieties
Cited by: 7
Author(s): Arun Sharma, D. Satish, Sushmita Sharma, Dinesh Gupta
Software Mentions: 6
Published: about 4 years ago

10.1186/s12864-017-3630-9

Interferon signaling in ascites-associated macrophages is linked to a favorable clinical outcome in a subgroup of ovarian carcinoma patients
Cited by: 42
Author(s): Till Adhikary, Annika Wortmann, Florian Finkernagel, Sonja Lieber, Andrea Nist, Thorsten Stiewe, Uwe Wagner, Sabine Müller‐Brüsselbach, Silke Reinartz, Rolf Müller
Software Mentions: 6
Published: about 7 years ago

10.1093/molbev/msz214

The Genetic Background Modulates the Evolution of Fluoroquinolone-Resistance in Mycobacterium tuberculosis
Cited by: 29
Author(s): Rhastin A D Castro, Amanda Ross, Lujeko Kamwela, Miriam Reinhard, Chloé Loiseau, Julia Feldmann, Sònia Borrell, Andrej Trauner, Sébastien Gagneux
Software Mentions: 6
Published: over 4 years ago

10.3389/fpsyt.2021.643609

Comorbid Chronic Pain and Depression: Shared Risk Factors and Differential Antidepressant Effectiveness
Cited by: 40
Author(s): William H. Roughan, Adrián I. Campos, Luis M. García-Marín, Gabriel Cuéllar-Partida, Michelle K. Lupton, Ian B. Hickie, Sarah E. Medland, Naomi R. Wray, Enda M. Byrne, Trung Thanh Ngo, Nicholas G. Martin, Miguel E. Rentería
Software Mentions: 6
Published: about 3 years ago

10.1016/j.str.2015.12.011

The Role of the Membrane in the Structure and Biophysical Robustness of the Dengue Virion Envelope
Cited by: 79
Author(s): Tyler Reddy, Mark S. P. Sansom
Software Mentions: 6
Published: about 8 years ago

10.1186/s13550-020-00744-9

Repeatability of two semi-automatic artificial intelligence approaches for tumor segmentation in PET
Cited by: 12
Author(s): Elisabeth Pfaehler, Liesbet Mesotten, Gem Kramer, Michiel Thomeer, Karolien Vanhove, Johan de Jong, Peter Adriaensens, Otto S. Hoekstra, Ronald Boellaard
Software Mentions: 6
Published: over 3 years ago

10.3389/fnins.2021.700253

Machine Learning in Modeling of Mouse Behavior
Cited by: 4
Author(s): Marjan Gharagozloo, Abdelaziz Amrani, Kevin Wittingstall, Andrew Hamilton-Wright, Denis Gris
Software Mentions: 6
Published: over 2 years ago

10.1371/journal.pone.0245157

A comparison of machine learning models versus clinical evaluation for mortality prediction in patients with sepsis
Cited by: 38
Author(s): William P T M van Doorn, Patricia M. Stassen, Hella F. Borggreve, Maaike J. Schalkwijk, Judith Stoffers, Otto Bekers, Steven J.R. Meex
Software Mentions: 6
Published: over 3 years ago

10.3390/s21134550

Evaluation of Open-Source and Pre-Trained Deep Convolutional Neural Networks Suitable for Player Detection and Motion Analysis in Squash
Cited by: 3
Author(s): Christopher Brumann, Markus Kukuk, Claus Reinsberger
Software Mentions: 6
Published: almost 3 years ago

10.15252/emmm.202013257

Urinary proteome profiling for stratifying patients with familial Parkinson’s disease
Cited by: 66
Author(s): Sebastian Virreira Winter, Özge Karayel, Mike Strauss, Shalini Padmanabhan, Matthew Surface, Kalpana Merchant, Matthias Mann
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0240802

OrganoidTracker: Efficient cell tracking using machine learning and manual error correction
Cited by: 32
Author(s): Rutger Nico Ulbe Kok, Laetitia Hebert, Guizela Huelsz-Prince, Yvonne J. Goos, Xuan Zheng, Katarzyna Bożek, Greg J. Stephens, Sander J. Tans, Jeroen S. van Zon
Software Mentions: 6
Published: over 3 years ago

10.1186/1751-0473-3-10

Flow: Statistics, visualization and informatics for flow cytometry
Cited by: 11
Author(s): Jacob Frelinger, Thomas B. Kepler, Cliburn Chan
Software Mentions: 6
Published: almost 16 years ago

10.1128/mSystems.00269-18

Calour: an Interactive, Microbe-Centric Analysis Tool
Cited by: 24
Author(s): Zhenjiang Zech Xu, Amir Almasi‐Hashiani, Jon G. Sanders, Quanyin Zhu, James T. Morton, Molly C. Bletz, Anupriya Tripathi, Shi Huang, Daniel McDonald, Lingjing Jiang, Rob Knight
Software Mentions: 6
Published: about 5 years ago

10.3390/s20092546

Mind Wandering in a Multimodal Reading Setting: Behavior Analysis & Automatic Detection Using Eye-Tracking and an EDA Sensor
Cited by: 19
Author(s): Iuliia Brishtel, Anam Ahmad Khan, Thomas Schmidt, Tilman Dingler, Shoya Ishimaru, Andreas Dengel
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-021-94105-8

Sublinear domination and core–periphery networks
Cited by: 1
Author(s): Marios Papachristou
Software Mentions: 6
Published: almost 3 years ago

10.3390/s20133647

Comparing Person-Specific and Independent Models on Subject-Dependent and Independent Human Activity Recognition Performance
Cited by: 4
Author(s): Sebastian Scheurer, Salvatore Tedesco, Brendan O’Flynn, Kenneth N. Brown
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0113838

The Connectome Visualization Utility: Software for Visualization of Human Brain Networks
Cited by: 29
Author(s): Roan A. LaPlante, Linda Douw, Wei Tang, Steven M. Stufflebeam
Software Mentions: 6
Published: over 9 years ago

10.1007/s11306-020-1640-0

Migrating from partial least squares discriminant analysis to artificial neural networks: a comparison of functionally equivalent visualisation and feature contribution tools using jupyter notebooks
Cited by: 32
Author(s): Kevin Mendez, David Broadhurst, Stacey N. Reinke
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-020-78101-y

Meta-analysis of viscosity of aqueous deep eutectic solvents and their components
Cited by: 26
Author(s): Gudrun Gygli, Xinmeng Xu, Jürgen Pleiss
Software Mentions: 6
Published: over 3 years ago

10.3390/diagnostics11040623

Impact of Chronic Prostatitis on the PI-RADS Score 3: Proposal for the Addition of a Novel Binary Suffix
Cited by: 1
Author(s): Sascha Merat, Theresa Blümlein, Markus Klarhöfer, Dominik Nickel, Gad Singer, Frank G. Zöllner, Stefan O. Schoenberg, Kubik-Huch Ra, Daniel Hausmann, Lukas Hefermehl
Software Mentions: 6
Published: about 3 years ago

10.1186/s12864-020-6481-8

Fluorescent amplification for next generation sequencing (FA-NGS) library preparation
Cited by: 5
Author(s): Jennifer Chiniquy, Megan E. Garber, Aindrila Mukhopadhyay, Nathan J. Hillson
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0257535

Recalibrating expectations about effect size: A multi-method survey of effect sizes in the ABCD study
Cited by: 60
Author(s): Max M. Owens, Alexandra Potter, Courtland S. Hyatt, Matthew D. Albaugh, Wesley K. Thompson, Terry L. Jernigan, Dekang Yuan, Sage Hahn, Nicholas Allgaier, Hugh Garavan
Software Mentions: 6
Published: over 2 years ago

10.3389/fninf.2014.00034

Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages
Cited by: 45
Author(s): Juan Nunez-Iglesias, Ryan Kennedy, Stephen M. Plaza, Anirban Chakraborty, William T. Katz
Software Mentions: 6
Published: about 10 years ago

10.3390/metabo11040236

Metabolite Profile of Treatment-Naive Metabolic Syndrome Subjects in Relation to Cardiovascular Disease Risk
Cited by: 5
Author(s): Moritz V. Warmbrunn, Annefleur M. Koopen, Nicolien C. de Clercq, Pieter F. de Groot, Ruud S. Kootte, Kristien E. Bouter, Kasper W. ter Horst, Annick V. Hartstra, Mireille J. Serlie, Mariëtte T. Ackermans, Maarten R. Soeters, Daniël H. van Raalte, Mark Davids, Max Nieuwdorp, Albert K. Groen
Software Mentions: 6
Published: about 3 years ago

10.3389/fcell.2019.00141

Single Cell Imaging of Nuclear Architecture Changes
Cited by: 17
Author(s): Rikke Morrish, Michael Hermes, Jeremy Metz, Edwin M. Stone, Stefano Pagliara, Richard Chahwan, Francesca Palombo
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-020-63036-1

Hierarchical clustering of MS/MS spectra from the firefly metabolome identifies new lucibufagin compounds
Cited by: 12
Author(s): C. J. Rawlinson, Darcy A. B. Jones, S. Rakshit, Shiv Meka, Caroline S. Moffat, Paula Moolhuijzen
Software Mentions: 6
Published: about 4 years ago

10.3390/md17020081

Predicting Blood–Brain Barrier Permeability of Marine-Derived Kinase Inhibitors Using Ensemble Classifiers Reveals Potential Hits for Neurodegenerative Disorders
Cited by: 28
Author(s): Fabien Plisson, Andrew M. Piggott
Software Mentions: 6
Published: over 5 years ago

10.1186/s12864-017-3860-x

Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction
Cited by: 29
Author(s): Hideaki Hiraki, Hiroshi Kagoshima, Christopher Kraus, Philipp H. Schiffer, Yumiko Ueta, Michael Kroiher, Einhard Schierenberg, Yuji Kohara
Software Mentions: 6
Published: almost 7 years ago

10.3389/fninf.2020.00031

Pycabnn: Efficient and Extensible Software to Construct an Anatomical Basis for a Physiologically Realistic Neural Network Model
Cited by: 4
Author(s): Ines Wichert, Sanghun Jee, Erik De Schutter, Sungho Hong
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pgen.1009591

RDC complex executes a dynamic piRNA program during Drosophila spermatogenesis to safeguard male fertility
Cited by: 17
Author(s): Peiwei Chen, Yicheng Luo, Alexei A. Aravin
Software Mentions: 6
Published: over 2 years ago

10.1093/database/baab039

Automatization and self-maintenance of the O-GlcNAcome catalog: a smart scientific database
Cited by: 9
Author(s): Florian Malard, Eugenia Wulff‐Fuentes, Rex Berendt, Guillaume Didier, Stéphanie Olivier-Van Stichelen
Software Mentions: 6
Published: over 3 years ago

10.3390/s21062039

Detecting Anomalous Transactions via an IoT Based Application: A Machine Learning Approach for Horse Racing Betting
Cited by: 2
Author(s): Moohong Min, Jemin Justin Lee, Hyunbeom Park, Kyung-Ho Lee
Software Mentions: 6
Published: about 3 years ago

10.3390/life11040278

Epigenetic Characteristics of Human Subtelomeres Vary in Cells Utilizing the Alternative Lengthening of Telomeres (ALT) Pathway
Cited by: 1
Author(s): Shir Toubiana, Aya Tzur-Gilat, Sara Selig
Software Mentions: 5
Published: about 3 years ago

10.1038/s41598-019-39276-1

Insights into the antigenic advancement of influenza A(H3N2) viruses, 2011–2018
Cited by: 45
Author(s): Patricia A. Jorquera, Vasiliy P. Mishin, Anton Chesnokov, Ha Nguyen, Brian R. Mann, Rebecca Garten, John Barnes, Erin Hodges, Juan de la Cruz, Xinhua Xu, Jackie Katz, David E. Wentworth, Larisa V. Gubareva
Software Mentions: 5
Published: about 5 years ago

10.1186/s12896-019-0535-5

VARSCOT: variant-aware detection and scoring enables sensitive and personalized off-target detection for CRISPR-Cas9
Cited by: 6
Author(s): Laurence O.W. Wilson, Sara Hetzel, Christopher Pockrandt, Knut Reinert, Denis C. Bauer
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pcbi.1009346

The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout
Cited by: 48
Author(s): Nicolò Gozzi, Paolo Bajardi, Nicola Perra
Software Mentions: 5
Published: over 2 years ago

10.3389/fmicb.2018.02680

Germination and Growth Analysis of Streptomyces lividans at the Single-Cell Level Under Varying Medium Compositions
Cited by: 5
Author(s): Joachim Koepff, Christian Carsten Sachs, Wolfgang Wiechert, Dietrich Kohlheyer, Katharina Nöh, Marco Oldiges, Alexander Grünberger
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1005315

Novel Models of Visual Topographic Map Alignment in the Superior Colliculus
Cited by: 10
Author(s): Ruben A. Tikidji-Hamburyan, Tarek El‐Ghazawi, Jason W. Triplett
Software Mentions: 5
Published: over 7 years ago

10.1093/bib/bbab055

RNA2HLA: HLA-based quality control of RNA-seq datasets
Cited by: 9
Author(s): Irina Chelysheva, Andrew J. Pollard, Daniel O’Connor
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pcbi.1005541

High-order epistasis shapes evolutionary trajectories
Cited by: 88
Author(s): Zachary Sailer, Michael J. Harms
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pcbi.1007438

Humans adapt their anticipatory eye movements to the volatility of visual motion properties
Cited by: 8
Author(s): Chloé Pasturel, Anna Montagnini, Laurent Perrinet
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-018-38198-8

Spectrum of Microbial Sequences and a Bacterial Cell Wall Antigen in Primary Demyelination Brain Specimens Obtained from Living Patients
Cited by: 12
Author(s): John D. Kriesel, Preetida J. Bhetariya, Zhengming Wang, David Renner, Cheryl A. Palmer, Kael F. Fischer
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-39468-9

Flexible updating of dynamic knowledge structures
Cited by: 17
Author(s): Franziska R. Richter, Paul M. Bays, Priyanga Jeyarathnarajah, Jon S. Simons
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pcbi.1002628

Hybrid Models and Biological Model Reduction with PyDSTool
Cited by: 71
Author(s): Robert Clewley
Software Mentions: 5
Published: almost 12 years ago

10.3389/fmicb.2020.603657

Human Papillomavirus Infections in Cervical Samples From HIV-Positive Women: Evaluation of the Presence of the Nonavalent HPV Genotypes and Genetic Diversity
Cited by: 3
Author(s): Catia Sias, Valerio Guarrasi, Claudia Minosse, Daniele Lapa, Franca Del Nonno, Maria Rosaria Capobianchi, Anna Rosa Garbuglia, Paola Del Porto, Paola Paci
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-019-38791-5

Automated behavioural analysis reveals the basic behavioural repertoire of the urochordate Ciona intestinalis
Cited by: 25
Author(s): Jerneja Rudolf, Daniel Dondorp, Louise Canon, Sonia Tieo, Marios Chatzigeorgiou
Software Mentions: 5
Published: about 5 years ago

10.3389/fnhum.2021.700281

A Neural Network Model of Lexical-Semantic Competition During Spoken Word Recognition
Cited by: 3
Author(s): Mihaela Duta, Kim Plunkett
Software Mentions: 5
Published: over 2 years ago

10.3389/fimmu.2013.00252

Inferring HIV Escape Rates from Multi-Locus Genotype Data
Cited by: 33
Author(s): Taylor A. Kessinger, Alan S. Perelson, Richard A. Neher
Software Mentions: 5
Published: over 11 years ago

10.1186/s12859-018-2092-7

An interpretable framework for clustering single-cell RNA-Seq datasets
Cited by: 46
Author(s): Jesse M. Zhang, Jue Fan, H. Christina Fan, David Rosenfeld, David Tse
Software Mentions: 5
Published: about 6 years ago

10.3389/fimmu.2018.02059

A Distinct Esophageal mRNA Pattern Identifies Eosinophilic Esophagitis Patients With Food Impactions
Cited by: 8
Author(s): Benjamin F. Sallis, Utkucan Acar, Kelsey Hawthorne, Stephen Babcock, Cynthia Kanagaratham, Jeffrey D. Goldsmith, Rachel Rosen, Jon A. Vanderhoof, Samuel Nurko, Edda Fiebiger
Software Mentions: 5
Published: over 5 years ago

10.1038/s42003-021-02566-4

Pseudomonas aeruginosa adapts to octenidine via a combination of efflux and membrane remodelling
Cited by: 7
Author(s): Lucy J. Bock, Philip M. Ferguson, Maria Clarke, Vichayanee Pumpitakkul, Matthew E. Wand, Paul-Enguerrand Fady, Leanne Allison, Roland A. Fleck, Matthew J. Shepherd, A. James Mason, J. Mark Sutton
Software Mentions: 5
Published: over 2 years ago

10.3389/fgene.2019.01387

Analysis of Single-Cell Gene Pair Coexpression Landscapes by Stochastic Kinetic Modeling Reveals Gene-Pair Interactions in Development
Cited by: 7
Author(s): Cameron P. Gallivan, Honglei Ren, Elizabeth L. Read
Software Mentions: 5
Published: over 4 years ago

Projects: pypi: numpy

Papers Mentioning numpy 832