pypi: matplotlib | Projects | Ecosyste.ms: Papers

10.1093/gigascience/giaa008

GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms
Cited by: 77
Author(s): Patrick Browne, Tue Kjærgaard Nielsen, Witold Kot, Anni Aggerholm, M. Thomas P. Gilbert, Lara Puetz, Morten Rasmussen, Athanasios Zervas, Lars Hestbjerg Hansen
Software Mentions: 5
Published: almost 5 years ago

10.1186/s40168-021-01119-5

Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage
Cited by: 16
Author(s): Dominique Le Bœuf, John M. Eppley, Daniel Mende, Rex R. Malmstrom, Tanja Woyke, Edward F. DeLong
Software Mentions: 5
Published: over 3 years ago

10.1186/s13073-020-00747-0

Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale
Cited by: 37
Author(s): Soumaya Zlitni, Alex Bishara, Eli L. Moss, Е. И. Ткаченко, Joyce B. Kang, Rebecca Culver, Tessa M. Andermann, Ziming Weng, Christina M. Wood, Christine Handy, Hanlee P. Ji, Serafim Batzoglou, Ami S. Bhatt
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.54026

A decentralised neural model explaining optimal integration of navigational strategies in insects
Cited by: 52
Author(s): Xuelong Sun, Shigang Yue, Michael Mangan
Software Mentions: 5
Published: over 4 years ago

10.1186/s12859-020-03801-1

PyGNA: a unified framework for geneset network analysis
Cited by: 0
Author(s): Viola Fanfani, Francesco Serra Cassano, Giovanni Stracquadanio
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0201263

The mRNA cap methyltransferase gene TbCMT1 is not essential in vitro but is a virulence factor in vivo for bloodstream form Trypanosoma brucei
Cited by: 2
Author(s): Anna Kelner, Michele Tinti, Maria Lucia S. Güther, Bernardo J. Foth, Lia Chappell, Matthew Berriman, Victoria H. Cowling, Michael A. J. Ferguson
Software Mentions: 5
Published: over 6 years ago

10.3389/fgene.2019.01387

Analysis of Single-Cell Gene Pair Coexpression Landscapes by Stochastic Kinetic Modeling Reveals Gene-Pair Interactions in Development
Cited by: 7
Author(s): Cameron P. Gallivan, Honglei Ren, Elizabeth L. Read
Software Mentions: 5
Published: almost 5 years ago

10.7554/eLife.51179

Structure of a mitochondrial ATP synthase with bound native cardiolipin
Cited by: 65
Author(s): A. Muhleip, Sarah McComas, Alexey Amunts
Software Mentions: 5
Published: about 5 years ago

10.3390/cells9020323

Painting of Fourth and the X-Linked 1.688 Satellite in D. melanogaster Is Involved in Chromosome-Wide Gene Regulation
Cited by: 6
Author(s): Samaneh Ekhteraei-Tousi, Jacob Lewerentz, Jonas Larsson
Software Mentions: 5
Published: almost 5 years ago

10.1093/gigascience/gix111

ProphTools: general prioritization tools for heterogeneous biological networks
Cited by: 10
Author(s): Carmen Navarro, Víctor R. Martínez, Armando Blanco, Carlos Cano
Software Mentions: 5
Published: almost 7 years ago

10.3390/antiox10081278

Vitamin C Supplementation in Healthy Individuals Leads to Shifts of Bacterial Populations in the Gut—A Pilot Study
Cited by: 29
Author(s): Antonius T. Otten, Arno R. Bourgonje, Vera Peters, Behrooz Z. Alizadeh, Gerard Dijkstra, Hermie J. M. Harmsen
Software Mentions: 5
Published: over 3 years ago

10.7554/eLife.02200

Global analysis of p53-regulated transcription identifies its direct targets and unexpected regulatory mechanisms
Cited by: 206
Author(s): Mary A. Allen, Zdeněk Andrysík, Veronica L. Dengler, Hestia Mellert, Anna L. Guarnieri, John H. Freeman, Kelly D. Sullivan, Matthew D. Galbraith, Xin Luo, W. Lee Kraus, Robin D. Dowell, Joaquín M. Espinosa
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0081462

Estimation of the Horizon in Photographed Outdoor Scenes by Human and Machine
Cited by: 5
Author(s): Christian Herdtweck, Christian Wallraven
Software Mentions: 5
Published: almost 11 years ago

10.1128/mSystems.00230-18

Emergent Subpopulation Behavior Uncovered with a Community Dynamic Metabolic Model of Escherichia coli Diauxic Growth
Cited by: 74
Author(s): A. Succurro, Daniel Segrè, Oliver Ebenhöh
Software Mentions: 5
Published: over 5 years ago

10.1107/S2052252517006212

Healing X-ray scattering images
Cited by: 10
Author(s): Jiliang Liu, Julien Lhermitte, Ye Tian, Zheng Zhang, D. Yu, Kevin G. Yager
Software Mentions: 5
Published: over 7 years ago

10.1128/mBio.03109-19

A Multiplex Fluidic Chip for Rapid Phenotypic Antibiotic Susceptibility Testing
Cited by: 16
Author(s): Pikkei Wistrand-Yuen, Christer Malmberg, Nikos Fatsis-Kavalopoulos, Moritz Lübke, Thomas Tängdén, Johan Kreuger
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0256503

PyPlutchik: Visualising and comparing emotion-annotated corpora
Cited by: 16
Author(s): Alfonso Semeraro, Salvatore Vilella, Giancarlo Ruffo
Software Mentions: 5
Published: about 3 years ago

10.1128/mSphere.00005-17

Divergent Relationships between Fecal Microbiota and Metabolome following Distinct Antibiotic-Induced Disruptions
Cited by: 28
Author(s): Jocelyn M. Choo, Tokuwa Kanno, Nur Masirah M. Zain, Lex E. X. Leong, Guy C. J. Abell, Julie Keeble, Kenneth D. Bruce, A. James Mason, Geraint B. Rogers
Software Mentions: 5
Published: over 7 years ago

10.3390/antibiotics10040419

Combining Functional Genomics and Whole-Genome Sequencing to Detect Antibiotic Resistance Genes in Bacterial Strains Co-Occurring Simultaneously in a Brazilian Hospital
Cited by: 3
Author(s): Tiago Cabral Borelli, Gabriel Lencioni Lovate, Ana Flavia Tonelli Scaranello, Lucas F. Ribeiro, Livia S. Zaramela, Felipe Marcelo Pereira-dos-Santos, Rafael Silva‐Rocha, María‐Eugenia Guazzaroni
Software Mentions: 5
Published: over 3 years ago

10.3390/ma14102543

Application of Selective Induction Heating for Improvement of Mechanical Properties of Elastic Hinges
Cited by: 5
Author(s): Paweł Muszyński, Przemysław Poszwa, Andrzej Gessner, Krzysztof Mrozek
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0215054

Numerical simulations for the Toda lattices Hamiltonian system: Higher order symplectic illustrative perspective
Cited by: 1
Author(s): Asif Mushtaq, Amna Noreen, Muhammad Farooq
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0201469

Patient-specific anatomical model for deep brain stimulation based on 7 Tesla MRI
Cited by: 55
Author(s): Yuval Duchin, Reuben R. Shamir, Rémi Patriat, Jin‐Young Kim, Jerrold L. Vitek, Guillermo Sapiro, Noam Harel
Software Mentions: 5
Published: over 6 years ago

10.3389/fcvm.2021.663509

Development and Validation of a Random Forest Diagnostic Model of Acute Myocardial Infarction Based on Ferroptosis-Related Genes in Circulating Endothelial Cells
Cited by: 14
Author(s): Yifan Chen, Jianfeng Shi, Jun Pu
Software Mentions: 5
Published: over 3 years ago

10.3389/frai.2020.559617

An Interpretable Predictive Model of Vaccine Utilization for Tanzania
Cited by: 1
Author(s): R. Hariharan, Johnna Sundberg, Giacomo Gallino, Ashley Schmidt, Drew Arenth, Suvrit Sra, Benjamin Fels
Software Mentions: 5
Published: about 4 years ago

10.3389/fncel.2017.00332

Heterogeneity of the Axon Initial Segment in Interneurons and Pyramidal Cells of Rodent Visual Cortex
Cited by: 54
Author(s): Felix Höfflin, Alexander Jack, Christian Riedel, Julia Angela Mack-Bucher, Johannes Roos, Corinna Corcelli, Christian Schultz, Petra Wahle, Maren Engelhardt
Software Mentions: 5
Published: about 7 years ago

10.1007/s10334-020-00900-1

Simulated basis sets for semi-LASER: the impact of including shaped RF pulses and magnetic field gradients
Cited by: 3
Author(s): Oscar Jalnefjord, Patrick Pettersson, Lukas Lundholm, Maria Ljungberg
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0238689

Assessment of transcriptomic constraint-based methods for central carbon flux inference
Cited by: 3
Author(s): Siddharth Bhadra-Lobo, Min Kyung Kim, Desmond S. Lun
Software Mentions: 5
Published: about 4 years ago

10.1016/j.cell.2021.04.039

Microbial exposure during early human development primes fetal immune cells
Cited by: 124
Author(s): A. N. Mishra, Ghee Chuan Lai, Jing Yao Leong, Thet Tun Aung, Noam Shental, Aviva Rotter-Maskowitz, Edwin Shepherdson, Gurmit Singh Naranjan Singh, Rhea Pai, Adhika Shanti, Richard L. Wong, Andrea Lee, Costerwell Khyriem, Charles Antoine Dutertre, Svetoslav Chakarov, Kandhadayar G. Srinivasan, Nurhidaya Binte Shadan, Xiao Meng Zhang, Shabnam Khalilnezhad, Fabien Cottier, Alrina Shin Min Tan, Gillian Low, Phyllis Chen, Yiping Fan, Pei Xiang Hor, Avery Khoo May Lee, Mahesh Choolani, David Vermijlen, Ankur Sharma, Garold Fuks, Ravid Straussman, Norman Pavelka, Benoît Malleret, Naomi McGovern, Salvatore Albani, Jerry Kok Yen Chan, Florent Ginhoux
Software Mentions: 5
Published: over 3 years ago

10.1186/s13059-017-1196-0

The within-host population dynamics of Mycobacterium tuberculosis vary with treatment efficacy
Cited by: 88
Author(s): Andrej Trauner, Qingyun Liu, Laura E. Via, Xin Liu, Xianglin Ruan, Lili Liang, Huimin Shi, Ying Chen, Ziling Wang, Ruixia Liang, Wei Zhang, Wei Wang, Jingcai Gao, Gang Sun, Daniela Brites, Kathleen England, Guolong Zhang, Sébastien Gagneux, Clifton E. Barry, Qian Gao
Software Mentions: 5
Published: over 7 years ago

10.18383/j.tom.2016.00172

Dynamic Susceptibility Contrast-MRI Quantification Software Tool: Development and Evaluation
Cited by: 7
Author(s): Panagiotis Korfiatis, Timothy L. Kline, Zachary S. Kelm, Rickey E. Carter, Leland Hu, Bradley J. Erickson
Software Mentions: 5
Published: almost 8 years ago

10.3390/toxins13090669

Force Mapping Study of Actinoporin Effect in Membranes Presenting Phase Domains
Cited by: 4
Author(s): Katia Cosentino, Edward Hermann, Nicolai von Kügelgen, Joseph D. Unsay, Uris Ros, Ana J. García‐Sáez
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pntd.0009306

The transcriptional landscape of Venezuelan equine encephalitis virus (TC-83) infection
Cited by: 4
Author(s): Zhiyuan Yao, Fabio Zanini, Sathish Kumar, Marwah Karim, Sirle Saul, Nishank Bhalla, Nuttada Panpradist, Avery Muniz, Aarthi Narayanan, Stephen R. Quake, Shirit Einav
Software Mentions: 5
Published: over 3 years ago

10.3390/cancers13184671

Identifying New Potential Biomarkers in Adrenocortical Tumors Based on mRNA Expression Data Using Machine Learning
Cited by: 9
Author(s): André Marquardt, Laura‐Sophie Landwehr, Cristina L. Ronchi, Guido Di Dalmazi, Anna Riester, Philip Kollmannsberger, Barbara Altieri, Martin Fassnacht, Silviu Sbiera
Software Mentions: 5
Published: about 3 years ago

10.3390/genes9110553

Large-Scale Analyses of Site-Specific Evolutionary Rates across Eukaryote Proteomes Reveal Confounding Interactions between Intrinsic Disorder, Secondary Structure, and Functional Domains
Cited by: 10
Author(s): Joseph B. Ahrens, Jordon Rahaman, Jessica Siltberg-Liberles
Software Mentions: 5
Published: about 6 years ago

10.3390/cancers12113199

Regulation of Canonical Oncogenic Signaling Pathways in Cancer via DNA Methylation
Cited by: 13
Author(s): Jennifer Lu, Premila M Wilfred, Darren Korbie, Matt Trau
Software Mentions: 5
Published: about 4 years ago

10.3390/genes12020292

Comparative Mitogenomics in Hyalella (Amphipoda: Crustacea)
Cited by: 5
Author(s): Francesco Zapelloni, José A. Jurado‐Rivera, Damià Jaume, Carlos Juan, Joan Pons
Software Mentions: 5
Published: almost 4 years ago

10.3390/s21093145

An Evaluation of Motion Trackers with Virtual Reality Sensor Technology in Comparison to a Marker-Based Motion Capture System Based on Joint Angles for Ergonomic Risk Assessment
Cited by: 4
Author(s): Jan P. Vox, Anika Weber, Karen Insa Wolf, Krzysztof Izdebski, Thomas Schüler, Peter König, Frank Wallhoff, Daniel Friemert
Software Mentions: 5
Published: over 3 years ago

10.3389/fnsyn.2019.00017

Mechanisms of PTPσ-Mediated Presynaptic Differentiation
Cited by: 28
Author(s): Claire Bomkamp, Nirmala Padmanabhan, Benyamin Karimi, Yuan Ge, Jesse T. Chao, Christopher Loewen, Tabrez J. Siddiqui, Ann Marie Craig
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0242339

Shifts in methanogenic archaea communities and methane dynamics along a subtropical estuarine land use gradient
Cited by: 9
Author(s): Sebastian Euler, Luke C. Jeffrey, Damien T. Maher, Derek Mackenzie, Douglas R. Tait
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0210028

LittleBrain: A gradient-based tool for the topographical interpretation of cerebellar neuroimaging findings
Cited by: 24
Author(s): Xavier Guell, Mathias Goncalves, Jakub Kaczmarzyk, John D. E. Gabrieli, Jeremy D. Schmahmann, Samik Ghosh
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13059-019-1858-1

Evaluating nanopore sequencing data processing pipelines for structural variation identification
Cited by: 30
Author(s): Anbo Zhou, Timothy Lin, Jinchuan Xing
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pcbi.1009346

The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout
Cited by: 48
Author(s): Nicolò Gozzi, Paolo Bajardi, Nicola Perra
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pcbi.1005541

High-order epistasis shapes evolutionary trajectories
Cited by: 88
Author(s): Zachary Sailer, Michael J. Harms
Software Mentions: 5
Published: over 7 years ago

10.1002/brb3.1974

Self‐administered biofeedback treatment app for pediatric migraine: A randomized pilot study
Cited by: 3
Author(s): Anker Stubberud, Mattias Linde, Eiliv Brenner, Martin Heier, Alexander Olsen, Anne Hege Aamodt, Gøril Bruvik Gravdahl, Erling Tronvik
Software Mentions: 5
Published: almost 4 years ago

10.3389/fpsyt.2016.00130

Development and Clinical Evaluation of an mHealth Application for Stress Management
Cited by: 26
Author(s): Brent Winslow, George L. Chadderdon, Sara Dechmerowski, David Jones, Solomon Kalkstein, Jennifer L. Greene, Philip Gehrman
Software Mentions: 5
Published: over 8 years ago

10.3390/s19061361

Smartbins: Using Intelligent Harvest Baskets to Estimate the Stages of Berry Harvesting
Cited by: 5
Author(s): Patricio Galeas, Carlos Muñoz, Juan Ignacio Huircán, Mario Fernández, Luis A. Segura‐Ponce, Cristian Durán-Faúndez
Software Mentions: 5
Published: over 5 years ago

10.3389/fpls.2019.00875

Evaluation of the Phenotypic Repeatability of Canopy Temperature in Wheat Using Continuous-Terrestrial and Airborne Measurements
Cited by: 32
Author(s): David M. Deery, G. J. Rebetzke, J.A.J. Berni, William D. Bovill, Richard A. James, Anthony G. Condon, Robert T. Furbank, Scott C. Chapman, Ronald P. Fischer
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1002628

Hybrid Models and Biological Model Reduction with PyDSTool
Cited by: 71
Author(s): Robert Clewley
Software Mentions: 5
Published: over 12 years ago

10.1186/s12859-021-04122-7

Constructing and analysing dynamic models with modelbase v1.2.3: a software update
Cited by: 7
Author(s): Marvin van Aalst, Oliver Ebenhöh, Anna Matuszyńska
Software Mentions: 5
Published: over 3 years ago

10.1111/evo.13754

The comparative biogeography of Philippine geckos challenges predictions from a paradigm of climate‐driven vicariant diversification across an island archipelago
Cited by: 20
Author(s): Jamie R. Oaks, Cameron D. Siler, Rafe M. Brown
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1004568

Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways
Cited by: 43
Author(s): Sean L. Seyler, Avishek Kumar, M. F. Thorpe, Oliver Beckstein
Software Mentions: 5
Published: about 9 years ago

10.1038/s41598-021-87064-7

Predicting the clinical management of skin lesions using deep learning
Cited by: 16
Author(s): Kumar Abhishek, Jeremy Kawahara, Ghassan Hamarneh
Software Mentions: 5
Published: over 3 years ago

10.1186/s40679-016-0037-7

Data systems for the Linac coherent light source
Cited by: 27
Author(s): J. B. Thayer, D. S. Damiani, C. J. B. Ford, M. M. Dubrovin, I. Gaponenko, C.P. O'Grady, W. Kroeger, J. Pines, Thomas J Lane, A. Salnikov, Dieter K. Schneider, T. Tookey, M. Weaver, Chun Hong Yoon, A. Perazzo
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-021-92826-4

Validating quantitative PCR assays for cfDNA detection without DNA extraction in exercising SLE patients
Cited by: 12
Author(s): Elmo Neuberger, Alexandra Brahmer, Tobias Ehlert, Katrin Kluge, Keito F A Philippi, Simone Boedecker, Julia Weinmann‐Menke, Perikles Simon
Software Mentions: 5
Published: over 3 years ago

10.3390/biomedicines9050537

The Relationship between the Strength Characteristics of Cerebral Aneurysm Walls with Their Status and Laser-Induced Fluorescence Data
Cited by: 2
Author(s): E. O. Tsibulskaya, A. I. Lipovka, А. П. Чупахин, A. V. Dubovoy, D. V. Parshin, N. A. Maslov
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0083506

Widespread Misinterpretable ChIP-seq Bias in Yeast
Cited by: 128
Author(s): Daechan Park, Yaelim Lee, Gurvani Bhupindersingh, Vishwanath R. Iyer
Software Mentions: 5
Published: almost 11 years ago

10.1002/ece3.7299

Flexibility in Red Sea Tridacna maxima‐Symbiodiniaceae associations supports environmental niche adaptation
Cited by: 7
Author(s): Susann Rossbach, Benjamin C. C. Hume, Anny Cárdenas, Gabriela Perna, Christian R. Voolstra, Carlos M. Duarte
Software Mentions: 5
Published: over 3 years ago

10.1186/s12859-019-3004-1

mycelyso – high-throughput analysis of Streptomyces mycelium live cell imaging data
Cited by: 3
Author(s): Christian Carsten Sachs, Joachim Koepff, Wolfgang Wiechert, Alexander Grünberger, Katharina Nöh
Software Mentions: 5
Published: about 5 years ago

10.3389/fnins.2021.650219

A Dissociation of Attention, Executive Function and Reaction to Difficulty: Development of the MindPulse Test, a Novel Digital Neuropsychological Test for Precise Quantification of Perceptual-Motor Decision-Making Processes
Cited by: 2
Author(s): Sandra Suárez, Bertrand Eynard, Sylvie Granon
Software Mentions: 5
Published: over 3 years ago

10.1140/epjds/s13688-021-00270-1

Behaviours and attitudes in response to the COVID-19 pandemic: insights from a cross-national Facebook survey
Cited by: 48
Author(s): Daniela Perrotta, André Grow, Francesco Rampazzo, Jorge Cimentada, Emanuele Del Fava, Sofia Gil‐Clavel, Emilio Zagheni
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2020.531476

Application of MRI Radiomics-Based Machine Learning Model to Improve Contralateral BI-RADS 4 Lesion Assessment
Cited by: 11
Author(s): Hao Wen, Jing Gong, Shengping Wang, Hui Zhu, Bin Zhao, Weijun Peng
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-020-77364-9

A potential energy and mutual information based link prediction approach for bipartite networks
Cited by: 7
Author(s): Purushottam Kumar, Dolly Sharma
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12859-018-2092-7

An interpretable framework for clustering single-cell RNA-Seq datasets
Cited by: 46
Author(s): Jesse M. Zhang, Jue Fan, H. Christina Fan, David Rosenfeld, David Tse
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pcbi.1008889

Building blocks and blueprints for bacterial autolysins
Cited by: 9
Author(s): Spencer J. Mitchell, Deeptak Verma, Karl E. Griswold, Chris Bailey‐Kellogg
Software Mentions: 5
Published: over 3 years ago

10.3389/fninf.2018.00089

BindsNET: A Machine Learning-Oriented Spiking Neural Networks Library in Python
Cited by: 159
Author(s): Hananel Hazan, Daniel J. Saunders, Hassaan F. Khan, Devdhar Patel, Darpan T. Sanghavi, Hava T. Siegelmann, Róbert Kozma
Software Mentions: 5
Published: almost 6 years ago

10.15252/embj.2020107245

Desensitisation of Notch signalling through dynamic adaptation in the nucleus
Cited by: 13
Author(s): Ranjith Viswanathan, Jonas Hartmann, Cristina Pallares Cartes, Stefano De Renzis
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pbio.3000877

High-throughput mapping of the phage resistance landscape in E. coli
Cited by: 82
Author(s): Vivek K. Mutalik, Benjamin A. Adler, Harneet S. Rishi, Denish Piya, Crystal Zhong, Britt Koskella, Elizabeth Kutter, Richard Calendar, Pavel S. Novichkov, Morgan N. Price, Adam M. Deutschbauer, Adam P. Arkin
Software Mentions: 5
Published: about 4 years ago

10.3390/diagnostics11081361

GIST and Ghrelin: To Be or Not to Be?
Cited by: 2
Author(s): Iuliana Spiridon, Delia Ciobanu, Simona Eliza Giușcă, Dan Ferariu, I Pleşcă, Irina Draga Căruntu
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-019-45995-2

Temporal Stability of the Ruminal Bacterial Communities in Beef Steers
Cited by: 27
Author(s): Brooke A. Clemmons, Cameron Martino, Liesel G Schneider, Josh Lefler, Mallory Embree, Phillip R. Myer
Software Mentions: 5
Published: over 5 years ago

10.3389/fninf.2014.00055

NeuronDepot: keeping your colleagues in sync by combining modern cloud storage services, the local file system, and simple web applications
Cited by: 3
Author(s): Philipp L. Rautenberg, Ajayrama Kumaraswamy, Álvaro Tejero-Cantero, Christoph Doblander, Mohammad Reza Norouzian, Kazuki Kai, Hans‐Arno Jacobsen, Hiroyuki Ai, Thomas Wachtler, Hidetoshi Ikeno
Software Mentions: 5
Published: over 10 years ago

10.1093/bioinformatics/bty409

PyCoTools: a Python toolbox for COPASI
Cited by: 17
Author(s): Ciaran Welsh, Nicola Fullard, Carole J. Proctor, Alvaro Martinez-Guimera, Robert J. Isfort, Charles C. Bascom, Ryan Tasseff, Stefan Przyborski, Daryl P. Shanley
Software Mentions: 5
Published: over 6 years ago

10.1155/2021/5522729

Prediction of COVID-19 with Computed Tomography Images using Hybrid Learning Techniques
Cited by: 13
Author(s): P. Varalakshmi, Vasumathi Narayanan, Sakthi Jaya Sundar Rajasekar
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-020-60366-y

Engineering Meteorological Features to Select Stress Tolerant Hybrids in Maize
Cited by: 6
Author(s): Gordan Mimić, Sanja Brdar, M. Brkic, Marko Panić, Oskar Marko, Vladimir Crnojević
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0222523

The feasibility of using citizens to segment anatomy from medical images: Accuracy and motivation
Cited by: 2
Author(s): Judith R. Meakin, Ryan M. Ames, Jonathan C. G. Jeynes, Joanne R. Welsman, Michael Gundry, Karen Knapp, Richard Everson
Software Mentions: 5
Published: about 5 years ago

10.1186/s40064-016-2573-y

Computing symmetrical strength of N-grams: a two pass filtering approach in automatic classification of text documents
Cited by: 10
Author(s): Deepak Agnihotri, Kesari Verma, Priyanka Tripathi
Software Mentions: 5
Published: over 8 years ago

10.3389/fninf.2013.00043

Neural system prediction and identification challenge
Cited by: 3
Author(s): Ioannis Vlachos, Yury V. Zaytsev, Sebastian Spreizer, Ad Aertsen, Arvind Kumar
Software Mentions: 4
Published: almost 12 years ago

10.7717/peerj-cs.165

Tools4MSP: an open source software package to support Maritime Spatial Planning
Cited by: 17
Author(s): Stefano Menegon, Alessandro Sarretta, Daniel Depellegrin, Giulio Farella, Chiara Venier, Andrea Barbanti
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-33900-2

Using volunteered observations to map human exposure to ticks
Cited by: 23
Author(s): Irene Garcia‐Martí, R. Zurita-Milla, Margriet Harms, Arno Swart
Software Mentions: 4
Published: about 6 years ago

10.1186/s12918-018-0534-5

Regulation of dual specificity phosphatases in breast cancer during initial treatment with Herceptin: a Boolean model analysis
Cited by: 7
Author(s): Petronela Buiga, Ari Elson, Lydia Tabernero, Jean-Marc Schwartz
Software Mentions: 4
Published: over 6 years ago

10.1186/s12859-020-3495-9

YSMR: a video tracking and analysis program for bacterial motility
Cited by: 3
Author(s): Julian Schwanbeck, Ines Oehmig, Jerôme Dretzke, Andreas E. Zautner, Uwe Groß, Wolfgang Bohne
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-017-12730-8

Doping colloidal bcc crystals — interstitial solids and meta-stable clusters
Cited by: 8
Author(s): Ruben Higler, Joris Sprakel
Software Mentions: 4
Published: about 7 years ago

10.1007/s00294-020-01096-6

Comparing the utility of in vivo transposon mutagenesis approaches in yeast species to infer gene essentiality
Cited by: 11
Author(s): Anton Levitan, Andrew N. Gale, Emma Dallon, Darby W. Kozan, Kyle W. Cunningham, Roded Sharan, Judith Berman
Software Mentions: 4
Published: over 4 years ago

10.7717/peerj.8417

16S rRNA metagenomic analysis of the bacterial community associated with turf grass seeds from low moisture and high moisture climates
Cited by: 17
Author(s): Qiang Chen, William A. Meyer, Qiuwei Zhang, James F. White
Software Mentions: 4
Published: almost 5 years ago

10.7717/peerj.7608

The effect of reverse transcription enzymes and conditions on high throughput amplicon sequencing of the 16S rRNA
Cited by: 2
Author(s): Adam Šťovíček, Smadar Cohen-Chalamish, Osnat Gillor
Software Mentions: 4
Published: about 5 years ago

10.3389/fninf.2014.00016

Stimfit: quantifying electrophysiological data with Python
Cited by: 118
Author(s): Segundo J. Guzman, Alois Schlögl, Christoph Schmidt-Hieber
Software Mentions: 4
Published: almost 11 years ago

10.1038/srep36493

Big genomics and clinical data analytics strategies for precision cancer prognosis
Cited by: 18
Author(s): Ghim Siong Ow, Vladimir A. Kuznetsov
Software Mentions: 4
Published: about 8 years ago

10.1186/1756-0500-7-533

FASTQSim: platform-independent data characterization and in silico read generation for NGS datasets
Cited by: 35
Author(s): Anna Shcherbina
Software Mentions: 4
Published: almost 11 years ago

10.7717/peerj.10558

HiCEnterprise: identifying long range chromosomal contacts in Hi-C data
Cited by: 1
Author(s): Hanna Kranas, Irina Tuszyńska, Bartek Wilczyński
Software Mentions: 4
Published: over 3 years ago

10.3390/pathogens10050555

Microeukaryotic Communities on the Fruit of Gardenia thunbergia Thunb. with a Focus on Pathogenic Fungi
Cited by: 0
Author(s): Bastian Steudel, Himansu Baijnath, Thorben Schwedt, Armin O. Schmitt
Software Mentions: 4
Published: over 3 years ago

10.1016/j.dib.2016.06.049

Data on the verification and validation of segmentation and registration methods for diffusion MRI
Cited by: 1
Author(s): Oscar Estéban, Dominique Zosso, Alessandro Daducci, M. Bach Cuadra, María J. Ledesma-Carbayo, Jean‐Philippe Thiran, A. Santos
Software Mentions: 4
Published: about 8 years ago

10.1016/j.dib.2017.10.038

Programs for the calculation of the spinodal decomposition growth rate and the spinodal gap in nanoparticles
Cited by: 0
Author(s): Evgeny Pogorelov, Julia Kundin
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41597-020-00769-8

An open-source, end-to-end workflow for multidimensional photoemission spectroscopy
Cited by: 16
Author(s): R. Patrick Xian, Yves Acremann, Steinn Ymir Agustsson, Maciej Dendzik, Kevin Bühlmann, Davide Curcio, Dmytro Kutnyakhov, Frederico Pressacco, Michael Heber, Shuo Dong, Tommaso Pincelli, Jure Demšar, W. Würth, Philip Hofmann, Martin Wolf, Markus Scheidgen, Laurenz Rettig, Ralph Ernstorfer
Software Mentions: 4
Published: almost 4 years ago

10.1186/1471-2229-11-131

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.)
Cited by: 101
Author(s): Grit Haseneyer, Thomas Schmutzer, Michael Seidel, Ruonan Zhou, Martin Mascher, C. C. Schön, Stefan Taudien, Uwe Scholz, Nils Stein, Klaus Mayer, Eva Bauer
Software Mentions: 4
Published: about 13 years ago

10.1098/rsos.160451

Strain differences in the collective behaviour of zebrafish (Danio rerio) in heterogeneous environment
Cited by: 44
Author(s): Axel Séguret, Bertrand Collignon, José Halloy
Software Mentions: 4
Published: about 8 years ago

10.1186/1471-2431-13-152

The swiss neonatal quality cycle, a monitor for clinical performance and tool for quality improvement
Cited by: 6
Author(s): Mark Adams, Tjade Claus Hoehre, Hans Ulrich Bucher
Software Mentions: 4
Published: about 11 years ago

10.1186/s12859-017-1751-4

Quantiprot - a Python package for quantitative analysis of protein sequences
Cited by: 8
Author(s): Bogumił M. Konopka, Marta Anna Marciniak, Witold Dyrka
Software Mentions: 4
Published: over 7 years ago

10.1186/s12985-020-01394-y

Characterization of integrated prophages within diverse species of clinical nontuberculous mycobacteria
Cited by: 21
Author(s): Cody Glickman, Sara M. Kammlade, Nabeeh A. Hasan, L. Elaine Epperson, Rebecca M. Davidson, Michael Strong
Software Mentions: 4
Published: over 4 years ago

10.1038/sdata.2018.55

Massively parallel recordings in macaque motor cortex during an instructed delayed reach-to-grasp task
Cited by: 41
Author(s): Thomas Brochier, Lyuba Zehl, Yaoyao Hao, Margaux Duret, Julia Sprenger, Michael Denker, Sonja Grün, Alexa Riehle
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2202-13-S1-P13

A high-level, simulator independent, Python library for simulating small networks of multicompartmental neurons
Cited by: 0
Author(s): Michael Hull, David Willshaw
Software Mentions: 4
Published: over 12 years ago

10.3389/fmolb.2021.617176

BIO-GATS: A Tool for Automated GPCR Template Selection Through a Biophysical Approach for Homology Modeling
Cited by: 3
Author(s): Amara Jabeen, Ramya Vijayram, Shoba Ranganathan
Software Mentions: 4
Published: over 3 years ago

Projects: pypi: matplotlib

Papers Mentioning matplotlib 1,045