pypi: matplotlib | Projects | Ecosyste.ms: Papers

10.1038/s41597-019-0261-9

A 2D hyperspectral library of mineral reflectance, from 900 to 2500 nm
Cited by: 7
Author(s): Laurent Fasnacht, Marie-Louise Vogt, Philippe Renard, Philip Brunner
Software Mentions: 6
Published: over 4 years ago

10.3389/fncom.2014.00139

Diffusion approximation-based simulation of stochastic ion channels: which method to use?
Cited by: 8
Author(s): Danilo Pezo, Daniel Soudry, Patricio Orio
Software Mentions: 6
Published: over 9 years ago

10.3389/fncom.2018.00083

Task-Related Synaptic Changes Localized to Small Neuronal Population in Recurrent Neural Network Cortical Models
Cited by: 6
Author(s): Satoshi Kuroki, Takuya Isomura
Software Mentions: 6
Published: over 5 years ago

10.1016/j.jbc.2021.100804

Droplet and fibril formation of the functional amyloid Orb2
Cited by: 8
Author(s): Kidist Ashami, Alexander S. Falk, Connor Hurd, Samridhi Garg, Silvia A. Cervantes, Anoop Rawat, Ansgar B. Siemer
Software Mentions: 6
Published: almost 3 years ago

10.1186/s13321-016-0180-0

Mapping the 3D structures of small molecule binding sites
Cited by: 13
Author(s): Joshua Meyers, Nathan Brown, Julian Blagg
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0255139

De novo sequencing and analysis of the transcriptome of two highbush blueberry (Vaccinium corymbosum L.) cultivars ‘Bluecrop’ and ‘Legacy’ at harvest and following post-harvest storage
Cited by: 2
Author(s): María Cárcamo de la Concepción, Daniel J. Sargent, Nada Šurbanovski, Richard Colgan, Marco Moretto
Software Mentions: 6
Published: almost 3 years ago

10.1001/jamanetworkopen.2021.8075

Assessment of Overuse of Medical Tests and Treatments at US Hospitals Using Medicare Claims
Cited by: 21
Author(s): Kelsey Chalmers, Philip E. Smith, Judith A. Garber, Valérie Gopinath, Shannon Brownlee, Allen D. Schwartz, Adam G Elshaug, Vikas Saini
Software Mentions: 6
Published: about 3 years ago

10.1186/s12920-016-0164-y

Integrative analyses of proteomics and RNA transcriptomics implicate mitochondrial processes, protein folding pathways and GWAS loci in Parkinson disease
Cited by: 84
Author(s): Alexandra Dumitriu, Javad Golji, Adam Labadorf, Benbo Gao, Thomas G. Beach, Richard H. Myers, Kenneth A. Longo, Jeanne C. Latourelle
Software Mentions: 6
Published: over 8 years ago

10.3389/fgene.2021.674783

Gene Loss, Pseudogenization in Plastomes of Genus Allium (Amaryllidaceae), and Putative Selection for Adaptation to Environmental Conditions
Cited by: 8
Author(s): Victoria A. Scobeyeva, Ilya V. Artyushin, A.A. Krinitsina, Nikitin Pavel, Antipin Mi, Sergei V. Kuptsov, Maxim S. Belenikin, Denis O. Omelchenko, Maria D. Logacheva, Е. А. Коноров, Andrei E. Samoilov, Anna S. Speranskaya
Software Mentions: 6
Published: almost 3 years ago

10.1186/s12920-019-0581-9

The caudate nucleus undergoes dramatic and unique transcriptional changes in human prodromal Huntington’s disease brain
Cited by: 26
Author(s): Filisia Agus, Diego Crespo, Richard H. Myers, Adam Labadorf
Software Mentions: 6
Published: over 4 years ago

10.3389/fcell.2021.562908

FOntCell: Fusion of Ontologies of Cells
Cited by: 0
Author(s): Javier Cabau-Laporta, Alex M. Ascensión, Mikel Arrospide-Elgarresta, Daniela Gerovska, Marcos J. Araúzo‐Bravo
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-020-63036-1

Hierarchical clustering of MS/MS spectra from the firefly metabolome identifies new lucibufagin compounds
Cited by: 12
Author(s): C. J. Rawlinson, Darcy A. B. Jones, S. Rakshit, Shiv Meka, Caroline S. Moffat, Paula Moolhuijzen
Software Mentions: 6
Published: about 4 years ago

10.1074/mcp.O117.068122

Prediction of Protein Complexes in Trypanosoma brucei by Protein Correlation Profiling Mass Spectrometry and Machine Learning
Cited by: 23
Author(s): Thomas W. M. Crozier, Michele Tinti, Mark Larance, Angus I. Lamond, Michael A. J. Ferguson
Software Mentions: 6
Published: over 6 years ago

10.1523/ENEURO.0192-20.2020

Electrophysiological Frequency Band Ratio Measures Conflate Periodic and Aperiodic Neural Activity
Cited by: 77
Author(s): Thomas Donoghue, Julio Dominguez, Bradley Voytek
Software Mentions: 6
Published: over 3 years ago

10.3390/nu11061278

Estimation of Olfactory Sensitivity Using a Bayesian Adaptive Method
Cited by: 14
Author(s): Richard Höchenberger, Kathrin Ohla
Software Mentions: 6
Published: almost 5 years ago

10.12688/f1000research.11905.2

Virtual-screening workflow tutorials and prospective results from the Teach-Discover-Treat competition 2014 against malaria
Cited by: 5
Author(s): Sereina Riniker, Gregory A. Landrum, Floriane Montanari, Santiago D. Villalba, Julie Maier, Johanna M. Jansen, W. Patrick Walters, Anang A. Shelat
Software Mentions: 6
Published: about 6 years ago

10.1093/molbev/msz214

The Genetic Background Modulates the Evolution of Fluoroquinolone-Resistance in Mycobacterium tuberculosis
Cited by: 29
Author(s): Rhastin A D Castro, Amanda Ross, Lujeko Kamwela, Miriam Reinhard, Chloé Loiseau, Julia Feldmann, Sònia Borrell, Andrej Trauner, Sébastien Gagneux
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0226501

pyKNEEr: An image analysis workflow for open and reproducible research on femoral knee cartilage
Cited by: 11
Author(s): Serena Bonaretti, Garry E. Gold, Gary S. Beaupré
Software Mentions: 6
Published: over 4 years ago

10.3390/microorganisms8101554

HybridMine: A Pipeline for Allele Inheritance and Gene Copy Number Prediction in Hybrid Genomes and Its Application to Industrial Yeasts
Cited by: 6
Author(s): Soukaina Timouma, Jean-Marc Schwartz, Daniela Delneri
Software Mentions: 6
Published: over 3 years ago

10.3390/ijms21010269

Genome-Wide Identification and Characterization of the Mitochondrial Transcription Termination Factors (mTERFs) in Capsicum annuum L.
Cited by: 20
Author(s): Bi‐Yu Tang, Lingling Xie, Tao Yi, Junheng Lv, Huiping Yang, Xiang Cheng, Feng Liu, Xuexiao Zou
Software Mentions: 6
Published: over 4 years ago

10.2196/20840

Use of Patient-Reported Symptoms from an Online Symptom Tracking Tool for Dementia Severity Staging: Development and Validation of a Machine Learning Approach
Cited by: 8
Author(s): Aaqib Shehzad, Kenneth Rockwood, Justin Stanley, Taylor Dunn, Susan E. Howlett
Software Mentions: 6
Published: over 3 years ago

10.1186/s13059-020-02099-9

Contiguous and stochastic CHH methylation patterns of plant DRM2 and CMT2 revealed by single-read methylome analysis
Cited by: 11
Author(s): Keith D. Harris, Assaf Zemach
Software Mentions: 6
Published: almost 4 years ago

10.1186/s13072-021-00411-w

Sensitivity of cohesin–chromatin association to high-salt treatment corroborates non-topological mode of loop extrusion
Cited by: 4
Author(s): Arkadiy K. Golov, Anastasia V. Golova, А. В. Гаврилов, Sergey V. Razin
Software Mentions: 6
Published: almost 3 years ago

10.7554/eLife.55325

Parallel CRISPR-Cas9 screens clarify impacts of p53 on screen performance
Cited by: 32
Author(s): A. Bowden, David A Morales-Juarez, Matylda Sczaniecka-Clift, Maria Martin Agudo, Natalia Lukashchuk, John Christopher Thomas, Stephen Jackson
Software Mentions: 6
Published: almost 4 years ago

10.7554/eLife.48063

Initiation of chromosome replication controls both division and replication cycles in E. coli through a double-adder mechanism
Cited by: 44
Author(s): Guillaume Witz, Erik van Nimwegen, Thomas Julou
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0113838

The Connectome Visualization Utility: Software for Visualization of Human Brain Networks
Cited by: 29
Author(s): Roan A. LaPlante, Linda Douw, Wei Tang, Steven M. Stufflebeam
Software Mentions: 6
Published: over 9 years ago

10.1093/genetics/iyab014

Split-wrmScarlet and split-sfGFP: tools for faster, easier fluorescent labeling of endogenous proteins in Caenorhabditis elegans
Cited by: 13
Author(s): Jérôme Goudeau, Catherine S. Sharp, Jonathan S. Paw, Laura Savy, Manuel D. Leonetti, Andrew G. York, Dustin L. Updike, Cynthia Kenyon, Maria Ingaramo
Software Mentions: 6
Published: over 3 years ago

10.1186/s12864-019-5925-5

Transcriptional profiling of spiny lobster metamorphosis reveals three new additions to the nuclear receptor superfamily
Cited by: 8
Author(s): Cameron J. Hyde, Quinn P. Fitzgibbon, Abigail Elizur, Gregory G. Smith, Tomer Ventura
Software Mentions: 6
Published: almost 5 years ago

10.7554/eLife.67176

The solubility product extends the buffering concept to heterotypic biomolecular condensates
Cited by: 19
Author(s): Aniruddha Chattaraj, Michael L. Blinov, Leslie M. Loew
Software Mentions: 6
Published: almost 3 years ago

10.3390/genes12071067

Total Genotype Score Modelling of Polygenic Endurance-Power Profiles in Lithuanian Elite Athletes
Cited by: 6
Author(s): Erinija Pranckevičienė, Valentina Ginevičienė, Audronė Jakaitienė, Laimonas Januska, Algirdas Utkus
Software Mentions: 6
Published: almost 3 years ago

10.7554/eLife.51085

CytoCensus, mapping cell identity and division in tissues and organs using machine learning
Cited by: 12
Author(s): Martin Hailstone, Dominic Waithe, Tamsin J Samuels, Yang Lu, Ita Costello, Yoav Arava, Elizabeth J. Robertson, Richard M. Parton, Ilan Davis
Software Mentions: 6
Published: about 4 years ago

10.3390/md17020081

Predicting Blood–Brain Barrier Permeability of Marine-Derived Kinase Inhibitors Using Ensemble Classifiers Reveals Potential Hits for Neurodegenerative Disorders
Cited by: 28
Author(s): Fabien Plisson, Andrew M. Piggott
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0257535

Recalibrating expectations about effect size: A multi-method survey of effect sizes in the ABCD study
Cited by: 60
Author(s): Max M. Owens, Alexandra Potter, Courtland S. Hyatt, Matthew D. Albaugh, Wesley K. Thompson, Terry L. Jernigan, Dekang Yuan, Sage Hahn, Nicholas Allgaier, Hugh Garavan
Software Mentions: 6
Published: over 2 years ago

10.1186/s12864-020-6481-8

Fluorescent amplification for next generation sequencing (FA-NGS) library preparation
Cited by: 5
Author(s): Jennifer Chiniquy, Megan E. Garber, Aindrila Mukhopadhyay, Nathan J. Hillson
Software Mentions: 6
Published: over 4 years ago

10.2196/18763

A Social Media–Promoted Educational Community of Joint Replacement Patients Using the WeChat App: Survey Study
Cited by: 10
Author(s): Xianzuo Zhang, Xiaoxuan Chen, Nikolaos Kourkoumelis, Ran Gao, Guoyuan Li, Chen Zhu
Software Mentions: 6
Published: about 3 years ago

10.1186/s12864-019-5946-0

Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions
Cited by: 19
Author(s): Jules Deforges, Rodrigo S. Reis, Philippe Jacquet, Dominique Jacques Vuarambon, Yves Poirier
Software Mentions: 6
Published: almost 5 years ago

10.3389/fpsyt.2021.643609

Comorbid Chronic Pain and Depression: Shared Risk Factors and Differential Antidepressant Effectiveness
Cited by: 40
Author(s): William H. Roughan, Adrián I. Campos, Luis M. García-Marín, Gabriel Cuéllar-Partida, Michelle K. Lupton, Ian B. Hickie, Sarah E. Medland, Naomi R. Wray, Enda M. Byrne, Trung Thanh Ngo, Nicholas G. Martin, Miguel E. Rentería
Software Mentions: 6
Published: about 3 years ago

10.1007/s00429-020-02046-1

CBPtools: a Python package for regional connectivity-based parcellation
Cited by: 9
Author(s): Niels Reuter, Sarah Genon, Shahrzad Kharabian Masouleh, Felix Hoffstaedter, Xiaojin Liu, Tobias Kalenscher, Simon B. Eickhoff, Kaustubh R. Patil
Software Mentions: 6
Published: about 4 years ago

10.3390/brainsci10110851

Functional and Structural Connectome Features for Machine Learning Chemo-Brain Prediction in Women Treated for Breast Cancer with Chemotherapy
Cited by: 4
Author(s): Vincent Chin‐Hung Chen, Tung-Yeh Lin, Dah-Cherng Yeh, Jyh‐Wen Chai, Jun‐Cheng Weng
Software Mentions: 6
Published: over 3 years ago

10.1128/mSystems.00016-19

A Novel Sparse Compositional Technique Reveals Microbial Perturbations
Cited by: 255
Author(s): Cameron Martino, James T. Morton, Clarisse Marotz, Luke R. Thompson, Anupriya Tripathi, Rob Knight, Karsten Zengler
Software Mentions: 6
Published: about 5 years ago

10.3390/diagnostics11040623

Impact of Chronic Prostatitis on the PI-RADS Score 3: Proposal for the Addition of a Novel Binary Suffix
Cited by: 1
Author(s): Sascha Merat, Theresa Blümlein, Markus Klarhöfer, Dominik Nickel, Gad Singer, Frank G. Zöllner, Stefan O. Schoenberg, Kubik-Huch Ra, Daniel Hausmann, Lukas Hefermehl
Software Mentions: 6
Published: about 3 years ago

10.2196/28265

Correlation of Population SARS-CoV-2 Cycle Threshold Values to Local Disease Dynamics: Exploratory Observational Study
Cited by: 18
Author(s): Chak Foon Tso, Anurag Garikipati, Abigail Green‐Saxena, Qingqing Mao, Ritankar Das
Software Mentions: 6
Published: almost 3 years ago

10.1186/1751-0473-3-10

Flow: Statistics, visualization and informatics for flow cytometry
Cited by: 11
Author(s): Jacob Frelinger, Thomas B. Kepler, Cliburn Chan
Software Mentions: 6
Published: almost 16 years ago

10.1371/journal.pcbi.1008978

scHiCTools: A computational toolbox for analyzing single-cell Hi-C data
Cited by: 9
Author(s): Xinjun Li, Fan Feng, Hongxi Pu, Wai Yan Leung, Jie Liu
Software Mentions: 6
Published: about 3 years ago

10.3389/fpls.2019.01791

iRSVPred: A Web Server for Artificial Intelligence Based Prediction of Major Basmati Paddy Seed Varieties
Cited by: 7
Author(s): Arun Sharma, D. Satish, Sushmita Sharma, Dinesh Gupta
Software Mentions: 6
Published: about 4 years ago

10.1186/s13029-015-0042-6

PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols
Cited by: 3
Author(s): Alexandros Kanterakis, Joël Kuiper, George Potamias, Morris A. Swertz
Software Mentions: 6
Published: over 8 years ago

10.3390/s20092546

Mind Wandering in a Multimodal Reading Setting: Behavior Analysis & Automatic Detection Using Eye-Tracking and an EDA Sensor
Cited by: 19
Author(s): Iuliia Brishtel, Anam Ahmad Khan, Thomas Schmidt, Tilman Dingler, Shoya Ishimaru, Andreas Dengel
Software Mentions: 6
Published: about 4 years ago

10.3390/s20226486

A Benchmark of Data Stream Classification for Human Activity Recognition on Connected Objects
Cited by: 9
Author(s): Martin Khannouz, Tristan Glatard
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pcbi.1007553

Scalable phylogenetic profiling using MinHash uncovers likely eukaryotic sexual reproduction genes
Cited by: 18
Author(s): David Moi, Laurent Kilchoer, Pablo S. Aguilar, Christophe Dessimoz
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0235159

Zooplankton biogeographic boundaries in the California Current System as determined from metabarcoding
Cited by: 13
Author(s): Kathleen J. Pitz, Jinchen Guo, Shannon B. Johnson, Tracy L. Campbell, Haibin Zhang, Robert C. Vrijenhoek, Francisco P. Chávez, Jonathan B. Geller
Software Mentions: 6
Published: almost 4 years ago

10.1534/g3.114.016196

A Multipurpose, High-Throughput Single-Nucleotide Polymorphism Chip for the Dengue and Yellow Fever Mosquito, Aedes aegypti
Cited by: 53
Author(s): Benjamin R. Evans, Andrea Gloria‐Soria, Lin Hou, Carolyn S. McBride, Mariangela Bonizzoni, Hongyu Zhao, Jeffrey R. Powell
Software Mentions: 6
Published: about 9 years ago

10.3390/cells10020235

A Multimodal Platform for Simultaneous T-cell Imaging, Defined Activation, and Mechanobiological Characterization
Cited by: 4
Author(s): Martin Fölser, Viktoria Motsch, René Platzer, Johannes B. Huppa, Gerhard J. Schütz
Software Mentions: 6
Published: over 3 years ago

10.3390/s21062039

Detecting Anomalous Transactions via an IoT Based Application: A Machine Learning Approach for Horse Racing Betting
Cited by: 2
Author(s): Moohong Min, Jemin Justin Lee, Hyunbeom Park, Kyung-Ho Lee
Software Mentions: 6
Published: about 3 years ago

10.1016/j.str.2015.12.011

The Role of the Membrane in the Structure and Biophysical Robustness of the Dengue Virion Envelope
Cited by: 79
Author(s): Tyler Reddy, Mark S. P. Sansom
Software Mentions: 6
Published: about 8 years ago

10.3389/fninf.2014.00022

SCoT: a Python toolbox for EEG source connectivity
Cited by: 21
Author(s): Martin Billinger, Clemens Brunner, Gernot Müller-Putz
Software Mentions: 6
Published: about 10 years ago

10.1038/s41598-021-90335-y

Whole brain functional recordings at cellular resolution in zebrafish larvae with 3D scanning multiphoton microscopy
Cited by: 15
Author(s): Matteo Bruzzone, Enrico Chiarello, Marco Albanesi, Maria Elena Miletto Petrazzini, Aram Megighian, Claudia Lodovichi, Marco Dal Maschio
Software Mentions: 6
Published: almost 3 years ago

10.1371/journal.pone.0240802

OrganoidTracker: Efficient cell tracking using machine learning and manual error correction
Cited by: 32
Author(s): Rutger Nico Ulbe Kok, Laetitia Hebert, Guizela Huelsz-Prince, Yvonne J. Goos, Xuan Zheng, Katarzyna Bożek, Greg J. Stephens, Sander J. Tans, Jeroen S. van Zon
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pcbi.1005950

HaSAPPy: A tool for candidate identification in pooled forward genetic screens of haploid mammalian cells
Cited by: 9
Author(s): Giulio Di Minin, Andreas Postlmayr, Anton Wutz
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-94105-8

Sublinear domination and core–periphery networks
Cited by: 1
Author(s): Marios Papachristou
Software Mentions: 6
Published: almost 3 years ago

10.3390/s18020539

A COTS-Based Portable System to Conduct Accurate Substance Concentration Measurements
Cited by: 9
Author(s): Juan Aznar-Poveda, José Antonio López-Pastor, Toribio F. Otero
Software Mentions: 6
Published: over 6 years ago

10.1186/s13148-021-01029-1

Clinical evaluation of Bladder CARE, a new epigenetic test for bladder cancer detection in urine samples
Cited by: 12
Author(s): Paolo Piatti, Yap Ching Chew, Michiko Suwoto, Taikun Yamada, Benjamin Jara, Xiaoteng Jia, Wei Guo, Saum Ghodoussipour, Siamak Daneshmand, Hamed Ahmadi, Jeffrey M. Rice, Jeffrey M. Bhasin, Faith Holloway, Yvonne Tsai, Yoshitomo Chihara, Gangning Liang
Software Mentions: 6
Published: about 3 years ago

10.1186/1745-6150-6-51

Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data
Cited by: 12
Author(s): Iros Barozzi, Alberto Termanini, Saverio Minucci, Gioacchino Natoli
Software Mentions: 6
Published: over 13 years ago

10.1186/1471-2105-13-115

PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools
Cited by: 60
Author(s): Sean O’Callaghan, David P. De Souza, Andrew P. Isaac, Qiao Wang, Luke Hodkinson, Moshe Olshansky, Tim Erwin, Bill Appelbe, Dedreia Tull, Ute Roessner, Antony Bacic, Malcolm J. McConville, Vladimir A Likić
Software Mentions: 6
Published: almost 12 years ago

10.1038/s42003-021-02181-3

Multiparametric biophysical profiling of red blood cells in malaria infection
Cited by: 9
Author(s): Shreya Deshmukh, Bikash Shakya, Anna Chen, Naside Gözde Durmus, Bryan Greenhouse, Elizabeth S. Egan, Utkan Demirci
Software Mentions: 6
Published: almost 3 years ago

10.3389/fninf.2013.00044

An automated and reproducible workflow for running and analyzing neural simulations using Lancet and IPython Notebook
Cited by: 19
Author(s): Jean-Luc Stevens, Marco Elver, James A. Bednar
Software Mentions: 6
Published: over 11 years ago

10.1038/s41598-020-78101-y

Meta-analysis of viscosity of aqueous deep eutectic solvents and their components
Cited by: 26
Author(s): Gudrun Gygli, Xinmeng Xu, Jürgen Pleiss
Software Mentions: 6
Published: over 3 years ago

10.3390/genes9080392

RNA Structure Elements Conserved between Mouse and 59 Other Vertebrates
Cited by: 16
Author(s): Bernhard C. Thiel, Roman Ochsenreiter, Veerendra P. Gadekar, Andrea Tanzer, Ivo L. Hofacker
Software Mentions: 6
Published: almost 6 years ago

10.3389/fninf.2017.00021

Reproducible Large-Scale Neuroimaging Studies with the OpenMOLE Workflow Management System
Cited by: 8
Author(s): Jonathan Passerat–Palmbach, Romain Reuillon, Mathieu Leclaire, Antonios Makropoulos, Emma C. Robinson, Sarah Parisot, Daniel Rueckert
Software Mentions: 6
Published: about 7 years ago

10.1098/rstb.2017.0380

Geppetto: a reusable modular open platform for exploring neuroscience data and models
Cited by: 23
Author(s): Matteo Carandini, Bóris Marin, Adrián Quintana, Matt Earnshaw, Robert Court, Padraig Gleeson, Salvador Durá-Bernal, R. Angus Silver, Giovanni Idili
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-020-70259-9

liputils: a Python module to manage individual fatty acid moieties from complex lipids
Cited by: 3
Author(s): Stefano Manzini, M. Busnelli, A Colombo, Mostafa Kiamehr, Giulia Chiesa
Software Mentions: 6
Published: almost 4 years ago

10.3390/ijerph18094543

A Study of the Effects of the COVID-19 Pandemic on the Experience of Back Pain Reported on Twitter® in the United States: A Natural Language Processing Approach
Cited by: 13
Author(s): Krzysztof Fiok, Waldemar Karwowski, Edgar Gutiérrez, Maham Saeidi, Awad M. Aljuaid, Mohammad Reza Davahli, Redha Taı̈ar, Tadeusz Marek, Ben D. Sawyer
Software Mentions: 6
Published: about 3 years ago

10.1523/ENEURO.0315-18.2018

What, If Anything, Is Rodent Prefrontal Cortex?
Cited by: 271
Author(s): Mark Laubach, Linda M. Amarante, Tom Swanson, Samantha R. White
Software Mentions: 6
Published: over 5 years ago

10.3390/cells9020323

Painting of Fourth and the X-Linked 1.688 Satellite in D. melanogaster Is Involved in Chromosome-Wide Gene Regulation
Cited by: 6
Author(s): Samaneh Ekhteraei-Tousi, Jacob Lewerentz, Jonas Larsson
Software Mentions: 5
Published: over 4 years ago

10.7717/peerj-cs.437

Classification model for accuracy and intrusion detection using machine learning approach
Cited by: 24
Author(s): Arushi Agarwal, Purushottam Sharma, Mohammed Alshehri, Ahmed A. Mohamed, Osama Alfarraj
Software Mentions: 5
Published: about 3 years ago

10.1038/s41598-019-45995-2

Temporal Stability of the Ruminal Bacterial Communities in Beef Steers
Cited by: 27
Author(s): Brooke A. Clemmons, Cameron Martino, Liesel G Schneider, Josh Lefler, Mallory Embree, Phillip R. Myer
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0201469

Patient-specific anatomical model for deep brain stimulation based on 7 Tesla MRI
Cited by: 55
Author(s): Yuval Duchin, Reuben R. Shamir, Rémi Patriat, Jin‐Young Kim, Jerrold L. Vitek, Guillermo Sapiro, Noam Harel
Software Mentions: 5
Published: over 5 years ago

10.3758/s13428-017-0907-5

PyMICE: APython library for analysis of IntelliCage data
Cited by: 5
Author(s): Jakub M. Dzik, Alicja Puścian, Zofia Mijakowska, Kasia Radwańska, Szymon Łȩski
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2018.02680

Germination and Growth Analysis of Streptomyces lividans at the Single-Cell Level Under Varying Medium Compositions
Cited by: 5
Author(s): Joachim Koepff, Christian Carsten Sachs, Wolfgang Wiechert, Dietrich Kohlheyer, Katharina Nöh, Marco Oldiges, Alexander Grünberger
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-39468-9

Flexible updating of dynamic knowledge structures
Cited by: 17
Author(s): Franziska R. Richter, Paul M. Bays, Priyanga Jeyarathnarajah, Jon S. Simons
Software Mentions: 5
Published: about 5 years ago

10.3390/cells9102283

Gut Microbiome Changes in Patients with Active Left-Sided Ulcerative Colitis after Fecal Microbiome Transplantation and Topical 5-aminosalicylic Acid Therapy
Cited by: 34
Author(s): Dagmar Schierová, Jan Březina, Jakub Mrázek, K. Fliegerová, Simona Kvasnová, Lukáš Bajer, Pavel Drastich
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-019-38791-5

Automated behavioural analysis reveals the basic behavioural repertoire of the urochordate Ciona intestinalis
Cited by: 25
Author(s): Jerneja Rudolf, Daniel Dondorp, Louise Canon, Sonia Tieo, Marios Chatzigeorgiou
Software Mentions: 5
Published: about 5 years ago

10.1016/j.cell.2021.04.039

Microbial exposure during early human development primes fetal immune cells
Cited by: 124
Author(s): A. N. Mishra, Ghee Chuan Lai, Jing Yao Leong, Thet Tun Aung, Noam Shental, Aviva Rotter-Maskowitz, Edwin Shepherdson, Gurmit Singh Naranjan Singh, Rhea Pai, Adhika Shanti, Richard L. Wong, Andrea Lee, Costerwell Khyriem, Charles Antoine Dutertre, Svetoslav Chakarov, Kandhadayar G. Srinivasan, Nurhidaya Binte Shadan, Xiao Meng Zhang, Shabnam Khalilnezhad, Fabien Cottier, Alrina Shin Min Tan, Gillian Low, Phyllis Chen, Yiping Fan, Pei Xiang Hor, Avery Khoo May Lee, Mahesh Choolani, David Vermijlen, Ankur Sharma, Garold Fuks, Ravid Straussman, Norman Pavelka, Benoît Malleret, Naomi McGovern, Salvatore Albani, Jerry Kok Yen Chan, Florent Ginhoux
Software Mentions: 5
Published: almost 3 years ago

10.3389/fmicb.2020.603657

Human Papillomavirus Infections in Cervical Samples From HIV-Positive Women: Evaluation of the Presence of the Nonavalent HPV Genotypes and Genetic Diversity
Cited by: 3
Author(s): Catia Sias, Valerio Guarrasi, Claudia Minosse, Daniele Lapa, Franca Del Nonno, Maria Rosaria Capobianchi, Anna Rosa Garbuglia, Paola Del Porto, Paola Paci
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0215054

Numerical simulations for the Toda lattices Hamiltonian system: Higher order symplectic illustrative perspective
Cited by: 1
Author(s): Asif Mushtaq, Amna Noreen, Muhammad Farooq
Software Mentions: 5
Published: about 5 years ago

10.3390/cancers12113199

Regulation of Canonical Oncogenic Signaling Pathways in Cancer via DNA Methylation
Cited by: 13
Author(s): Jennifer Lu, Premila M Wilfred, Darren Korbie, Matt Trau
Software Mentions: 5
Published: over 3 years ago

10.12688/wellcomeopenres.16661.2

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch
Cited by: 120
Author(s): Áine O’Toole, Verity Hill, Oliver G. Pybus, Alexander Watts, Isaac I Bogoch, Kamran Khan, Jane P. Messina, Houriiyah Tegally, Richard Lessells, Jennifer Giandhari, Sureshnee Pillay, Kefentse A. Tumedi, Gape Nyepetsi, Malebogo Kebabonye, Maitshwarelo I. Matsheka, Madisa Mine, Sima Tokajian, Hamad Hassan, Tamara Salloum, Georgi Merhi, Jad Koweyes, Jemma L. Geoghegan, Joep de Ligt, Xiaoyun Ren, Matthew Storey, Nikki E. Freed, Chitra Pattabiraman, Pramada Prasad, Anita Desai, Vasanthapuram Ravi, Thomas F. Schulz, Lars Steinbrück, Tanja Stadler, Antonio Parisi, Angelica Bianco, Darı́o Garcı́a de Viedma, Sergio Buenestado‐Serrano, Vítor Borges, Joana Isidro, Sílvia Duarte, João Paulo Gomes, Neta S. Zuckerman, Michal Mandelboim, Orna Mor, Torsten Seemann, Alicia Arnott, Jenny Draper, Mailie Gall, William D. Rawlinson, Ira W. Deveson, Sanmarié Schlebusch, Jamie McMahon, Lex Leong, Chuan Kok Lim, Maria Chironna, Daniela Loconsole, Antonin Bal, Laurence Josset, Edward C. Holmes, Kirsten St. George, Erica Lasek‐Nesselquist, Reina S. Sikkema, Bas B. Oude Munnink, Marion Koopmans, Mia Brytting, Vannavada Sudha Rani, S. Pavani, Teemu Smura, Albert Heim, Satu Kurkela, Massab Umair, Muhammad Salman, Barbara Bartolini, Martina Rueca, Christian Drosten, Thorsten Wolff, Olin K. Silander, Dirk Eggink, Chantal Reusken, Harry Vennema, Aekyung Park, Christine V. F. Carrington, Nikita Sahadeo, Michael J. Carr, Gabo Gonzalez, Search Alliance San Diego, SeqCOVID-Spain, Túlio de Oliveira, Nuno Rodrigues Faria, Andrew Rambaut, Moritz U. G. Kraemer
Software Mentions: 5
Published: over 2 years ago

10.3390/cancers13184671

Identifying New Potential Biomarkers in Adrenocortical Tumors Based on mRNA Expression Data Using Machine Learning
Cited by: 9
Author(s): André Marquardt, Laura‐Sophie Landwehr, Cristina L. Ronchi, Guido Di Dalmazi, Anna Riester, Philip Kollmannsberger, Barbara Altieri, Martin Fassnacht, Silviu Sbiera
Software Mentions: 5
Published: over 2 years ago

10.1038/s41598-020-60366-y

Engineering Meteorological Features to Select Stress Tolerant Hybrids in Maize
Cited by: 6
Author(s): Gordan Mimić, Sanja Brdar, M. Brkic, Marko Panić, Oskar Marko, Vladimir Crnojević
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0210028

LittleBrain: A gradient-based tool for the topographical interpretation of cerebellar neuroimaging findings
Cited by: 24
Author(s): Xavier Guell, Mathias Goncalves, Jakub Kaczmarzyk, John D. E. Gabrieli, Jeremy D. Schmahmann, Samik Ghosh
Software Mentions: 5
Published: over 5 years ago

10.3390/v12091026

Spatio-Temporal Mutational Profile Appearances of Swedish SARS-CoV-2 during the Early Pandemic
Cited by: 10
Author(s): Jiaxin Ling, Rachel A. Hickman, Jinlin Li, Xi Lu, Johanna F. Lindahl, Åke Lundkvist, Josef D. Järhult
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0242339

Shifts in methanogenic archaea communities and methane dynamics along a subtropical estuarine land use gradient
Cited by: 9
Author(s): Sebastian Euler, Luke C. Jeffrey, Damien T. Maher, Derek Mackenzie, Douglas R. Tait
Software Mentions: 5
Published: over 3 years ago

10.1038/sdata.2018.280

A global dataset of CO2 emissions and ancillary data related to emissions for 343 cities
Cited by: 61
Author(s): Cathy Nangini, Anna Peregon, Philippe Ciais, Ulf Weddige, Felix Vogel, Jun Wang, François Marie Bréon, Simeran Bachra, Yilong Wang, K. R. Gurney, Yoshiki Yamagata, Kyra Appleby, Sara Telahoun, Josep G. Canadell, Arnulf Grübler, Shobhakar Dhakal, Felix Creutzig
Software Mentions: 5
Published: over 5 years ago

10.18699/VJ21.002

Application of alternative de novo motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA2 binding sites
Cited by: 3
Author(s): Anton Vitalievich Tsukanov, Victor G. Levitsky, Т. И. Меркулова
Software Mentions: 5
Published: about 3 years ago

10.1186/s12859-019-3103-z

De novo Nanopore read quality improvement using deep learning
Cited by: 9
Author(s): Nathan LaPierre, Rob Egan, Wei Wang, Zhong Wang
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0083506

Widespread Misinterpretable ChIP-seq Bias in Yeast
Cited by: 128
Author(s): Daechan Park, Yaelim Lee, Gurvani Bhupindersingh, Vishwanath R. Iyer
Software Mentions: 5
Published: over 10 years ago

10.3390/jcm9082603

Prediction of Adverse Events in Stable Non-Variceal Gastrointestinal Bleeding Using Machine Learning
Cited by: 8
Author(s): Dong-Woo Seo, Hahn Yi, Beomhee Park, Youn-Jung Kim, Dong Hwan Jung, Ilsang Woo, Chang Hwan Sohn, Byuk Sung Ko, Namkug Kim, Won Young Kim
Software Mentions: 5
Published: almost 4 years ago

10.3390/jcm10040892

Spinal Cord Morphology in Degenerative Cervical Myelopathy Patients; Assessing Key Morphological Characteristics Using Machine Vision Tools
Cited by: 9
Author(s): Kalum Ost, W. Bradley Jacobs, Nathan Evaniew, Julien Cohen‐Adad, David W. Anderson, David W. Cadotte
Software Mentions: 5
Published: about 3 years ago

10.1002/minf.202100031

ACE2‐Variants Indicate Potential SARS‐CoV‐2‐Susceptibility in Animals: A Molecular Dynamics Study
Cited by: 7
Author(s): Szymon Pach, Trung Ngoc Nguyen, Jakob Trimpert, Dušan Kunec, Nikolaus Osterrieder, Gerhard Wolber
Software Mentions: 5
Published: almost 3 years ago

10.1371/journal.pone.0238689

Assessment of transcriptomic constraint-based methods for central carbon flux inference
Cited by: 3
Author(s): Siddharth Bhadra-Lobo, Min Kyung Kim, Desmond S. Lun
Software Mentions: 5
Published: over 3 years ago

10.3389/fimmu.2018.02059

A Distinct Esophageal mRNA Pattern Identifies Eosinophilic Esophagitis Patients With Food Impactions
Cited by: 8
Author(s): Benjamin F. Sallis, Utkucan Acar, Kelsey Hawthorne, Stephen Babcock, Cynthia Kanagaratham, Jeffrey D. Goldsmith, Rachel Rosen, Jon A. Vanderhoof, Samuel Nurko, Edda Fiebiger
Software Mentions: 5
Published: over 5 years ago

Projects: pypi: matplotlib

Papers Mentioning matplotlib 1,045