Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/cells8101161

https://doi.org/10.3390/cells8101161

An Efficient and Flexible Method for Deconvoluting Bulk RNA-Seq Data with Single-Cell RNA-Seq Data

Cited by: 15
Author(s): Xifang Sun, Shuang Sun, Sheng Yang
Published: about 5 years ago

Software Mentions 8

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: DeconRNASeq
Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data
Papers that mentioned: 23
bioconductor: TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Papers that mentioned: 276
cran: Rcpp
Seamless R and C++ Integration
Papers that mentioned: 152
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: survival
Survival Analysis
Papers that mentioned: 1,690
cran: survminer
Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473
pypi: survival
Add static script_dir() method to Path
Papers that mentioned: 1,690