cran: reshape2 | Projects | Ecosyste.ms: Papers

10.7717/peerj.5727

An automated, high-throughput method for standardizing image color profiles to improve image-based plant phenotyping
Cited by: 30
Author(s): Jeffrey C. Berry, Noah Fahlgren, Alexandria A Pokorny, Rebecca Bart, Kira M. Veley
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pntd.0005050

Factors Associated with the Time of Admission among Notified Dengue Fever Cases in Region VIII Philippines from 2008 to 2014
Cited by: 5
Author(s): J Abello, Julita Gil Cuesta, Boyd Roderick Cerro, Debarati Guha-Sapir
Software Mentions: 7
Published: about 8 years ago

10.1371/journal.pone.0211692

The impact of bipedal mechanical loading history on longitudinal long bone growth
Cited by: 7
Author(s): A. D. Foster
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0256068

Parasitism to mutualism continuum for Joshua trees inoculated with different communities of arbuscular mycorrhizal fungi from a desert elevation gradient
Cited by: 5
Author(s): Jennifer Harrower, Gregory S. Gilbert
Software Mentions: 7
Published: about 3 years ago

10.1371/journal.pone.0242987

A metagenomic glimpse into the gut of wild and domestic animals: Quantification of antimicrobial resistance and more
Cited by: 24
Author(s): Magdalena Skarżyńska, Pimlapas Leekitcharoenphon, René S. Hendriksen, Frank Møller Aarestrup, Dariusz Wasyl
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pone.0258157

Dynamically expressed genes provide candidate viability biomarkers in a model coccidian
Cited by: 4
Author(s): Matthew S. Tucker, Celia O’Brien, Mark C. Jenkins, Benjamin M. Rosenthal
Software Mentions: 7
Published: about 3 years ago

10.1525/collabra.116

Individual Importance Weighting of Domain Satisfaction Ratings does Not Increase Validity
Cited by: 21
Author(s): Julia M. Rohrer, Stefan C. Schmukle
Software Mentions: 7
Published: almost 7 years ago

10.3389/fimmu.2020.609891

Targeted De-Methylation of the FOXP3-TSDR Is Sufficient to Induce Physiological FOXP3 Expression but Not a Functional Treg Phenotype
Cited by: 26
Author(s): Christopher Kressler, Gilles Gasparoni, Karl Nordström, Dania Hamo, Abdulrahman Salhab, Christoforos Dimitropoulos, Sascha Tierling, Petra Reinke, Hans‐Dieter Volk, Jörn Walter, Alf Hamann, Julia K. Polansky
Software Mentions: 7
Published: almost 4 years ago

10.3389/fmicb.2020.536978

Repetitive Sampling and Control Threshold Improve 16S rRNA Gene Sequencing Results From Produced Waters Associated With Hydraulically Fractured Shale
Cited by: 2
Author(s): Jennifer L. Shelton, Elliott P. Barnhart, Leslie F. Ruppert, Aaron M. Jubb, Madalyn S. Blondes, Christina A. DeVera
Software Mentions: 7
Published: about 4 years ago

10.3389/fmicb.2020.628755

Horizontal Transmission of the Heritable Protective Endosymbiont Hamiltonella defensa Depends on Titre and Haplotype
Cited by: 11
Author(s): Heidi Kaech, Christoph Vorburger
Software Mentions: 7
Published: almost 4 years ago

10.1074/jbc.RA119.008853

Transcriptional profiling of single fiber cells in a transgenic paradigm of an inherited childhood cataract reveals absence of molecular heterogeneity
Cited by: 4
Author(s): Suraj P. Bhat, Rajendra K. Gangalum, Dongjae Kim, Serghei Mangul, Raj K. Kashyap, Xinkai Zhou, David Elashoff
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-020-67324-8

Venom alkaloids against Chagas disease parasite: search for effective therapies
Cited by: 10
Author(s): Rafael Cardoso Maciel Costa Silva, Eduardo Gonçalves Paterson Fox, Fabio M. Gomes, Daniel F. Feijó, Isabela Ramos, Carolina M. Koeller, Tatiana F. R. Costa, Nathalia S. Rodrigues, Ana Paula Lima, Geórgia C. Atella, Kildare Miranda, Alejandra Cecilia Schoijet, Guillermo D. Alonso, Ednildo A. Machado, Norton Heise
Software Mentions: 7
Published: over 4 years ago

10.1038/s41398-020-01176-8

The placenta protects the fetal circulation from anxiety-driven elevations in maternal serum levels of brain-derived neurotrophic factor
Cited by: 7
Author(s): Hayley Dingsdale, Xinsheng Nan, Samantha M. Garay, Annett Mueller, Lorna Sumption, Pedro Chacón-Fernández, Isabel Martinez‐Garay, Cédric Ghevaert, Yves‐Alain Barde, John Roshan
Software Mentions: 7
Published: almost 4 years ago

10.1128/mSphere.00737-20

Comparative Genomics Analyses of Lifestyle Transitions at the Origin of an Invasive Fungal Pathogen in the Genus Cryphonectria
Cited by: 16
Author(s): Lea Stauber, Simone Prospero, Daniel Croll
Software Mentions: 7
Published: about 4 years ago

10.1186/s13046-019-1505-4

A pre-existing population of ZEB2+ quiescent cells with stemness and mesenchymal features dictate chemoresistance in colorectal cancer
Cited by: 54
Author(s): Federica Francescangeli, Paola Contavalli, Maria Laura De Angelis, Silvia Careccia, Michele Signore, Tobias Haas, Federico Salaris, Marta Baiocchi, Alessandra Boe, Alessandro Giuliani, Olga Tcheremenskaia, Alfredo Pagliuca, Ombretta Guardiola, Gabriella Minchiotti, Lidia Colace, Antonio Ciardi, Vito D’Andrea, Filippo La Torre, Jan Paul Medema, Ruggero De Maria, Ann Zeuner
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12970-018-0262-7

Estimation of energy balance and training volume during Army Initial Entry Training
Cited by: 20
Author(s): Jeremy McAdam, Kaitlin McGinnis, Rian Ory, Kaelin C. Young, Andrew D. Frugé, Michael D. Roberts, JoEllen M. Sefton
Software Mentions: 7
Published: almost 7 years ago

10.1080/20002297.2019.1599652

The microbiota of the mother at birth and its influence on the emerging infant oral microbiota from birth to 1 year of age: a cohort study
Cited by: 21
Author(s): Eimear Hurley, David Mullins, Maurice P. J. Barrett, Carol Anne O’Shea, M J Kinirons, C. Anthony Ryan, Catherine Stanton, Helen Whelton, Hugh M. B. Harris, Paul W. O’Toole
Software Mentions: 7
Published: almost 6 years ago

10.3390/nu10091248

Effect of Whey Protein Supplementation on Physical Performance and Body Composition in Army Initial Entry Training Soldiers
Cited by: 15
Author(s): Jeremy McAdam, Kaitlin McGinnis, Darren T. Beck, Cody T. Haun, Matthew A. Romero, Petey W. Mumford, Paul A. Roberson, Kaelin C. Young, Keith R. Lohse, Lockwood Cm, Michael D. Roberts, Jo Ellen M. Sefton
Software Mentions: 7
Published: about 6 years ago

10.1038/s41598-019-45844-2

Intracellular Zn2+ transients modulate global gene expression in dissociated rat hippocampal neurons
Cited by: 35
Author(s): Lynn Sanford, Margaret C. Carpenter, Amy E. Palmer
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2017.01011

Diversity and Composition of Sulfate-Reducing Microbial Communities Based on Genomic DNA and RNA Transcription in Production Water of High Temperature and Corrosive Oil Reservoir
Cited by: 45
Author(s): Xiaoxiao Li, Jinfeng Liu, Lei Zhou, Serge Maurice Mbadinga, Shi‐Zhong Yang, Ji‐Dong Gu, Bo‐Zhong Mu
Software Mentions: 6
Published: over 7 years ago

10.1186/s13071-016-1597-z

Host-feeding patterns of mosquito species in Germany
Cited by: 51
Author(s): Jessica Börstler, Hanna Jöst, R. Garms, Andreas Krüger, Egbert Tannich, Norbert Becker, Jonas Schmidt‐Chanasit, Renke Lühken
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.ppat.1007187

Epidemiological significance of dengue virus genetic variation in mosquito infection dynamics
Cited by: 39
Author(s): Albin Fontaine, Sébastian Lequime, Isabelle Moltini-Conclois, Davy Jiolle, Isabelle Leparc-Goffart, Robert C. Reiner, Louis Lambrechts
Software Mentions: 6
Published: over 6 years ago

10.1001/jamanetworkopen.2021.5723

Preconception Thyrotropin Levels and Risk of Adverse Pregnancy Outcomes in Chinese Women Aged 20 to 49 Years
Cited by: 13
Author(s): Ying Yang, Tonglei Guo, Jinrong Fu, Jian Kuang, Yuanyuan Wang, Zhang Ya, Honggang Zhang, Yuan He, Zuoqi Peng, Qiaomei Wang, Haiping Shen, Yiping Zhang, Donghai Yan, Xu Ma, Haixia Guan
Software Mentions: 6
Published: over 3 years ago

10.3390/insects11110746

Mutual and Opposing Responses of Carabid Beetles and Predatory Wasps to Local and Landscape Factors in Vineyards
Cited by: 7
Author(s): Deniz Uzman, Martin H. Entling, Ilona Leyer, Annette Reineke
Software Mentions: 6
Published: about 4 years ago

10.1002/ece3.4679

Responses of macroalgae to CO2 enrichment cannot be inferred solely from their inorganic carbon uptake strategy
Cited by: 48
Author(s): Luna M. van der Loos, Matthias Schmid, Pablo P. Leal, Christina M. McGraw, Damon Britton, Andrew T. Revill, Patti Virtue, Peter D. Nichols, Catriona L. Hurd
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0106196

A Multi-Compartment Single and Multiple Dose Pharmacokinetic Comparison of Rectally Applied Tenofovir 1% Gel and Oral Tenofovir Disoproxil Fumarate
Cited by: 27
Author(s): Kuo Hsiung Yang, Craig W. Hendrix, Namandjé N. Bumpus, Julie Elliott, Karen Tanner, Christine Mauck, Ross D. Cranston, Ian McGowan, Nicola Richardson-Harman, Peter A. Anton, Angela D. M. Kashuba
Software Mentions: 6
Published: about 10 years ago

10.1186/s12864-021-07437-0

Transcriptomics analysis of Toxoplasma gondii-infected mouse macrophages reveals coding and noncoding signatures in the presence and absence of MyD88
Cited by: 7
Author(s): Kayla L. Menard, Lijing Bu, Eric Denkers
Software Mentions: 6
Published: over 3 years ago

10.3389/fphar.2021.692442

Development, Testing, Parameterisation and Calibration of a Human PBPK Model for the Plasticiser, Di-(2-propylheptyl) Phthalate (DPHP) Using in Silico, in vitro and Human Biomonitoring Data
Cited by: 6
Author(s): Kevin McNally, Craig Sams, Alex Hogg, Annie Lumen, George Loizou
Software Mentions: 6
Published: about 3 years ago

10.3389/fphys.2018.01767

Fractal and Multifractal Properties of Electrographic Recordings of Human Brain Activity: Toward Its Use as a Signal Feature for Machine Learning in Clinical Applications
Cited by: 29
Author(s): Lucas Gabriel Souza França, José García Vivas Miranda, Marco Leite, Niraj Sharma, Matthew C. Walker, Louis Lemieux, Yujiang Wang
Software Mentions: 6
Published: almost 6 years ago

10.7717/peerj.2452

Canopy position has a profound effect on soybean seed composition
Cited by: 27
Author(s): Steven C. Huber, Kunzhi Li, Randall L. Nelson, Alexander Ulanov, Catherine M. DeMuro, Ivan Baxter
Software Mentions: 6
Published: about 8 years ago

10.1186/s13073-019-0647-5

Prognostic value of B cells in cutaneous melanoma
Cited by: 73
Author(s): Sara R. Selitsky, Lisle E. Mose, Christof C. Smith, Shengjie Chai, Katherine A. Hoadley, Dirk P. Dittmer, Stergios J. Moschos, Joel S. Parker, Benjamin G. Vincent
Software Mentions: 6
Published: over 5 years ago

10.1186/gm509

Comparison of methods to identify aberrant expression patterns in individual patients: augmenting our toolkit for precision medicine
Cited by: 5
Author(s): Daniel Bottomly, Peter Ryabinin, Jeffrey W. Tyner, Bill H. Chang, Marc Loriaux, Brian J. Druker, Shannon K. McWeeney, Beth Wilmot
Software Mentions: 6
Published: almost 12 years ago

10.7554/eLife.50103

Developmental variability channels mouse molar evolution
Cited by: 14
Author(s): Luke Hayden, Kateřina Lochovská, Marie Sémon, Sabrina Renaud, Marie Laure Delignette-Muller, Maurine Vilcot, Renata Peterková, Maria Hovořáková, Sophie Pantalacci
Software Mentions: 6
Published: almost 5 years ago

10.1002/pld3.284

Maize brace roots provide stalk anchorage
Cited by: 21
Author(s): Jonathan W Reneau, Rajdeep S. Khangura, Adam Stager, Lindsay Erndwein, Teclemariam Weldekidan, Douglas D. Cook, Brian P. Dilkes, Erin E. Sparks
Software Mentions: 6
Published: about 4 years ago

10.1002/pld3.41

High‐fidelity detection of crop biomass quantitative trait loci from low‐cost imaging in the field
Cited by: 11
Author(s): Darshi Banan, Rachel Paul, Max Feldman, Mark W. Holmes, Hannah Schlake, Ivan Baxter, Hui Jiang, Andrew D. B. Leakey
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pntd.0008780

Genomic and transcriptional analysis of genes containing fibrinogen and IgSF domains in the schistosome vector Biomphalaria glabrata, with emphasis on the differential responses of snails susceptible or resistant to Schistosoma mansoni
Cited by: 8
Author(s): Lijun Lu, Eric S. Loker, Coen M. Adema, Si-Ming Zhang, Lijing Bu
Software Mentions: 6
Published: about 4 years ago

10.1038/s41436-018-0337-5

Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions
Cited by: 65
Author(s): Sulev Reisberg, Kristi Krebs, Maarja Lepamets, Mart Kals, Reedik Mägi, Kristjan Metsalu, Volker M. Lauschke, Jaak Vilo, Lili Milani
Software Mentions: 6
Published: over 5 years ago

10.3390/ijerph18094966

Core and Whole Body Vibration Exercise Influences Muscle Sensitivity and Posture during a Military Foot March
Cited by: 2
Author(s): Kaitlin D. Lyons, Aaron G Parks, Oluwagbemiga O DadeMatthews, Nilophar L Zandieh, Paige McHenry, Kenneth E. Games, Michael D. Goodlett, William M. Murrah, Jaimie A. Roper, JoEllen M. Sefton
Software Mentions: 6
Published: over 3 years ago

10.3390/ijerph18030954

Photosynthesis and Related Physiological Parameters Differences Affected the Isoprene Emission Rate among 10 Typical Tree Species in Subtropical Metropolises
Cited by: 6
Author(s): Junyao Lyu, Feng Xiong, Ning Sun, Yi‐Heng Li, Chunjiang Liu, Shan Yin
Software Mentions: 6
Published: almost 4 years ago

10.1128/mSystems.00003-19

16S rRNA/rRNA Gene Ratios and Cell Activity Staining Reveal Consistent Patterns of Microbial Activity in Plant-Associated Soil
Cited by: 39
Author(s): Alan W. Bowsher, Patrick J. Kearns, Ashley Shade
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0204376

Sensitivity analyses for improving sulfur management strategies in winter oilseed rape
Cited by: 4
Author(s): Emilie Poisson, Sophie Brunel‐Muguet, F. Kauffmann, Jacques Trouverie, Jean‐Christophe Avice, Alain Mollier
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2018.02533

Cervicovaginal Fungi and Bacteria Associated With Cervical Intraepithelial Neoplasia and High-Risk Human Papillomavirus Infections in a Hispanic Population
Cited by: 57
Author(s): Filipa Godoy-Vitorino, Josefina Romaguera, Chunyu Zhao, Daniela Vargas-Robles, Gilmary Ortiz-Morales, Frances Vázquez-Sánchez, María M. Sánchez-Vázquez, Manuel de la Garza-Casillas, Magaly Martínez‐Ferrer, James R. White, Kyle Bittinger, Maria Gloria Domínguez-Bello, Martin J. Blaser
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2020.574361

Multistability and Reversibility of Aerobic Granular Sludge Microbial Communities Upon Changes From Simple to Complex Synthetic Wastewater and Back
Cited by: 16
Author(s): Aline Sondra Adler, Christof Holliger
Software Mentions: 6
Published: almost 4 years ago

10.1128/mBio.00971-19

Evolution of Superinfection Immunity in Cluster A Mycobacteriophages
Cited by: 48
Author(s): Travis N. Mavrich, Graham F. Hatfull
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0242675

Diversity of bacteria populations associated with different thallus regions of the brown alga Laminaria digitata
Cited by: 20
Author(s): Maureen W. Ihua, Jamie A. FitzGerald, Freddy Guihéneuf, Stephen A. Jackson, Marcus J. Claesson, Dagmar B. Stengel, Alan D. W. Dobson
Software Mentions: 6
Published: almost 4 years ago

10.1186/s13062-017-0193-2

On the global CRISPR array behavior in class I systems
Cited by: 11
Author(s): Alice Toms, Rodolphe Barrangou
Software Mentions: 6
Published: about 7 years ago

10.3390/biomedicines9020124

Conventional, High-Resolution and Imaging Flow Cytometry: Benchmarking Performance in Characterisation of Extracellular Vesicles
Cited by: 18
Author(s): Jaco Botha, Haley R. Pugsley, Aase Handberg
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0231690

Limited evidence for common interannual trends in Baltic Sea summer phytoplankton biomass
Cited by: 8
Author(s): Jennifer R. Griffiths, Sirpa Lehtinen, Sanna Suikkanen, Monika Winder
Software Mentions: 6
Published: over 4 years ago

10.3390/biomedicines9020206

Zoom in on Antibody Aggregates: A Potential Pitfall in the Search of Rare EV Populations
Cited by: 1
Author(s): Rikke Wehner Rasmussen, Jaco Botha, Frederik Prip, Mathilde Sanden, Mads Nielsen, Aase Handberg
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-021-90735-0

Distinct microbial community along the chronic oil pollution continuum of the Persian Gulf converge with oil spill accidents
Cited by: 16
Author(s): Maryam Rezaei Somee, Seyed Mohammad Mehdi Dastgheib, Mahmoud Shavandi, Leila Ghanbari Maman, Kaveh Kavousi, Mohammad Ali Amoozegar, Maliheh Mehrshad
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0178511

Enhancing fish Underwater Visual Census to move forward assessment of fish assemblages: An application in three Mediterranean Marine Protected Areas
Cited by: 31
Author(s): Giulia Prato, Pierre Thiriet, Antonio Franco, Patrice Francour
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-021-86100-w

Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental calculus
Cited by: 11
Author(s): Andrew G. Farrer, Sterling L. Wright, Emily Skelly, Raphael Eisenhofer, Keith Dobney, Laura S. Weyrich
Software Mentions: 6
Published: over 3 years ago

10.3390/ijms22115981

Longitudinal Changes in Diet Cause Repeatable and Largely Reversible Shifts in Gut Microbial Communities of Laboratory Mice and Are Observed across Segments of the Entire Intestinal Tract
Cited by: 8
Author(s): Adrian Low, Melissa Soh, Sou Miyake, Vanessa Zhi Jie Aw, Jian Feng, Adeline Wong, Henning Seedorf
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-020-79736-7

BIRC5 is a prognostic biomarker associated with tumor immune cell infiltration
Cited by: 37
Author(s): Lijun Xu, Wenpeng Yu, Han Xiao, Lin Kang
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-020-69268-5

Molecular malaria surveillance using a novel protocol for extraction and analysis of nucleic acids retained on used rapid diagnostic tests
Cited by: 8
Author(s): Etienne A Guirou, Tobias Schindler, Salome Hosch, Olivier Trésor Donfack, Charlene Aya Yoboue, Silvan Krähenbühl, Anna Deal, Glenda Cosi, Linda Gondwe, Grace Mwangoka, Heavenlight Masuki, Nahya Salim, Maxmillian Mpina, Said Jongo, Salim Abdulla, Stephen L. Hoffman, Bonifacio Manguire Nlavo, Carl D. Maas, Carlos Cortes Falla, Wonder P. Phiri, Guillermo A. García, Marcel Tanner, Claudia Daubenberger
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-020-66369-z

High Oscillospira abundance indicates constipation and low BMI in the Guangdong Gut Microbiome Project
Cited by: 66
Author(s): Yi-ran Chen, Huimin Zheng, Guoxia Zhang, Fang-lan Chen, Lidan Chen, Zhaoying Yang
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0109760

Copy Number Loss of the Interferon Gene Cluster in Melanomas Is Linked to Reduced T Cell Infiltrate and Poor Patient Prognosis
Cited by: 164
Author(s): Peter S. Linsley, Cate Speake, Elizabeth Whalen, Damien Chaussabel
Software Mentions: 6
Published: about 10 years ago

10.1186/s40168-017-0314-2

A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis
Cited by: 61
Author(s): Fiona Whelan, Michael G. Surette
Software Mentions: 6
Published: over 7 years ago

10.1038/s41426-018-0118-x

Comparative genomics of Campylobacter concisus: Analysis of clinical strains reveals genome diversity and pathogenic potential
Cited by: 22
Author(s): Matthew Gemmell, Susan H. Berry, Indrani Mukhopadhya, Richard Hansen, Hans Linde Nielsen, Mona Bajaj-Elliott, Henrik Nielsen, Georgina L. Hold
Software Mentions: 6
Published: over 6 years ago

10.3390/microorganisms9010076

Vibrio Colonization Is Highly Dynamic in Early Microplastic-Associated Biofilms as Well as on Field-Collected Microplastics
Cited by: 44
Author(s): Katharina Kesy, Matthias Labrenz, Brittan S. Scales, Bernd Kreikemeyer, Sonja Oberbeckmann
Software Mentions: 6
Published: almost 4 years ago

10.7554/eLife.56279

Emergence and diversification of a highly invasive chestnut pathogen lineage across southeastern Europe
Cited by: 21
Author(s): Lea Stauber, Thomas Badet, Alice Feurtey, Simone Prospero, Daniel Croll
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0224123

Clonal diversity and spatial genetic structure in the long-lived herb, Prairie trillium
Cited by: 2
Author(s): Jennifer R. Mandel, C. Kendall Major, Randall J. Bayer, James E. Moore
Software Mentions: 6
Published: about 5 years ago

10.1186/s12864-021-07526-0

Transcriptional profiling of identified neurons in leech
Cited by: 6
Author(s): Elizabeth A. C. Heath‐Heckman, Shinja Yoo, Christopher J. Winchell, Maurizio Pellegrino, James D. Angstadt, Veronica B. Lammardo, Diana M. Bautista, Francisco F. De‐Miguel, David A. Weisblat
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-019-51452-x

NADH dehydrogenases Nuo and Nqr1 contribute to extracellular electron transfer by Shewanella oneidensis MR-1 in bioelectrochemical systems
Cited by: 15
Author(s): Cody S. Madsen, Michaela A. TerAvest
Software Mentions: 6
Published: about 5 years ago

10.1002/ece3.3213

Pollination by the locally endangered island flying fox (Pteropus hypomelanus) enhances fruit production of the economically important durian (Durio zibethinus)
Cited by: 65
Author(s): Sheema Abdul Aziz, Gopalasamy Reuben Clements, Kim R. McConkey, Tuanjit Sritongchuay, Saifful Pathil, Muhammad Nur Hafizi Abu Yazid, Ahimsa Campos‐Arceiz, Pierre‐Michel Forget, Sara Bumrungsri
Software Mentions: 6
Published: about 7 years ago

10.1128/mBio.00093-17

Comparison of Standard Culture-Based Method to Culture-Independent Method for Evaluation of Hygiene Effects on the Hand Microbiome
Cited by: 45
Author(s): Carrie A. Zapka, Jonathan W. Leff, Jessica B. Henley, J. Tittl, Elizabeth De Nardo, Melissa S. Butler, Russell K. Griggs, Noah Fierer, Sarah L. Edmonds-Wilson
Software Mentions: 5
Published: over 7 years ago

10.1038/s41420-021-00557-2

Identification of the pyroptosis‑related prognostic gene signature and the associated regulation axis in lung adenocarcinoma
Cited by: 119
Author(s): Wanli Lin, Ying Chen, Bomeng Wu, Zuwei Li
Software Mentions: 5
Published: over 3 years ago

10.3389/fcimb.2021.714162

Characterization of the Oral and Esophageal Microbiota in Esophageal Precancerous Lesions and Squamous Cell Carcinoma
Cited by: 12
Author(s): Zhengqi Li, Lizhou Dou, Yueming Zhang, Shasha He, Di Zhao, Cui Hao, Gonghua Song, Wei Zhang, Yong Liu, Guiqi Wang
Software Mentions: 5
Published: about 3 years ago

10.1038/s41419-020-02971-3

CDK9 activity is critical for maintaining MDM4 overexpression in tumor cells
Cited by: 20
Author(s): Monika Štětková, Kateřina Growková, Petr Fojtík, Barbora Valčíková, Veronika Palušová, Amandine Verlande, Radek Jorda, Vladimı́r Kryštof, Václav Hejret, Panagiotis Alexiou, Vladimír Rotrekl, Stjepan Uldrijan
Software Mentions: 5
Published: about 4 years ago

10.3390/cancers12061531

Mass Spectrometric Comparison of HPV-Positive and HPV-Negative Oropharyngeal Cancer
Cited by: 6
Author(s): M. Wurlitzer, Nikolaus Möckelmann, Malte Kriegs, Maren Vens, Maryam Omidi, Konstantin Hoffer, Clara von Bargen, Christina Möller‐Koop, Melanie Witt, Conrad Droste, Agnes Oetting, Hannes Petersen, Chia‐Jung Busch, Adrian Münscher, Hartmut Schlüter, Till S. Clauditz, Thorsten Rieckmann
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0153160

SWATH2stats: An R/Bioconductor Package to Process and Convert Quantitative SWATH-MS Proteomics Data for Downstream Analysis Tools
Cited by: 39
Author(s): Peter Blattmann, Moritz Heusel, Ruedi Aebersold
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0106381

Diagnostic Accuracy of Computer-Aided Detection of Pulmonary Tuberculosis in Chest Radiographs: A Validation Study from Sub-Saharan Africa
Cited by: 71
Author(s): Marianne Breuninger, Bram van Ginneken, Rick H. H. M. Philipsen, Francis Mhimbira, Jerry Hella, Fred Lwilla, Jan van den Hombergh, Amanda Ross, Levan Jugheli, Dirk Wagner, Klaus Reither
Software Mentions: 5
Published: about 10 years ago

10.3390/nu8100660

Effect of Bifidobacterium breve on the Intestinal Microbiota of Coeliac Children on a Gluten Free Diet: A Pilot Study
Cited by: 92
Author(s): Andrea Quagliariello, Irene Aloisio, Nicole Bozzi Cionci, Donata Luiselli, Giuseppe D’Auria, Llúcia Martínez-Priego, David Pérez-Villarroya, Tomaž Langerholc, Maša Primec, Dušanka Mičetić-Turk, Diana Di Gioia
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0138726

The Relationship of Immune Cell Signatures to Patient Survival Varies within and between Tumor Types
Cited by: 24
Author(s): Peter S. Linsley, Damien Chaussabel, Cate Speake
Software Mentions: 5
Published: about 9 years ago

10.3389/fmicb.2019.02798

The Compositionally Distinct Cyanobacterial Biocrusts From Brazilian Savanna and Their Environmental Drivers of Community Diversity
Cited by: 22
Author(s): Nathali Machado de Lima, Vanessa Moreira Câmara Fernandes, Daniel Roush, Sergio Velasco Ayuso, Janaína Rigonato, Ferrán García-Pichel, Luis Henrique Zanini Branco
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2020.587558

Tibetan Sheep Adapt to Plant Phenology in Alpine Meadows by Changing Rumen Microbial Community Structure and Function
Cited by: 18
Author(s): Hongjin Liu, Linyong Hu, Xueping Han, Na Zhao, Tianwei Xu, Li Ma, Xungang Wang, Xiaoling Zhang, Shenghong Kang, Xinquan Zhao, Shixiao Xu
Software Mentions: 5
Published: about 4 years ago

10.3389/fmicb.2020.01212

Diverse Microbial Composition of Sourdoughs From Different Origins
Cited by: 50
Author(s): Andrea Comasio, Marko Verce, Simon Van Kerrebroeck, Luc De Vuyst
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2021.569020

Distribution of Hydrogen-Producing Bacteria in Tibetan Hot Springs, China
Cited by: 3
Author(s): Li Ma, Geng Wu, Jian Yang, Liuqin Huang, Dorji Phurbu, Wenjun Li, Hongchen Jiang
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2019.01665

Spatial Environmental Heterogeneity Determines Young Biofilm Assemblages on Microplastics in Baltic Sea Mesocosms
Cited by: 97
Author(s): Katharina Kesy, Sonja Oberbeckmann, Bernd Kreikemeyer, Matthias Labrenz
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.690251

Low Global Diversity of Candidatus Microthrix, a Troublesome Filamentous Organism in Full-Scale WWTPs
Cited by: 16
Author(s): Marta Nierychlo, Caitlin M. Singleton, Francesca Petriglieri, Lisette Thomsen, Jette Fischer Petersen, Miriam Peces, Zivile Kondrotaite, Morten Simonsen Dueholm, Per Halkjær Nielsen
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2020.01452

Association of Maternal Factors and HIV Infection With Innate Cytokine Responses of Delivering Mothers and Newborns in Mozambique
Cited by: 6
Author(s): Gemma Moncunill, Carlota Dobaño, Raquel González, Kinga K. Smolen, Maria Nélia Manaca, Reyes Balcells, Chenjerai Jairoce, Pau Cisteró, Anifa Valá, Esperança Sevene, Maria Rosario, John J. Aponte, Eusébio Macete, Clara Menéndez, Tobias R. Kollmann, Alfredo Mayor
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0237118

Modulation of the intestinal microbiota of broilers supplemented with monensin or functional oils in response to challenge by Eimeria spp.
Cited by: 14
Author(s): Alexandre Maciel Vieira, Tatiany Aparecida Teixeira Soratto, Kátia Maria Cardinal, Glauber Wagner, Lucélia Hauptli, André Luís Ferreira Lima, Fabiano Dahlke, Diego Peres Netto, Priscila de Oliveira Moraes, Andréa Machado Leal Ribeiro
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0246297

Rhabdomyolysis related to acute recreational drug toxicity—A Euro-DEN study
Cited by: 9
Author(s): W. James Waldman, Piotr Maciej Kabata, Alison Dines, David M. Wood, Chris Yates, Fridtjof Heyerdahl, Knut Erik Hovda, Isabelle Giraudon, Jacek Sein Anand
Software Mentions: 5
Published: over 3 years ago

10.3389/fpls.2019.01126

Haplotypes at the Phg-2 Locus Are Determining Pathotype-Specificity of Angular Leaf Spot Resistance in Common Bean
Cited by: 13
Author(s): Michelle M. Nay, Clare Mugisha Mukankusi, Bruno Studer, Bodo Raatz
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pgen.1008156

Transcriptomic basis and evolution of the ant nurse-larval social interactome
Cited by: 14
Author(s): Michael Warner, Alexander S. Mikheyev, Timothy A. Linksvayer
Software Mentions: 5
Published: over 5 years ago

10.3389/fvets.2020.563140

Real-Time Standard Analysis of Disease Investigation (SADI)—A Toolbox Approach to Inform Disease Outbreak Response
Cited by: 0
Author(s): Paul Bingham, Masako Wada, Mary van Andel, Andrew McFadden, R.L. Sanson, Mark Stevenson
Software Mentions: 5
Published: about 4 years ago

10.7717/peerj.1900

A comparison of species composition and community assemblage of secondary forests between the birch and pine-oak belts in the mid-altitude zone of the Qinling Mountains, China
Cited by: 13
Author(s): Zongzheng Chai, Dexiang Wang
Software Mentions: 5
Published: over 8 years ago

10.1093/gigascience/giaa125

Localized effect of treated wastewater effluent on the resistome of an urban watershed
Cited by: 17
Author(s): Christopher N Thornton, Windy Tanner, James VanDerslice, William J. Brazelton
Software Mentions: 5
Published: about 4 years ago

10.1128/AEM.03074-15

Novel Rhizosphere Soil Alleles for the Enzyme 1-Aminocyclopropane-1-Carboxylate Deaminase Queried for Function with an In Vivo Competition Assay
Cited by: 13
Author(s): Zhao Jin, Sara C. Di Rienzi, Anders Janzon, Jeff J. Werner, Largus T. Angenent, Jeffrey L. Dangl, Douglas M. Fowler, Ruth E. Ley
Software Mentions: 5
Published: almost 9 years ago

10.3390/pathogens10010041

Extensive Phylogenetic Analysis of Piscine Orthoreovirus Genomic Sequences Shows the Robustness of Subgenotype Classification
Cited by: 5
Author(s): Marcos Godoy, Daniel A. Medina, Rudy Suárez, Sandro L. Valenzuela, Jaime Romero, Molly J. T. Kibenge, Yingwei Wang, Frederick S. B. Kibenge
Software Mentions: 5
Published: almost 4 years ago

10.1016/j.wroa.2019.100033

Organic substrate diffusibility governs microbial community composition, nutrient removal performance and kinetics of granulation of aerobic granular sludge
Cited by: 74
Author(s): Manuel Layer, Aline Sondra Adler, Eva Reynaert, Antonio Hernández, Marco Pagni, Eberhard Morgenroth, Christof Holliger, Nicolas Derlon
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms7010004

The Microbial Communities of Leaves and Roots Associated with Turtle Grass (Thalassia testudinum) and Manatee Grass (Syringodium filliforme) are Distinct from Seawater and Sediment Communities, but Are Similar between Species and Sampling Sites
Cited by: 41
Author(s): Kelly Ugarelli, Peeter Laas, Ulrich Stingl
Software Mentions: 5
Published: almost 6 years ago

10.3390/jpm11010011

Pharmacogenomics at the Point of Care: A Community Pharmacy Project in British Columbia
Cited by: 12
Author(s): Samantha Breaux, Francis Arthur Derek Desrosiers, Mauricio Neira, Sunita Sinha, Corey Nislow
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-020-69111-x

Changes in the vaginal microbiota across a gradient of urbanization
Cited by: 21
Author(s): Daniela Vargas-Robles, Natalia Morales, Iveth Rodríguez, Tahidid Nieves, Filipa Godoy-Vitorino, Luis David Alcaraz, María-Eglée Pérez, Jacques Ravel, Larry J. Forney, Maria Gloria Domínguez-Bello
Software Mentions: 5
Published: over 4 years ago

10.1186/s40168-020-00919-5

Viral ecogenomics across the Porifera
Cited by: 19
Author(s): Cecília Pascelli, Patrick W. Laffy, Emmanuelle S. Botté, Marija Kuprešanin, Thomas Rattei, Miguel Lurgi, Timothy Ravasi, Nicole S. Webster
Software Mentions: 5
Published: about 4 years ago

10.1016/j.lmot.2018.07.003

A re-examination of responding on ratio and regulated-probability interval schedules
Cited by: 6
Author(s): Omar David Pérez, Michael R. F. Aitken, Amy Milton, Anthony Dickinson
Software Mentions: 5
Published: about 6 years ago

10.1186/s12935-019-0731-3

Potential new biomarkers for endometrial cancer
Cited by: 37
Author(s): Michelle H. Townsend, Zac E. Ence, Abigail M. Felsted, Alyssa Parker, Stephen R. Piccolo, Richard A. Robison, Kim L. O’Neill
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-021-90145-2

An in-depth analysis of the mitochondrial phylogenetic landscape of Cambodia
Cited by: 5
Author(s): Anita Kloss‐Brandstätter, Monika Summerer, David Horst, Basil A. Horst, Gertraud Streiter, Julia Raschenberger, Florian Kronenberg, Torpong Sanguansermsri, Jürgen Horst, Hansi Weißensteiner
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-90380-7

Gut microbiota composition in health-care facility-and community-onset diarrheic patients with Clostridioides difficile infection
Cited by: 6
Author(s): Giovanny Herrera, Laura Vega, Manuel A. Patarroyo, Juan David Ramírez, Marina Muñoz
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-98549-w

Effect of functional oils or probiotics on performance and microbiota profile of newly weaned piglets
Cited by: 4
Author(s): Alexandre Maciel Vieira, Amanda Pires Sessin, Tatiany Aparecida Teixeira Soratto, Paula Gabriela da Silva Pires, Kátia Maria Cardinal, Glauber Wagner, Lucélia Hauptli, André Luís Ferreira Lima, Fabiano Dahlke, Diego Peres Netto, Priscila de Oliveira Moraes
Software Mentions: 5
Published: about 3 years ago

Projects: cran: reshape2

Papers Mentioning reshape2 421