Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: survminer
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/survminer
Drawing Survival Curves using 'ggplot2'
18 versions
Latest release: about 3 years ago
36 dependent packages
46,959 downloads last month
Papers Mentioning survminer 1,473
10.3390/cancers13040917
Novel Gene Signatures Predictive of Patient Recurrence-Free Survival and Castration Resistance in Prostate CancerCited by: 18
Author(s): Jun Ai, Baotong Zhang, Zhiqian Zhang, Hailiang Hu, Jiangtao Dong
Software Mentions: 9
Published: about 3 years ago
10.1371/journal.ppat.1009068
Modeling intra-mosquito dynamics of Zika virus and its dose-dependence confirms the low epidemic potential of Aedes albopictusCited by: 16
Author(s): Sébastian Lequime, Jean-Sébastien Dehecq, Séverine Matheus, Franck de Laval, Lionel Alméras, Sébastien Briolant, Albin Fontaine
Software Mentions: 9
Published: over 3 years ago
10.3389/fmolb.2020.604252
Prognostic Model of Colorectal Cancer Constructed by Eight Immune-Related GenesCited by: 14
Author(s): Shuting Wen, Lina He, Zhuotai Zhong, Hong Mi, Fengbin Liu
Software Mentions: 9
Published: over 3 years ago
10.1186/s12890-021-01588-2
A novel ferroptosis-related genes model for prognosis prediction of lung adenocarcinomaCited by: 9
Author(s): Fēi Li, Dongcen Ge, Shulan Sun
Software Mentions: 9
Published: almost 3 years ago
10.3389/fcell.2021.708066
Integrated Chromatin Accessibility and Transcriptome Landscapes of Doxorubicin-Resistant Breast Cancer CellsCited by: 15
Author(s): Xuelong Wang, Jizhou Yan, Baiyong Shen, Gang Wei
Software Mentions: 9
Published: almost 3 years ago
10.7150/jca.56005
Integrated Genomic and Transcriptomic Analysis reveals key genes for predicting dual-phenotype Hepatocellular Carcinoma PrognosisCited by: 6
Author(s): Yaobang Wang, Xi Wang, Xiaoliang Huang, Jie Zhang, Jinwen Hu, Yinliang Qi, Bang‐De Xiang, Qiuyan Wang
Software Mentions: 9
Published: over 3 years ago
10.1186/s12943-020-01170-0
m6A regulator-mediated methylation modification patterns and tumor microenvironment infiltration characterization in gastric cancerCited by: 600
Author(s): Bo Zhang, Qiong Wu, Ben Li, Defeng Wang, Lei Wang, You Zhou
Software Mentions: 9
Published: about 4 years ago
10.1111/1744-7917.12606
The price of protection: a defensive endosymbiont impairs nymph growth in the bird cherry‐oat aphid, <i>Rhopalosiphum padi</i>Cited by: 30
Author(s): Daniel J. Leybourne, Jorunn I. B. Bos, Tracy A. Valentine, Alison J. Karley
Software Mentions: 9
Published: almost 6 years ago
10.3389/fcell.2021.654504
Role of CXCR4 as a Prognostic Biomarker Associated With the Tumor Immune Microenvironment in Gastric CancerCited by: 5
Author(s): Yuyang Gu, Wenyue Gu, Rongrong Xie, Zhi Chen, Tongpeng Xu, Zhenghua Fei
Software Mentions: 9
Published: over 2 years ago
10.7717/peerj.11687
Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinomaCited by: 5
Author(s): Guangxu Tu, Weilin Peng, Qidong Cai, Zhenyu Zhao, Ping Xiong, Boxue He, Pengfei Zhang, Shuai Shi, Yongguang Tao, Xiang Wang
Software Mentions: 9
Published: almost 3 years ago
10.18632/aging.203290
Expression mode and prognostic value of FXYD family members in colon cancerCited by: 8
Author(s): Ming Jin, Hui Zhang, Jun Yang, Zheng Zhao, Kaitai Liu
Software Mentions: 9
Published: almost 3 years ago
10.3390/cancers12030653
Molecular-Clinical Correlation in Pediatric Medulloblastoma: A Cohort Series Study of 52 Cases in TaiwanCited by: 6
Author(s): Kuo Sheng Wu, Donald Ming Tak Ho, Shiann-Tarng Jou, Alice L. Yu, Huy Tran, Muh Lii Liang, Hsin Hung Chen, Yi Yen Lee, Yi Wei Chen, Shih Chieh Lin, Feng Chi Chang, Meng‐Li Tsai, Yen‐Lin Liu, Hsin Lun Lee, Kevin Hsieh, Wen Chang Huang, Shian Ying Sung, Che-Chang Chang, Chun A. Changou, Kung‐Hao Liang, Tsung Han Hsieh, Yun Ru Liu, Meng En Chao, Chonghua Wan, Shing Shung Chu, Er Chieh Cho, Tai-Tong Wong
Software Mentions: 9
Published: about 4 years ago
10.1002/cam4.4203
Comprehensive analysis of pan‐cancer reveals potential of ASF1B as a prognostic and immunological biomarkerCited by: 25
Author(s): Xinyao Hu, Hua Zhu, Xiaoyu Zhang, Xueling He, Ximing Xu
Software Mentions: 9
Published: over 2 years ago
10.3389/fonc.2021.652850
Adenosquamous Carcinoma of the Cervix: A Population-Based AnalysisCited by: 0
Author(s): Pengfei Cui, Xiaofeng Cong, Chen Chen, Lei Yang, Ziling Liu
Software Mentions: 9
Published: almost 3 years ago
10.18632/aging.203455
Construction of an immune-related lncRNA signature as a novel prognosis biomarker for LUADCited by: 9
Author(s): Hang Chen, Wei Shen, Saiqi Ni, Menglu Sang, Shibo Wu, Yinyu Mu, Kaitai Liu, Ni Li, Linwen Zhu, Guodong Xu
Software Mentions: 9
Published: over 2 years ago
10.3389/fcell.2021.718624
Identification of a Novel Prognostic Gene Signature From the Immune Cell Infiltration Landscape of OsteosarcomaCited by: 15
Author(s): Lei Fan, Jingtao Ru, Tao Liu, Chi Ma
Software Mentions: 9
Published: over 2 years ago
10.3390/insects12070577
Transcriptome Analyses Provide Insights into the Aggressive Behavior toward Conspecific and Heterospecific in Thitarodes xiaojinensis (Lepidoptera: Hepialidae)Cited by: 1
Author(s): Zhongchen Rao, Li Cao, Hua Wu, Richou Han
Software Mentions: 9
Published: almost 3 years ago
10.18632/aging.202956
Gene expression profiles for an immunoscore model in bone and soft tissue sarcomaCited by: 5
Author(s): Jingyuan Fan, Xinyi Qin, Rong‐Quan He, Jie Ma, Qingjun Wei
Software Mentions: 9
Published: about 3 years ago
10.1155/2021/6290261
Identification of a Tumor Microenvironment-Related Gene Signature Indicative of Disease Prognosis and Treatment Response in Colon CancerCited by: 24
Author(s): Wenzheng Chen, Jianfeng Huang, Jianbo Xiong, Pengcheng Fu, Changyu Chen, Yi Liu, Zhengrong Li, Zhigang Jie, Yi Cao
Software Mentions: 9
Published: almost 3 years ago
10.3389/fonc.2021.624395
Comprehensive Analysis of Expression Regulation for RNA m6A Regulators With Clinical Significance in Human CancersCited by: 12
Author(s): Xiaonan Liu, Pei Wang, Xufei Teng, Zhang Zhang, Shuhui Song
Software Mentions: 9
Published: about 3 years ago
10.1186/s12935-020-1113-6
Construction of a novel gene-based model for prognosis prediction of clear cell renal cell carcinomaCited by: 81
Author(s): Zedan Zhang, Enyu Lin, Hongkai Zhuang, Lu Xie, Xiaoqiang Feng, Jiumin Liu, Yuming Yu
Software Mentions: 9
Published: over 4 years ago
10.3389/fbioe.2019.00257
The Construction and Analysis of ceRNA Network and Patterns of Immune Infiltration in Mesothelioma With Bone MetastasisCited by: 23
Author(s): Runzhi Huang, Jiawen Wu, Zixuan Zheng, Guanghua Wang, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Haiyun Wang, Qi Lv, Tong Meng, Zongqiang Huang, Jie Zhang
Software Mentions: 9
Published: over 4 years ago
10.3389/fimmu.2021.623762
Gene Expression Classifier Reveals Prognostic Osteosarcoma Microenvironment Molecular SubtypesCited by: 14
Author(s): Yi-Jiang Song, Yanyang Xu, Cong Deng, Xuejun Zhu, Jianchang Fu, Hongmin Chen, Jinchang Lu, Huaiyuan Xu, Guohui Song, Qinglian Tang, Jin Wang
Software Mentions: 9
Published: about 3 years ago
10.15252/emmm.202012850
Immunodynamics of explanted human tumors for immuno‐oncologyCited by: 7
Author(s): Agathe Dubuisson, Jean-Eudes Fahrner, Anne-Gaëlle Goubet, Safae Terrisse, Nicolas Voisin, Charles Bayard, Sébastien Lofek, Damien Drubay, Delphine Bredel, Séverine Mouraud, Sandrine Susini, Alexandria P. Cogdill, Lucas Rebuffet, Elise Ballot, Nicolas Jacquelot, Vincent Thomas de Montpréville, Odile Casiraghi, C. Radulescu, Sophie Ferlicot, David J. Figueroa, Sapna Yadavilli, Jeremy D. Waight, Marc Ballas, Axel Hoos, Thomas Condamine, Bastien Parier, C. Gaudillat, Bertrand Routy, François Ghiringhelli, Lisa Derosa, Ingrid Breuskin, Mathieu Rouanne, Fabrice André, C. Lebâcle, H. Baumert, Marie Wislez, Élie Fadel, Isabelle Cremer, Laurence Albigès, Birgit Geoerger, Jean‐Yves Scoazec, Yohann Loriot, Guido Kroemer, Aurélien Marabelle, Mélodie Bonvalet, Laurence Zitvogel
Software Mentions: 9
Published: over 3 years ago
10.1186/s12885-021-07807-7
Molecular subtypes based on DNA methylation predict prognosis in lung squamous cell carcinomaCited by: 10
Author(s): Xiushen Li, Kechao Nie, Zhihua Zheng, Ruisheng Zhou, Yu‐Sheng Huang, Zeng Jie Ye, Fan He, Ying Tang
Software Mentions: 9
Published: over 3 years ago
10.3389/fgene.2019.00828
The Construction and Comprehensive Analysis of ceRNA Networks and Tumor-Infiltrating Immune Cells in Bone Metastatic MelanomaCited by: 19
Author(s): Runzhi Huang, Zhiwei Zeng, Guangyu Li, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Ruizhi Chang, Xu Zhang, Jie Zhang, Tong Meng, Zongqiang Huang
Software Mentions: 9
Published: over 4 years ago
10.3389/fgene.2021.610291
RNA-Binding Proteins Play an Important Role in the Prognosis of Patients With Testicular Germ Cell TumorCited by: 7
Author(s): Liangyu Yao, Rong Cong, Chengjian Ji, Xiang Zhou, Jiaochen Luan, Xuhui Meng, Ninghong Song
Software Mentions: 9
Published: about 3 years ago
10.1186/s12967-019-1950-z
Platelet count, aspirin use, and characteristics of host inflammatory responses in colorectal cancerCited by: 15
Author(s): Juha P. Väyrynen, Päivi Sirniö, Ilkka Minkkinen, Kai Klintrup, Toni Karhu, Jyrki Mäkelä, Karl‐Heinz Herzig, Tuomo J. Karttunen, Anne Tuomisto, Markus J. Mäkinen
Software Mentions: 9
Published: almost 5 years ago
10.7717/peerj.10008
A model of twenty-three metabolic-related genes predicting overall survival for lung adenocarcinomaCited by: 3
Author(s): Zhenyu Zhao, Boxue He, Qidong Cai, Pengfei Zhang, Ping Xiong, Yuqian Zhang, Hui Xie, Xiang Wang
Software Mentions: 9
Published: over 3 years ago
10.3390/cancers12051076
Tumor-Infiltrating CD8 T Cells Predict Clinical Breast Cancer Outcomes in Young WomenCited by: 31
Author(s): Yong Won Jin, Pingzhao Hu
Software Mentions: 9
Published: about 4 years ago
10.3389/fonc.2020.568469
Aberrant RNA Splicing Events Driven by Mutations of RNA-Binding Proteins as Indicators for Skin Cutaneous Melanoma PrognosisCited by: 4
Author(s): Chao Mei, Pei-Yuan Song, Wei Zhang, Hong‐Hao Zhou, Xi Li, Zhao‐Qian Liu
Software Mentions: 8
Published: over 3 years ago
10.3389/fgene.2020.00805
Prognostic lncRNA, miRNA, and mRNA Signatures in Papillary Thyroid CarcinomaCited by: 8
Author(s): Kun Wang, Jing Xu, Lu Zhao, Shiyang Liu, Chen‐Guang Liu, Lin Zhang
Software Mentions: 8
Published: almost 4 years ago
10.3389/fonc.2021.597447
A Dynamic Transcription Factor Signature Along the Colorectal Adenoma-Carcinoma Sequence in Patients With Co-Occurrent Adenoma and CarcinomaCited by: 3
Author(s): Zongfu Pan, Ying He, Wei Zhu, Tao Xu, Xiaoping Hu, Ping Huang
Software Mentions: 8
Published: almost 3 years ago
10.26508/lsa.202000817
Profiles of histidine-rich glycoprotein associate with age and risk of all-cause mortalityCited by: 7
Author(s): Mun‐Gwan Hong, Tea Dodig‐Crnković, Xu Chen, Kimi Drobin, Woojoo Lee, Yunzhang Wang, Fredrik Edfors, David Kotol, Cecilia Engel Thomas, Ronald Sjöberg, Jacob Odeberg, Anders Hamsten, Angela Silveira, Per Hall, Peter Nilsson, Yudi Pawitan, Mathias Uhlén, Nancy L. Pedersen, Sara Hägg, Patrik K. E. Magnusson, Jochen M. Schwenk
Software Mentions: 8
Published: almost 4 years ago
10.1093/conphys/coab047
An organizing feature of bumble bee life history: worker emergence promotes queen reproduction and survival in young nestsCited by: 7
Author(s): Erica Sarro, Penglin Sun, Kerry E. Mauck, Damaris Rodriguez-Arellano, Naoaki Yamanaka, S. Hollis Woodard
Software Mentions: 8
Published: over 3 years ago
10.3399/bjgp20X713981
Association of prior lymphopenia with mortality in pneumonia: a cohort study in UK primary careCited by: 6
Author(s): Fergus Hamilton, David Arnold, Rupert Payne
Software Mentions: 8
Published: over 3 years ago
10.3389/fonc.2019.01310
Development and Validation of an IDH1-Associated Immune Prognostic Signature for Diffuse Lower-Grade GliomaCited by: 31
Author(s): Xiaoyun Deng, Dongdong Lin, Bo Chen, Xiaojia Zhang, Xingxing Xu, Zhisheng Yang, Xuchao Shen, Liang Yang, Xiaoyong Lu, Song Huang, Bo Yin, Nu Zhang, Jian Lin
Software Mentions: 8
Published: over 4 years ago
10.1186/s12957-021-02328-w
Identification of novel antioxidant gene signature to predict the prognosis of patients with gastric cancerCited by: 10
Author(s): Jianhua Wu, Xuan Wang, Nan Wang, Li Ma, Xin Xie, Hao Zhang, Huafeng Kang, Zhangjian Zhou
Software Mentions: 8
Published: almost 3 years ago
10.3389/fonc.2020.01198
Immune Landscape of the Tumor Microenvironment Identifies Prognostic Gene Signature CD4/CD68/CSF1R in OsteosarcomaCited by: 25
Author(s): Yi-Jiang Song, Yanyang Xu, Xuejun Zhu, Jianchang Fu, Cong Deng, Hongmin Chen, Huaiyuan Xu, Guohui Song, Jinchang Lu, Qinglian Tang, Jin Wang
Software Mentions: 8
Published: almost 4 years ago
10.1128/mSystems.00852-20
Virulence of the Pathogen Porphyromonas gingivalis Is Controlled by the CRISPR-Cas Protein Cas3Cited by: 16
Author(s): José O. Solbiati, Ana E. Duran-Pinedo, Fernanda Godoy Rocha, Frank C. Gibson, Jorge Frias-Lopez
Software Mentions: 8
Published: over 3 years ago
10.3389/fgene.2021.650554
Exploration of the Role of m6 A RNA Methylation Regulators in Malignant Progression and Clinical Prognosis of Ovarian CancerCited by: 4
Author(s): Qinglv Wei, Dan Yang, Xiaoyi Liu, Hongyan Zhao, Yang Yu, Jing Xu, Tao Liu, Ping Yi
Software Mentions: 8
Published: almost 3 years ago
10.3389/fonc.2021.642144
Complement C1q (C1qA, C1qB, and C1qC) May Be a Potential Prognostic Factor and an Index of Tumor Microenvironment Remodeling in OsteosarcomaCited by: 33
Author(s): Longhao Chen, Jinfu Liu, Yan Lu, Xinyu He, Chi Zhang, Huanyi Zhou
Software Mentions: 8
Published: about 3 years ago
10.3389/fgene.2019.01143
Identification of a Tumor Microenvironment-Related Eight-Gene Signature for Predicting Prognosis in Lower-Grade GliomasCited by: 24
Author(s): Jun Su, Wenyong Long, Qianquan Ma, Kai Xiao, Li Yang, Qian Xiao, Gang Peng, Jian Yuan, Qing Liu
Software Mentions: 8
Published: over 4 years ago
10.3390/cells8101161
An Efficient and Flexible Method for Deconvoluting Bulk RNA-Seq Data with Single-Cell RNA-Seq DataCited by: 15
Author(s): Xifang Sun, Shuang Sun, Sheng Yang
Software Mentions: 8
Published: over 4 years ago
10.1038/s41598-021-95068-6
CENPL, ISG20L2, LSM4, MRPL3 are four novel hub genes and may serve as diagnostic and prognostic markers in breast cancerCited by: 17
Author(s): Jun Yin, Chen Lin, Meng Jiang, Xuhai Tang, Danlin Xie, Jingwen Chen, Rongqin Ke
Software Mentions: 8
Published: almost 3 years ago
10.3390/v12090956
Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential SurvivalCited by: 17
Author(s): Allison R. Kolbe, Matthew L. Bendall, Alexander T. Pearson, Doru Paul, Douglas F. Nixon, Marcos Pérez‐Losada, Keith A. Crandall
Software Mentions: 8
Published: over 3 years ago
10.3389/fgene.2021.647353
Identification of Hub Genes and Their Correlation With Immune Infiltration Cells in Hepatocellular Carcinoma Based on GEO and TCGA DatabasesCited by: 22
Author(s): Rui Huang, Jinying Liu, Hui Li, Lierui Zheng, Haojun Jin, Yaqing Zhang, Wei Ma, Junhong Su, Min Wang, Kun Yang
Software Mentions: 8
Published: about 3 years ago
10.1038/s41598-020-75541-4
Stromal microenvironment promoted infiltration in esophageal adenocarcinoma and squamous cell carcinoma: a multi-cohort gene-based analysisCited by: 6
Author(s): Jiali Li, Zhao-Yi Zeng, Xueping Jiang, Nannan Zhang, Yanping Gao, Yuan Luo, Wenjie Sun, Shuying Li, Jiangbo Ren, Yan Gong, Conghua Xie
Software Mentions: 8
Published: over 3 years ago
10.1155/2020/5843874
Identification of Biomarkers to Construct a Competing Endogenous RNA Network and Establishment of a Genomic-Clinicopathologic Nomogram to Predict Survival for Children with Rhabdoid Tumors of the KidneyCited by: 1
Author(s): Xiaoqing Wang, Xiangyu Wu, Tianyou Li, Meng Cui, Lichao Zhu, Gang Wang, Feng Guo
Software Mentions: 8
Published: over 3 years ago
10.1371/journal.pone.0247836
Integrated analysis of RNA-binding proteins in thyroid cancerCited by: 4
Author(s): Zhen Jing, Zhe Song, Wenjie Su, Qun Zeng, Jiacen Li, Qi Sun
Software Mentions: 8
Published: about 3 years ago
10.1161/CIRCEP.120.008651
Complete Electroanatomic Imaging of the Diastolic Pathway Is Associated With Improved Freedom From Ventricular Tachycardia RecurrenceCited by: 22
Author(s): Alexios Hadjis, Antonio Frontera, Luca Rosario Limite, Caterina Bisceglia, Ludovica Bognoni, Luca Foppoli, Felicia Lipartiti, Gabriele Paglino, Andrea Radinovic, Georgio Tsitsinakis, Federico Calore, Paolo Della Bella
Software Mentions: 8
Published: over 3 years ago
10.1038/s41598-021-97090-0
Prognostic nomogram for predicting 5-year overall survival in Chinese patients with high-grade osteosarcomaCited by: 4
Author(s): Zhihong Yao, Zunxian Tan, Jifei Yang, Yihao Yang, Cao Wang, Jiaxiang Chen, Yanan Zhu, Tiying Wang, Lei Han, Lin Zhu, Zuozhang Yang
Software Mentions: 8
Published: over 2 years ago
10.1038/s41598-020-61643-6
Whole genome analysis identifies the association of TP53 genomic deletions with lower survival in Stage III colorectal cancerCited by: 7
Author(s): Xia Li, Paul Van Hummelen, Matthew Kubit, Ho‐Joon Lee, John Bell, Susan M. Grimes, Christina Wood-Bouwens, Stephanie Greer, Tyler Barker, Derrick S. Haslem, James M. Ford, Gail Fulde, Hanlee P. Ji, Lincoln Nadauld
Software Mentions: 8
Published: about 4 years ago
10.1038/s41375-020-01096-y
Copy number evolution and its relationship with patient outcome—an analysis of 178 matched presentation-relapse tumor pairs from the Myeloma XI trialCited by: 21
Author(s): James Croft, Sidra Ellis, Amy L. Sherborne, Kim A. Sharp, Amy Price, Matthew Jenner, Mark T. Drayson, Roger G. Owen, Sally Chown, Jindriska Lindsay, Kamaraj Karunanithi, Hannah Hunter, Walter M. Gregory, Faith E. Davies, Gareth J. Morgan, Gordon Cook, Lilit Atanesyan, Suvi Savola, David A. Cairns, Graham Jackson, Richard S. Houlston, Martin Kaiser
Software Mentions: 8
Published: over 3 years ago
10.3390/cancers11101606
A Toolbox for Functional Analysis and the Systematic Identification of Diagnostic and Prognostic Gene Expression Signatures Combining Meta-Analysis and Machine LearningCited by: 12
Author(s): Johannes A Vey, Lorenz A. Kapsner, Maximilian Fuchs, Philipp Unberath, Giulia Veronesi, Meik Kunz
Software Mentions: 8
Published: over 4 years ago
10.1155/2020/5717498
An Integrated Autophagy-Related Long Noncoding RNA Signature as a Prognostic Biomarker for Human Endometrial Cancer: A Bioinformatics-Based ApproachCited by: 14
Author(s): Ziwei Wang, Jun Zhang, Yan Liu, Rong Zhao, Xing Zhou, Hongbo Wang
Software Mentions: 8
Published: over 3 years ago
10.1038/s41598-018-36696-3
Immune cell characteristics and cytokine responses in adult HIV-negative tuberculous meningitis: an observational cohort studyCited by: 23
Author(s): Arjan van Laarhoven, Sofiati Dian, Suzanne van Dorp, Feby Purnama, Valerie A C M Koeken, Emira Diandini, Fitria Utami, Resvi Livia, Lika Apriani, Edwin Ardiansyah, Rob ter Horst, Mihai G. Netea, Tri Hanggono Achmad, Philip C. Hill, Rovina Ruslami, Bachti Alisjahbana, James E. Ussher, Agnes Rengga Indrati, Ayesha Verrall, Ahmad Rizal Ganiem, Reinout van Crevel
Software Mentions: 8
Published: over 5 years ago
10.1186/s13148-020-00838-0
DNA methylation outlier burden, health, and ageing in Generation Scotland and the Lothian Birth Cohorts of 1921 and 1936Cited by: 17
Author(s): Anne Seeboth, Daniel L. McCartney, Yunzhang Wang, Robert F. Hillary, Anna J. Stevenson, Rosie M. Walker, Archie Campbell, Kathryn Evans, Andrew M. McIntosh, Sara Hägg, Ian J. Deary, Riccardo E. Marioni
Software Mentions: 8
Published: about 4 years ago
10.18632/aging.103707
A 12-immune cell signature to predict relapse and guide chemotherapy for stage II colorectal cancerCited by: 4
Author(s): Xianglong Tian, Xiaoqiang Zhu, Meng Wu, Shiguang Bai, Min Shi, Shihao Xiang, Zhao Chun-hua, Yugang Wang
Software Mentions: 8
Published: over 3 years ago
10.1038/s41598-020-75161-y
Strap muscle invasion in differentiated thyroid cancer does not impact disease-specific survival: a population-based studyCited by: 4
Author(s): Ja Kyung Yoon, Jandee Lee, Min Jung Kim, Jung Hyun Yoon, Vivian Youngjean Park, Kyunghwa Han, Jin Young Kwak
Software Mentions: 8
Published: over 3 years ago
10.1002/cam4.4035
The prognostic value of sarcopenia combined with preoperative fibrinogen–albumin ratio in patients with intrahepatic cholangiocarcinoma after surgery: A multicenter, prospective studyCited by: 10
Author(s): Haitao Yu, Mingxun Wang, Yi Wang, Jinhuan Yang, Liming Deng, Wenming Bao, Bangjie He, Lin Zou, Zi-Yan Chen, Kaiyu Chen, Baofu Zhang, Fangting Liu, Zhengping Yu, Long‐Yun Ye, Bin Jin, Gang Chen
Software Mentions: 8
Published: almost 3 years ago
10.1186/s12859-019-2974-3
miRFA: an automated pipeline for microRNA functional analysis with correlation support from TCGA and TCPA expression data in pancreatic cancerCited by: 11
Author(s): Emmy Borgmästars, Hendrik A de Weerd, Zelmina Lubovac-Pilav, Malin Sund
Software Mentions: 8
Published: almost 5 years ago
10.3390/jcm9030711
Deregulation of the Purine Pathway in Pre-Transplant Liver Biopsies Is Associated with Graft Function and Survival after TransplantationCited by: 4
Author(s): Jin Xu, Mohammad Hassan-Ally, Ana María Casas-Ferreira, Tommi Suvitaival, Yun Ma, Hector Vilca‐Melendez, Mohamed Rela, Nigel Heaton, Wayel Jassem, Cristina Legido‐Quigley
Software Mentions: 8
Published: about 4 years ago
10.3389/fcell.2021.651575
An N6-Methyladenosine-Related Gene Set Variation Score as a Prognostic Tool for Lung AdenocarcinomaCited by: 8
Author(s): Huijuan Zhang, Jing Hu, Aina Liu, Huajun Qu, Fenge Jiang, Congcong Wang, Steven Mo, Ping Sun
Software Mentions: 8
Published: almost 3 years ago
10.3390/cancers13122955
PLEK2, RRM2, GCSH: A Novel WWOX-Dependent Biomarker Triad of Glioblastoma at the Crossroads of Cytoskeleton Reorganization and Metabolism AlterationsCited by: 10
Author(s): Żaneta Kałuzińska, Damian Kołat, Andrzej K. Bednarek, Elżbieta Płuciennik
Software Mentions: 8
Published: almost 3 years ago
10.1111/jcmm.16712
Cytokeratin 5 and cytokeratin 20 inversely correlate with tumour grading in Ta non‐muscle‐invasive bladder cancerCited by: 7
Author(s): Tim Muilwijk, Murat Akand, Frank Van der Aa, Vincent De Coninck, Marc Claessens, Robert Hente, Markus Eckstein, Yves Allory, Louis Libbrecht, Steven Joniau, Thomas Gevaert
Software Mentions: 8
Published: almost 3 years ago
10.3390/cancers13112782
Early Survival Prediction Framework in CD19-Specific CAR-T Cell Immunotherapy Using a Quantitative Systems Pharmacology ModelCited by: 16
Author(s): Anna Mueller‐Schoell, Nahum Puebla-Osorio, Robin Michelet, Michael R. Green, Annette Künkele, Wilhelm Huisinga, Paolo Strati, Beth Chasen, Sattva S. Neelapu, Cassian Yee, Charlotte Kloft
Software Mentions: 8
Published: almost 3 years ago
10.3389/fcell.2021.704242
Two Similar Signatures for Predicting the Prognosis and Immunotherapy Efficacy of Stomach Adenocarcinoma PatientsCited by: 4
Author(s): Taohua Yue, Shuai Zuo, Jing Zhu, Shuqin Guo, Zhihao Huang, Jichang Li, Xin Wang, Yucun Liu, Shanwen Chen, Pengyuan Wang
Software Mentions: 8
Published: almost 3 years ago
10.1111/jcmm.15601
Novel gene signatures for prognosis prediction in ovarian cancerCited by: 25
Author(s): Mingyang Bao, Lihua Zhang, Yue‐Qing Hu
Software Mentions: 8
Published: almost 4 years ago
10.1186/s13613-020-00783-4
Protracted viral shedding and viral load are associated with ICU mortality in Covid-19 patients with acute respiratory failureCited by: 19
Author(s): Laurent Bitker, François Dhelft, Louis Chauvelot, Émilie Frobert, Laure Folliet, Mehdi Mezidi, Sophie Trouillet‐Assant, Alexandre Belot, Bruno Lina, Florent Wallet, Jean-Christophe Richard
Software Mentions: 8
Published: over 3 years ago
10.3389/fmolb.2021.657087
N6-Methyladenosine RNA Methylation Regulator-Related Alternative Splicing (AS) Gene Signature Predicts Non–Small Cell Lung Cancer PrognosisCited by: 16
Author(s): Zhenyu Zhao, Qidong Cai, Peng-Fei Zhang, Boxue He, Ping Xiong, Guangxu Tu, Weilin Peng, Li Wang, Fenglei Yu, Xiang Wang
Software Mentions: 8
Published: almost 3 years ago
10.7717/peerj.12070
Prognostic impact of a lymphocyte activation-associated gene signature in GBM based on transcriptome analysisCited by: 1
Author(s): Yujia Lan, Erjie Zhao, Xinxin Zhang, Xiaojing Zhu, Linyun Wan, Aditya Suru, Yanyan Ping, Yihan Wang
Software Mentions: 8
Published: over 2 years ago
10.7150/jca.49266
Establishment of the Prognostic Index Reflecting Tumor Immune Microenvironment of Lung Adenocarcinoma Based on Metabolism-Related GenesCited by: 13
Author(s): Jianguo Zhang, Jianzhong Zhang, Cheng Yuan, Yuan Luo, Yangyi Li, Panpan Dai, Wenjie Sun, Nannan Zhang, Jiangbo Ren, Mengjie Zhang, Yan Gong, Conghua Xie
Software Mentions: 8
Published: over 4 years ago
10.3390/ani11030782
Impact of 2 Versus 1 Colostrum Meals on Failure of Transfer of Passive Immunity, Pre-Weaning Morbidity and Mortality, and Performance of Dairy Calves in a Large Dairy HerdCited by: 20
Author(s): Ángel Abuelo, Faith Cullens, Amanda L. Hanes, Jill L. Brester
Software Mentions: 8
Published: about 3 years ago
10.3389/fcell.2020.00308
Organoid-Transplant Model Systems to Study the Effects of Obesity on the Pancreatic Carcinogenesis in vivoCited by: 8
Author(s): Fabio Lupo, Geny Piro, Lorena Torroni, Pietro Delfino, Rosalinda Trovato, Borislav Rusev, Alessandra Fiore, Dea Filippini, Francesco De Sanctis, Marcello Manfredi, Emílio Marengo, Rita T. Lawlor, Maurizio Martini, Giampaolo Tortora, Stefano Ugel, Vincenzo Corbo, Davide Melisi, Carmine Carbone
Software Mentions: 8
Published: about 4 years ago
10.3389/fmolb.2021.613359
Identification of a Hypoxia-Related Signature for Predicting Prognosis and the Immune Microenvironment in Bladder CancerCited by: 10
Author(s): Minxiao Jiang, Ren Lang, Yuanlei Chen, Huan Wang, Haiyang Wu, Sheng Cheng, Gonghui Li, Shicheng Yu
Software Mentions: 8
Published: about 3 years ago
10.18632/aging.203266
Clinical significance and prognostic role of an immune-related gene signature in gastric adenocarcinomaCited by: 4
Author(s): Rui Mao, Kehao Liu, Nana Zhao, Pengsen Guo, Yingxin Wu, Zheng Wang, Yanjun Liu, Tongtong Zhang
Software Mentions: 8
Published: almost 3 years ago
10.3389/fneur.2021.651869
Network Mapping of Time to Antithrombotic Therapy Among Patients With Ischemic Stroke and Transient Ischemic Attack (TIA)Cited by: 1
Author(s): Thanh G. Phan, Benjamin Clissold, Shaloo Singhal, John Ly, Andy Lim, Jason Vuong, Sai-Yin Ho, Chelsea Matley, Talvika Kooblal, Henry Ma
Software Mentions: 8
Published: almost 3 years ago
10.3390/cancers13071561
NF2 and Canonical Hippo-YAP Pathway Define Distinct Tumor Subsets Characterized by Different Immune Deficiency and Treatment Implications in Human Pleural MesotheliomaCited by: 19
Author(s): Haitang Yang, Sean Hall, Beibei Sun, Liang Zhao, Yanyun Gao, Ralph A. Schmid, Swee T. Tan, Ren‐Wang Peng, Feng Yao
Software Mentions: 8
Published: about 3 years ago
10.3389/fmed.2021.644053
Comprehensive Analysis Identifies Potential Ferroptosis-Associated mRNA Therapeutic Targets in Ovarian CancerCited by: 16
Author(s): Jiyan Zhang, Jie Xi, Ping Huang, Saitian Zeng
Software Mentions: 8
Published: about 3 years ago
10.1001/jamanetworkopen.2021.15985
Assessment of Effectiveness of 1 Dose of BNT162b2 Vaccine for SARS-CoV-2 Infection 13 to 24 Days After ImmunizationCited by: 92
Author(s): Gabriel Chodick, Lilac Tene, Tal Patalon, Sivan Gazit, Amir Ben‐Tov, Dani Cohen, Khitam Muhsen
Software Mentions: 8
Published: almost 3 years ago
10.1186/s13059-021-02261-x
Long-read transcriptome sequencing reveals abundant promoter diversity in distinct molecular subtypes of gastric cancerCited by: 37
Author(s): Kie Kyon Huang, Jiawen Huang, Jeanie Wu, Ming‐Hui Lee, Su Ting Tay, Vikrant Kumar, R. Kalpana, Nisha Padmanabhan, Chong Xu, Angie Lay Keng Tan, Charlene Chan, Dennis Kappei, Jonathan Göke, Patrick Tan
Software Mentions: 8
Published: over 3 years ago
10.1186/s12920-020-0729-7
ERα-related chromothripsis enhances concordant gene transcription on chromosome 17q11.1-q24.1 in luminal breast cancerCited by: 6
Author(s): Chun-Lin Lin, Xueying Tan, Chun-Liang Chen, Meena Kusi, Chia-Nung Hung, Chih-Wei Chou, Ya-Ting Hsu, Chiou‐Miin Wang, Nameer B. Kirma, Ching-Hung Lin, Kate Lathrop, Richard M. Elledge, Virginia Kaklamani, Kohzoh Mitsuya, Tim H.M. Huang
Software Mentions: 8
Published: about 4 years ago
10.3389/fimmu.2021.651056
Immune Infiltration Subtypes Characterization and Identification of Prognosis-Related lncRNAs in Adenocarcinoma of the Esophagogastric JunctionCited by: 12
Author(s): Xin Hu, Liuxing Wu, Ben Liu, Kexin Chen
Software Mentions: 8
Published: almost 3 years ago
10.3389/fsurg.2021.590448
Intravesical Recurrence After Radical Nephroureterectomy of Upper Urinary Tract Urothelial Carcinoma: A Large Population-Based Investigation of Clinicopathologic Characteristics and Survival OutcomesCited by: 6
Author(s): Jie Wu, Peihang Xu, Wenjie Luo, Bo Dai, Yijun Shen, Dingwei Ye, Yu-Chen Wang, Yiping Zhu
Software Mentions: 8
Published: about 3 years ago
10.7717/peerj.11599
A seven-lncRNA signature for predicting Ewing’s sarcomaCited by: 8
Author(s): Zhihui Chen, Xinyu Wang, Guozhu Wang, Bin Xiao, Zhe Ma, Hongliang Huo, Weiwei Li
Software Mentions: 8
Published: almost 3 years ago
10.3389/fonc.2021.630905
Identification of a Metabolism-Related Signature for the Prediction of Survival in Endometrial Cancer PatientsCited by: 14
Author(s): Fan Yuan, Xingchen Li, Li Tian, Jianliu Wang
Software Mentions: 8
Published: about 3 years ago
10.3389/fonc.2020.590006
AUNIP Expression Is Correlated With Immune Infiltration and Is a Candidate Diagnostic and Prognostic Biomarker for Hepatocellular Carcinoma and Lung AdenocarcinomaCited by: 14
Author(s): Chenxi Ma, Wenyan Kang, Lu Yu, Zongcheng Yang, Di Tian
Software Mentions: 8
Published: over 3 years ago
10.3390/cancers13143621
HPV Infection Leaves a DNA Methylation Signature in Oropharyngeal Cancer Affecting Both Coding Genes and Transposable ElementsCited by: 10
Author(s): Diego Camuzi, Luisa Aguirre Buexm, Simone De Queiroz Chaves Lourenço, Davide Degli Esposti, Cyrille Cuenin, Monique de Souza Almeida Lopes, Francesca Manara, Fazlur Rahman Talukdar, Zdenko Herceg, Luís Felipe Ribeiro Pinto, Sheila Coelho Soares-Lima
Software Mentions: 8
Published: almost 3 years ago
10.18632/aging.103947
Autophagy-related long noncoding RNAs can predict prognosis in patients with bladder cancerCited by: 11
Author(s): Cong Lai, Zhenyu Wu, Juan Shi, Kaiwen Li, Jiamin Zhu, Zhenhong Chen, Cheng Liu, Kecheng Xu
Software Mentions: 8
Published: over 3 years ago
10.1002/cam4.2493
Integrated transcriptomics reveals master regulators of lung adenocarcinoma and novel repositioning of drug candidatesCited by: 12
Author(s): Marco Antônio De Bastiani, Fábio Klamt
Software Mentions: 8
Published: over 4 years ago
10.1002/cam4.2665
Genome‐wide screening of abberant methylated drivers combined with relative risk loci in bladder cancerCited by: 2
Author(s): Chuanjie Zhang, Kangjie Shen, Yuxiao Zheng, Feng Qi, Jun Luo
Software Mentions: 8
Published: over 4 years ago
10.3389/fphar.2021.608778
Unraveling Gene Fusions for Drug Repositioning in High-Risk NeuroblastomaCited by: 0
Author(s): Zhichao Liu, Xi Chen, Ruth Roberts, Ruili Huang, Mike Mikailov, Weida Tong
Software Mentions: 8
Published: about 3 years ago
10.3389/fonc.2021.665360
DDX60 Is Associated With Glioma Malignancy and Serves as a Potential Immunotherapy BiomarkerCited by: 7
Author(s): Jingwen Zhang, Minjie Fu, Mengli Zhang, Jinsen Zhang, Zunguo Du, Hongyi Zhang, Wei Hua, Ying Mao
Software Mentions: 8
Published: almost 3 years ago
10.3390/cancers13184656
The Evolution and Prognostic Role of Tumour-Infiltrating Lymphocytes and Peripheral Blood-Based Biomarkers in Inflammatory Breast Cancer Patients Treated with Neoadjuvant ChemotherapyCited by: 7
Author(s): Christophe Van Berckelaer, Iris Vermeiren, Leonie Vercauteren, Charlotte Rypens, Gizem Öner, Xuan Bich Trinh, Wiebren A.A. Tjalma, Glenn Broeckx, Emmanuelle Charafe‐Jauffret, Steven Van Laere, François Bertucci, Cécile Colpaert, Peter van Dam
Software Mentions: 8
Published: over 2 years ago
10.1186/s12935-020-01707-9
PPP2R2B downregulation is associated with immune evasion and predicts poor clinical outcomes in triple-negative breast cancerCited by: 13
Author(s): Li Zheng, Yaming Li, Xiaolong Wang, Qifeng Yang
Software Mentions: 8
Published: over 3 years ago
10.3389/fimmu.2021.670040
ARID1A, ARID1B, and ARID2 Mutations Serve as Potential Biomarkers for Immune Checkpoint Blockade in Patients With Non-Small Cell Lung CancerCited by: 24
Author(s): Guangsheng Zhu, Ruifeng Shi, Yongwen Li, Zihe Zhang, Songlin Xu, Chen Chen, Peijun Cao, Hongbing Zhang, Minghui Liu, Zhengxia Pan, Hongyu Liu, Jun Chen
Software Mentions: 8
Published: over 2 years ago
10.1097/MD.0000000000027374
Identification and validation of a hypoxia-related prognostic signature in clear cell renal cell carcinoma patientsCited by: 7
Author(s): Zhengtian Li, Gang Du, Rong Zhao, Weibo Yang, Chan Li, Jun Huang, Zhenpei Wen, Hening Li, Bo Zhang
Software Mentions: 8
Published: over 2 years ago
10.3389/fonc.2021.633995
A Nomogram for Predicting Multiple Metastases in Metastatic Colorectal Cancer Patients: A Large Population-Based StudyCited by: 7
Author(s): Yuhang Ge, Renshen Xiang, Jun Ren, Wei Song, Wei Lu, Tao Fu
Software Mentions: 8
Published: about 3 years ago
10.1186/s12885-021-08322-5
A metabolism-related 4-lncRNA prognostic signature and corresponding mechanisms in intrahepatic cholangiocarcinomaCited by: 12
Author(s): Wei Zou, Zizheng Wang, Fei Wang, Lincheng Li, Rong Liu, Minggen Hu
Software Mentions: 8
Published: almost 3 years ago