Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pbio.3000877

https://doi.org/10.1371/journal.pbio.3000877

High-throughput mapping of the phage resistance landscape in E. coli

Cited by: 82
Author(s): Vivek K. Mutalik, Benjamin A. Adler, Harneet S. Rishi, Denish Piya, Crystal Zhong, Britt Koskella, Elizabeth Kutter, Richard Calendar, Pavel S. Novichkov, Morgan N. Price, Adam M. Deutschbauer, Adam P. Arkin
Published: about 4 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
pypi: BAMQC
Quality control tools for NGS alignment file
Papers that mentioned: 4
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: seaborn
Statistical data visualization
Papers that mentioned: 283