cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1525/collabra.116

Individual Importance Weighting of Domain Satisfaction Ratings does Not Increase Validity
Cited by: 21
Author(s): Julia M. Rohrer, Stefan C. Schmukle
Software Mentions: 7
Published: almost 7 years ago

10.1098/rsob.200290

Planar cell polarity in the larval epidermis of Drosophila and the role of microtubules
Cited by: 6
Author(s): Stefano Pietra, KangBo Ng, Peter A. Lawrence, José Casal
Software Mentions: 7
Published: almost 4 years ago

10.3389/fimmu.2021.645320

Effects of Hypoxia in Intestinal Tumors on Immune Cell Behavior in the Tumor Microenvironment
Cited by: 14
Author(s): Luping Zhang, Shaokun Wang, Yachen Wang, Wenjie Zhao, Yingli Zhang, Nan Zhang, Hong Xu
Software Mentions: 7
Published: over 3 years ago

10.3390/microorganisms8050677

The Bacterial Gut Microbiota of Adult Patients Infected, Colonized or Noncolonized by Clostridioides difficile
Cited by: 21
Author(s): Monique J. T. Crobach, Quinten R Ducarmon, Elisabeth M. Terveer, Céline Harmanus, Ingrid M J G Sanders, Kees Verduin, Ed J. Kuijper, Romy D. Zwittink
Software Mentions: 7
Published: over 4 years ago

10.3389/fmolb.2021.656145

Identification and Exploration of Novel Macrophage M2-Related Biomarkers and Potential Therapeutic Agents in Endometriosis
Cited by: 10
Author(s): Zhongqi Cui, Ramesh Singh Bhandari, Lei Qin, Mingzhi Lu, Lei Zhang, Mengmei Zhang, Fenyong Sun, Lijin Feng, Shasha Zhao
Software Mentions: 7
Published: over 3 years ago

10.1515/tnsci-2021-0002

IKBIP is a novel EMT-related biomarker and predicts poor survival in glioma
Cited by: 9
Author(s): Ying Yang, Jin Wang, Shi‐Hai Xu, Wen Lv, Fei Shi, Aijun Shan
Software Mentions: 7
Published: almost 4 years ago

10.1038/s41598-020-75723-0

Veteran trees are a source of natural enemies
Cited by: 9
Author(s): Ross Wetherbee, Tone Birkemoe, Anne Sverdrup‐Thygeson
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.ppat.1009537

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor
Cited by: 17
Author(s): Jay Vornhagen, Christine M. Bassis, S. Ramakrishnan, Robert Hein, Sophia Mason, Yehudit Bergman, Nicole Sunshine, Yunfan Fan, Caitlyn L. Holmes, Winston Timp, Michael C. Schatz, Vincent B. Young, Patricia J. Simner, Michael A. Bachman
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0204076

The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly
Cited by: 62
Author(s): Kris A. Christensen, Eric B. Rondeau, David R. Minkley, Jong S. Leong, Cameron M. Nugent, Roy G. Danzmann, Moira M. Ferguson, Agnieszka Stadnik, Robert H. Devlin, Robin Muzzerall, Michael G. Edwards, William S. Davidson, Ben F. Koop
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.ppat.1008864

Using Plasmodium knowlesi as a model for screening Plasmodium vivax blood-stage malaria vaccine targets reveals new candidates
Cited by: 14
Author(s): Duncan Ndungu Ndegwa, Prasun Kundu, Jessica B. Hostetler, Alejandro Marín-Menéndez, Theo Sanderson, Kioko Mwikali, Lisa Verzier, Rachael Coyle, Sophie H. Adjalley, Julian C. Rayner
Software Mentions: 7
Published: over 3 years ago

10.1038/s41398-020-01176-8

The placenta protects the fetal circulation from anxiety-driven elevations in maternal serum levels of brain-derived neurotrophic factor
Cited by: 7
Author(s): Hayley Dingsdale, Xinsheng Nan, Samantha M. Garay, Annett Mueller, Lorna Sumption, Pedro Chacón-Fernández, Isabel Martinez‐Garay, Cédric Ghevaert, Yves‐Alain Barde, John Roshan
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pone.0222977

No relationship between fornix and cingulum degradation and within-network decreases in functional connectivity in prodromal Alzheimer’s disease
Cited by: 10
Author(s): Therese Gilligan, Francesca Sibilia, Dervla Farrell, Declan Lyons, Sean Kennelly, Arun L.W. Bokde
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0242486

Altered feeding behavior and immune competence in paper wasps: A case of parasite manipulation?
Cited by: 3
Author(s): L. Beani, Marta Mariotti Lippi, Nadia Mulinacci, Fabio Manfredini, Lorenzo Cecchi, C. Giuliani, Corrado Tani, Niccolò Meriggi, Duccio Cavalieri, Federico Cappa
Software Mentions: 7
Published: almost 4 years ago

10.1155/2021/5538643

A Network Pharmacology and Molecular Docking Strategy to Explore Potential Targets and Mechanisms Underlying the Effect of Curcumin on Osteonecrosis of the Femoral Head in Systemic Lupus Erythematosus
Cited by: 4
Author(s): Pan Kang, Zhigen Wu, Yue Zhong, Zihao Wang, Chi Zhou, Shaochuan Huo, Hai Bin Guo, Songtao Li, Kun Xu, Ling-yun Liu, Shuai Chen, Hong-Yu Tang, Haibin Wang
Software Mentions: 7
Published: about 3 years ago

10.1016/j.psj.2021.101300

The relationship between gait and automated recordings of individual broiler activity levels
Cited by: 7
Author(s): M. van der Sluis, E.D. Ellen, B. de Klerk, T.B. Rodenburg, Y. de Haas
Software Mentions: 7
Published: about 3 years ago

10.5888/pcd17.190286

Visualizing 50 Years of Cancer Mortality Rates Across the US at Multiple Geographic Levels Using a Synchronized Map and Graph Animation
Cited by: 0
Author(s): Isaac H. Michaels, Sylvia Pirani, Alvaro Carrascal
Software Mentions: 7
Published: over 4 years ago

10.3389/fmolb.2021.705008

CUX1 Facilitates the Development of Oncogenic Properties Via Activating Wnt/β-Catenin Signaling Pathway in Glioma
Cited by: 2
Author(s): Fang Fěng, Zongqing Zhao, Yunfei Zhou, Yalin Cheng, Xiujie Wu, Xueyuan Heng
Software Mentions: 7
Published: over 3 years ago

10.1186/s13073-019-0695-x

FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures
Cited by: 7
Author(s): Hyunbin Kim, Andy Jinseok Lee, Jongkeun Lee, Hyonho Chun, Young Seok Ju, Dong Ho Hong
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0239081

Diazotrophic bacteria from maize exhibit multifaceted plant growth promotion traits in multiple hosts
Cited by: 11
Author(s): Shawn M. Higdon, Tania Pozzo, Emily J. Tibbett, Colleen Chiu, Richard Jeannotte, Bart C. Weimer, A. B. Bennett
Software Mentions: 7
Published: about 4 years ago

10.1038/s41598-020-76231-x

Increased mosquito abundance and species richness in Connecticut, United States 2001–2019
Cited by: 12
Author(s): Tanya A. Petruff, Joseph R. McMillan, John J. Shepard, Theodore G. Andreadis, Philip M. Armstrong
Software Mentions: 7
Published: about 4 years ago

10.3389/fpsyg.2020.599094

Co-occurrence Patterns of Character Strengths and Measured Core Virtues in German-Speaking Adults
Cited by: 6
Author(s): Willibald Ruch, Sonja Heintz, Lisa Wagner
Software Mentions: 7
Published: about 4 years ago

10.3389/fimmu.2020.580934

Redox Regulator GLRX Is Associated With Tumor Immunity in Glioma
Cited by: 14
Author(s): Yuanhao Chang, Guanzhang Li, You Zhai, Lijie Huang, Yuemei Feng, Di Wang, Wei Zhang, Huimin Hu
Software Mentions: 7
Published: almost 4 years ago

10.7717/peerj.11894

Identification of a circRNA-miRNA-mRNA regulatory network for exploring novel therapeutic options for glioma
Cited by: 4
Author(s): Yi He, Yihong Chen, Yuxin Tong, Wenyong Long, Qing Liu
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-017-15712-y

Genome-wide analyses of long noncoding RNA expression profiles in lung adenocarcinoma
Cited by: 20
Author(s): Peng Zhang, Jun Wang, Bin Shan, Fulai Yuan, Bin Li, Yeping Dong, Wei Peng, Weisong Shi, Yuanda Cheng, Yang Gao, Chunfang Zhang, Chaojun Duan
Software Mentions: 7
Published: about 7 years ago

10.1038/s41598-020-76364-z

Genetic evidence supports three previously described species of greater glider, Petauroides volans, P. minor, and P. armillatus
Cited by: 21
Author(s): Denise C. McGregor, Amanda Padovan, Arthur Georges, Andrew K. Krockenberger, Hwan Jin Yoon, Kara N. Youngentob
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0231773

Perceived socio-economic impacts of the marbled crayfish invasion in Madagascar
Cited by: 19
Author(s): Ranja Andriantsoa, Julia P. G. Jones, Vlad Achimescu, Heriniaina Randrianarison, Miary Raselimanana, Manjary Andriatsitohaina, Jeanne Rasamy, Frank Lyko
Software Mentions: 7
Published: over 4 years ago

10.7554/eLife.69549

A precisely adjustable, variation-suppressed eukaryotic transcriptional controller to enable genetic discovery
Cited by: 15
Author(s): Aslı Azizoğlu, Roger Brent, Fabian Rudolf
Software Mentions: 7
Published: over 3 years ago

10.1534/g3.119.0011

Chromosome-Wide Evolution and Sex Determination in the Three-Sexed Nematode Auanema rhodensis
Cited by: 31
Author(s): Sophie Tandonnet, Georgios Koutsovoulos, Sally Adams, Delphine Cloarec, Manish Parihar, Mark Blaxter, André Pires-daSilva
Software Mentions: 7
Published: over 5 years ago

10.18632/aging.102506

Reactive oxygen species metabolism-based prediction model and drug for patients with recurrent glioblastoma
Cited by: 7
Author(s): Nian Tan, Jianwei Liu, Ping Li, Zhaohao Sun, Jianming Pan, Wei Zhao
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12859-017-1619-7

Meta-analysis approach as a gene selection method in class prediction: does it improve model performance? A case study in acute myeloid leukemia
Cited by: 4
Author(s): Putri W. Novianti, Victor L. Jong, Kit C. B. Roes, Marinus J.C. Eijkemans
Software Mentions: 7
Published: over 7 years ago

10.3389/fmicb.2018.02520

Reduced Chlorine in Drinking Water Distribution Systems Impacts Bacterial Biodiversity in Biofilms
Cited by: 63
Author(s): Claire Bertelli, Sophie Courtois, Marta Rosikiewicz, P. Piriou, Sébastien Aeby, Robert Salais, Jean-François Loret, Gilbert Greub
Software Mentions: 7
Published: about 6 years ago

10.3390/ani11061835

An Investigation into the Influence of Different Types of Nesting Materials upon the Welfare of Captive Chimpanzees (Pan troglodytes)
Cited by: 2
Author(s): N. Anderson, Bala Amarasekaran, David Riba
Software Mentions: 7
Published: over 3 years ago

10.1186/s12894-021-00795-7

Comprehensive analysis of tumour mutational burden and its clinical significance in prostate cancer
Cited by: 14
Author(s): Limin Wang, Shucheng Pan, Binbin Zhu, Zhenliang Yu, Wei Wang
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12859-019-2990-3

Analysis of networks of host proteins in the early time points following HIV transduction
Cited by: 8
Author(s): Éva Csősz, Ferenc Tóth, Mohamed Mahdi, George Tsaprailis, Miklós Emri, József Tözsér
Software Mentions: 7
Published: over 5 years ago

10.1186/s12859-020-03945-0

mixIndependR: a R package for statistical independence testing of loci in database of multi-locus genotypes
Cited by: 1
Author(s): Bing Song, August E. Woerner, John V. Planz
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pgen.1008375

DNA variants affecting the expression of numerous genes in trans have diverse mechanisms of action and evolutionary histories
Cited by: 29
Author(s): Sheila Lutz, Christian Brion, Margaret Kliebhan, Frank W. Albert
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0245626

Diversity of microbial communities and soil nutrients in sugarcane rhizosphere soil under water soluble fertilizer
Cited by: 20
Author(s): Huan Niu, Ziqin Pang, Nyumah Fallah, Yongmei Zhou, Caifang Zhang, Chaohua Hu, Wenxiong Lin, Zhaonian Yuan
Software Mentions: 7
Published: almost 4 years ago

10.3389/fgene.2021.737656

Integrated Analysis of the Expression Characteristics, Prognostic Value, and Immune Characteristics of PPARG in Breast Cancer
Cited by: 5
Author(s): Jianbin Wu, Mingmin Luo, Zhuangwei Chen, Lei Li, Xiaoxi Huang
Software Mentions: 7
Published: about 3 years ago

10.3389/fmicb.2021.601901

The Genomic Capabilities of Microbial Communities Track Seasonal Variation in Environmental Conditions of Arctic Lagoons
Cited by: 0
Author(s): Kristina Baker, Colleen T. E. Kellogg, J. W. McClelland, Kenneth H. Dunton, Byron C. Crump
Software Mentions: 7
Published: almost 4 years ago

10.3389/fpls.2020.572112

Expression of Putative Defense Responses in Cannabis Primed by Pseudomonas and/or Bacillus Strains and Infected by Botrytis cinerea
Cited by: 16
Author(s): Carole Balthazar, Gabrielle Cantin, Amy Novinscak, David L. Joly, Martin Filion
Software Mentions: 7
Published: about 4 years ago

10.3389/fmicb.2018.02404

Bleaching-Associated Changes in the Microbiome of Large Benthic Foraminifera of the Great Barrier Reef, Australia
Cited by: 11
Author(s): Martina Prazeres
Software Mentions: 7
Published: about 6 years ago

10.3389/fmicb.2021.662159

Effect of Fecal Microbiota Transplantation Combined With Mediterranean Diet on Insulin Sensitivity in Subjects With Metabolic Syndrome
Cited by: 20
Author(s): Annefleur M. Koopen, Eduardo L. Almeida, Ilias Attaye, Julia J. Witjes, Elena Rampanelli, Soumia Majait, E. Marleen Kemper, Johannes H.M. Levels, Alinda W.M. Schimmel, Hilde Herrema, Torsten P. M. Scheithauer, Werner Frei, Lars Ove Dragsted, Bolette Hartmann, Jens J. Holst, Paul W. O’Toole, Albert K. Groen, Max Nieuwdorp
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-020-60546-w

Inadequate socialisation, inactivity, and urban living environment are associated with social fearfulness in pet dogs
Cited by: 45
Author(s): Jenni Puurunen, Emma Hakanen, Milla Salonen, Salla Mikkola, Sini Sulkama, Cynthia Gobbi Alves Araújo, Hannes Lohi
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0242020

Comparing the success of active and passive restoration in a tropical cloud forest landscape: A multi-taxa fauna approach
Cited by: 20
Author(s): Juan Manuel Díaz-García, Fabiola López‐Barrera, Eduardo Pineda, Tarin Toledo‐Aceves, Ellen Andresen
Software Mentions: 7
Published: about 4 years ago

10.3390/jcm9082426

Sex-Specific Prognostic Implications in Dilated Cardiomyopathy After Left Ventricular Reverse Remodeling
Cited by: 9
Author(s): Antonio Cannatà, Paolo Manca, Vincenzo Nuzzi, Caterina Gregorio, Jessica Artico, Piero Gentile, Carola Pio Loco, Federica Ramani, Giulia Barbati, Marco Merlo, Gianfranco Sinagra
Software Mentions: 7
Published: over 4 years ago

10.3390/cancers13061296

Candidate Markers of Olaparib Response from Genomic Data Analyses of Human Cancer Cell Lines
Cited by: 3
Author(s): Setor Amuzu, Eurı́dice Carmona, Anne-Marie Mes-Masson, Celia M.T. Greenwood, Patricia N. Tonin, Jiannis Ragoussis
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0243672

Characterisation and chemometric evaluation of 17 elements in ten seaweed species from Greenland
Cited by: 11
Author(s): Katharina Kreissig, Lisbeth Truelstrup Hansen, Pernille Erland Jensen, Susse Wegeberg, Ole Geertz‐Hansen, Jens Jørgen Sloth
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pntd.0005729

Dengue prediction by the web: Tweets are a useful tool for estimating and forecasting Dengue at country and city level
Cited by: 70
Author(s): Cecilia Marques-Toledo, Carolin Marlen Degener, Livia Vinhal, Giovanini Evelim Coelho, Wagner Meira, Cláudia Torres Codeço, Mauro Martins Teixeira
Software Mentions: 7
Published: over 7 years ago

10.1186/s12859-017-1942-z

A modified GC-specific MAKER gene annotation method reveals improved and novel gene predictions of high and low GC content in Oryza sativa
Cited by: 17
Author(s): Megan J. Bowman, Jane A. Pulman, Tiffany L. Liu, Kevin L. Childs
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.pntd.0006044

Exploratory metabolomics study of the experimental opisthorchiasis in a laboratory animal model (golden hamster, Mesocricetus auratus)
Cited by: 15
Author(s): Daria Kokova, Sarantos Kostidis, Judit Morello, Nataly Dementeva, Ekaterina A. Perina, V. V. Ivanov, Л. М. Огородова, А. Э. Сазонов, Irina V. Saltykova, Oleg A. Mayboroda
Software Mentions: 7
Published: about 7 years ago

10.1186/s42523-021-00130-3

Differential effects of elevated nest temperature and parasitism on the gut microbiota of wild avian hosts
Cited by: 5
Author(s): Melissa R. Ingala, Lauren Albert, Alyssa Addesso, Mackenzie J. Watkins, Sarah A. Knutie
Software Mentions: 7
Published: about 3 years ago

10.1371/journal.ppat.1005438

Transcriptome-Wide Analysis of Hepatitis B Virus-Mediated Changes to Normal Hepatocyte Gene Expression
Cited by: 42
Author(s): Jason Lamontagne, Joshua Chang Mell, Michael J. Bouchard
Software Mentions: 7
Published: almost 9 years ago

10.1186/s12859-021-04043-5

OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons
Cited by: 4
Author(s): Jakob Willforss, Valentina Siino, Fredrik Levander
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pntd.0005050

Factors Associated with the Time of Admission among Notified Dengue Fever Cases in Region VIII Philippines from 2008 to 2014
Cited by: 5
Author(s): J Abello, Julita Gil Cuesta, Boyd Roderick Cerro, Debarati Guha-Sapir
Software Mentions: 7
Published: about 8 years ago

10.1186/s13046-019-1505-4

A pre-existing population of ZEB2+ quiescent cells with stemness and mesenchymal features dictate chemoresistance in colorectal cancer
Cited by: 54
Author(s): Federica Francescangeli, Paola Contavalli, Maria Laura De Angelis, Silvia Careccia, Michele Signore, Tobias Haas, Federico Salaris, Marta Baiocchi, Alessandra Boe, Alessandro Giuliani, Olga Tcheremenskaia, Alfredo Pagliuca, Ombretta Guardiola, Gabriella Minchiotti, Lidia Colace, Antonio Ciardi, Vito D’Andrea, Filippo La Torre, Jan Paul Medema, Ruggero De Maria, Ann Zeuner
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0250170

Introducing Point-of-Interest as an alternative to Area-of-Interest for fixation duration analysis
Cited by: 7
Author(s): Nak Won Rim, Kyoung Whan Choe, Coltan Scrivner, Marc G. Berman
Software Mentions: 7
Published: over 3 years ago

10.3390/jcm10173971

A Target for Increased Mortality Risk in Critically Ill Patients: The Concept of Perpetuity
Cited by: 1
Author(s): Jarrod Mosier, Julia M. Fisher, Cameron Hypes, Edward J. Bedrick, Elizabeth Salvagio Campbell, Karen Lutrick, Charles B. Cairns
Software Mentions: 7
Published: about 3 years ago

10.3389/fmicb.2020.536978

Repetitive Sampling and Control Threshold Improve 16S rRNA Gene Sequencing Results From Produced Waters Associated With Hydraulically Fractured Shale
Cited by: 2
Author(s): Jennifer L. Shelton, Elliott P. Barnhart, Leslie F. Ruppert, Aaron M. Jubb, Madalyn S. Blondes, Christina A. DeVera
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0241691

Succinivibrionaceae is dominant family in fecal microbiota of Behçet’s Syndrome patients with uveitis
Cited by: 12
Author(s): Duygu Tecer, Feride Göğüş, Ayşe Kalkancı, Merve Erdoğan, Murat Hasanreisoğlu, Çağrı Ergin, Tarkan Karakan, Ramazan Kozan, Serhat Emre Coban, Kadir Serdar Diker
Software Mentions: 7
Published: about 4 years ago

10.1038/s41419-021-03540-y

Metabolomic analyses of COVID-19 patients unravel stage-dependent and prognostic biomarkers
Cited by: 99
Author(s): François‐Xavier Danlos, Claudia Grajeda‐Iglesias, Sylvère Durand, Allan Sauvat, Mathilde Roumier, D. Cantin, Emeline Colomba, Julien Rohmer, Fanny Pommeret, Giulia Baciarello, Christophe Willekens, Marc Vasse, Franck Griscelli, Jean-Eudes Fahrner, Anne-Gaëlle Goubet, Agathe Dubuisson, Lisa Derosa, Nitharsshini Nirmalathasan, Delphine Bredel, Séverine Mouraud, Caroline Pradon, Annabelle Stoclin, Flore Rozenberg, Jérôme Duchemin, Georges Jourdi, Syrine Ellouze, Françoise Levavasseur, Laurence Albigès, Jean‐Charles Soria, Fabrice Barlési, Éric Solary, Fabrice André, Frédéric Pène, Félix Ackerman, Luc Mouthon, Laurence Zitvogel, Aurélien Marabelle, Jean‐Marie Michot, Michaëla Fontenay, Guido Kroemer
Software Mentions: 7
Published: over 3 years ago

10.3390/jcm7120567

Systematic Review of Variations in Hyperthermic Intraperitoneal Chemotherapy (HIPEC) for Peritoneal Metastasis from Colorectal Cancer
Cited by: 57
Author(s): Can Yurttas, Giulia Hoffmann, Alexander Tolios, Sebastian P. Haen, Matthias Schwab, Ingmar Königsrainer, Alfred Königsrainer, Stefan Beckert, Markus Löffler
Software Mentions: 7
Published: almost 6 years ago

10.3390/cancers13092102

Integration of Urinary EN2 Protein & Cell-Free RNA Data in the Development of a Multivariable Risk Model for the Detection of Prostate Cancer Prior to Biopsy
Cited by: 4
Author(s): Shea P. Connell, Robert Mills, Hardev Pandha, Richard Morgan, Christopher S. Cooper, Jeremy Clark, Daniel Brewer
Software Mentions: 7
Published: over 3 years ago

10.3389/fgene.2020.577585

Development of an miRNA-Array-Based Diagnostic Signature for Periodontitis
Cited by: 11
Author(s): Sanli Jin, Jianguo Zhou, Xiaoyan Guan, Guohui Bai, Jianguo Liu, Liangwen Chen
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pgen.1008265

Genome-wide discovery of the daily transcriptome, DNA regulatory elements and transcription factor occupancy in the monarch butterfly brain
Cited by: 23
Author(s): Aldrin B. Lugena, Ying Zhang, Jérôme S. Menet, Christine Merlin
Software Mentions: 7
Published: over 5 years ago

10.3390/pathogens10010066

Contamination Sources and Transmission Routes for Campylobacter on (Mixed) Broiler Farms in Belgium, and Comparison of the Gut Microbiota of Flocks Colonized and Uncolonized with Campylobacter
Cited by: 8
Author(s): Karolien Hertogs, Annelies Haegeman, Dries Schaumont, Philippe Gelaude, Lieven De Zutter, Jeroen Dewulf, Marc Heyndrickx, Geertrui Rasschaert
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12859-021-04326-x

SNPxE: SNP-environment interaction pattern identifier
Cited by: 2
Author(s): Hui‐Yi Lin, Po‐Yu Huang, Tung-Sung Tseng, Jong Y. Park
Software Mentions: 7
Published: about 3 years ago

10.1093/jncics/pkab026

Histopathological Growth Patterns and Survival After Resection of Colorectal Liver Metastasis: An External Validation Study
Cited by: 24
Author(s): Diederik J. Höppener, Boris Galjart, Pieter M. H. Nierop, Florian E. Buisman, Eric P. van der Stok, Robert R.J. Coebergh van den Braak, Martin J. van Amerongen, Vinod P. Balachandran, William R. Jarnagin, T. Peter Kingham, Michail Doukas, Jinru Shia, Irıs D. Nagtegaal, Peter B. Vermeulen, Bas Groot Koerkamp, Dirk J. Grünhagen, Johannes H. W. de Wilt, Michael I. D’Angelica, Cornelis Verhoef
Software Mentions: 7
Published: over 3 years ago

10.1186/s42523-021-00117-0

Gut microbiome is affected by gut region but robust to host physiological changes in captive active-season ground squirrels
Cited by: 3
Author(s): Kirsten Grond, Courtney C. Kurtz, Jasmine J. Hatton, Michelle M. Sonsalla, Khrystyne N. Duddleston
Software Mentions: 7
Published: over 3 years ago

10.3389/fgene.2020.566579

Bioinformatics Analysis Discovers Microtubular Tubulin Beta 6 Class V (TUBB6) as a Potential Therapeutic Target in Glioblastoma
Cited by: 12
Author(s): Lan Jiang, Xiaolong Zhu, Hui Yang, Tianbing Chen, Kun Lv
Software Mentions: 7
Published: about 4 years ago

10.3389/pore.2021.1609825

Clinical Value of TXNDC12 Combined With IDH and 1p19q as Biomarkers for Prognosis of Glioma
Cited by: 4
Author(s): Xinzhuang Wang, Quan Yang, Nan Liu, Qilong Bian, Ming Gao, Xu Hou
Software Mentions: 7
Published: about 3 years ago

10.1098/rsos.170051

Contradicting habitat type-extinction risk relationships between living and fossil amphibians
Cited by: 3
Author(s): Melanie Tietje, Mark‐Oliver Rödel
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pgen.1009201

Genomic and transcriptomic landscape of conjunctival melanoma
Cited by: 14
Author(s): Katarina Cisarova, Marc Folcher, Ikram El Zaoui, Rosanna Pescini Gobert, Virginie G. Peter, Béryl Royer‐Bertrand, Léonidas Zografos, Ann Schalenbourg, Michaël Nicolas, Donata Rimoldi, Serge Leyvraz, Nicolò Riggi, Alexandre Moulin, Carlo Rivolta
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12859-019-2610-2

BPG: Seamless, automated and interactive visualization of scientific data
Cited by: 55
Author(s): Christine P’ng, Jeffrey Green, Lauren C. Chong, Daryl Waggott, Stephenie D. Prokopec, Mehrdad Shamsi, Francis Nguyen, Davina Mak, Felix Lam, Marco A. Albuquerque, Yaoguo Wu, Esther Jung, Maud H.W. Starmans, Michelle Chan-Seng-Yue, Cindy Q. Yao, Bianca Liang, Emilie Lalonde, Syed Haider, Nicole A. Simone, Dorota H. Sendorek, Kenneth C. Chu, Nathalie C. Moon, Natalie S. Fox, Michal R. Grzadkowski, Nicholas J. Harding, Clement Fung, Amanda R. Murdoch, Kathleen E. Houlahan, Jianxin Wang, David R. Garcia, Richard de Borja, Ren Sun, Xihui Lin, Gregory M. Chen, Aileen Lu, Yu-Jia Shiah, Amin Zia, Ryan Kearns, Paul C. Boutros
Software Mentions: 7
Published: almost 6 years ago

10.1098/rsos.200431

Make or break it: boundary conditions for integrating multiple elements in episodic memory
Cited by: 6
Author(s): Emma James, Gabrielle Ong, Lisa Henderson, Aidan J. Horner
Software Mentions: 7
Published: about 4 years ago

10.18632/aging.101912

The widespread increase in inter-individual variability of gene expression in the human brain with age
Cited by: 19
Author(s): Veronika R. Kedlian, Handan Melike Dönertaş, Janet M. Thornton
Software Mentions: 7
Published: over 5 years ago

10.1186/s12284-019-0305-y

Deciphering Genetics Underlying Stable Anaerobic Germination in Rice: Phenotyping, QTL Identification, and Interaction Analysis
Cited by: 19
Author(s): S. Ghosal, Carlos Casal, Fergie Ann Quilloy, Endang M. Septiningsih, Merlyn S. Mendioro, Shalabh Dixit
Software Mentions: 7
Published: over 5 years ago

10.18632/aging.101356

A hypothesis-driven approach identifies CDK4 and CDK6 inhibitors as candidate drugs for treatments of adrenocortical carcinomas
Cited by: 22
Author(s): Djihad Hadjadj, Su-Jung Kim, Thomas Denecker, Laura Ben Driss, Jean‐Charles Cadoret, Chrystelle Maric, Giuseppe Baldacci, Fabien Fauchereau
Software Mentions: 7
Published: almost 7 years ago

10.3389/fonc.2021.618187

CCR4, CCR8, and P2RY14 as Prognostic Factors in Head and Neck Squamous Cell Carcinoma Are Involved in the Remodeling of the Tumor Microenvironment
Cited by: 9
Author(s): Liangliang Meng, Xiaoxi He, Hong Qin, Bo Qiao, Xiao Zhang, Bin Wu, Xiaobo Zhang, Yingtian Wei, Jing Li, Zhaoxiang Ye, Yueyong Xiao
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12889-021-11530-0

Onset of effects of non-pharmaceutical interventions on COVID-19 infection rates in 176 countries
Cited by: 18
Author(s): Ingo W. Nader, Elisabeth L. Zeilinger, Dana Jomar, Clemens Zauchner
Software Mentions: 7
Published: over 3 years ago

10.3389/fgene.2015.00287

Design, measurement and processing of region-specific DNA methylation assays: the mass spectrometry-based method EpiTYPER
Cited by: 56
Author(s): H. Eka D. Suchiman, Roderick C. Slieker, Dennis Kremer, P. Eline Slagboom, Bastiaan T. Heijmans, Elmar W. Tobi
Software Mentions: 7
Published: about 9 years ago

10.1186/s12859-021-04392-1

shinyCurves, a shiny web application to analyse multisource qPCR amplification data: a COVID-19 case study
Cited by: 1
Author(s): Sonia Olaechea-Lázaro, Iraia García-Santisteban, José Ramón Pineda, Iker Badiola, Santos Alonso, José Ramón Bilbao, Nora Fernández-Jiménez
Software Mentions: 7
Published: about 3 years ago

10.3390/jcm8081128

NEWS2 is Superior to qSOFA in Detecting Sepsis with Organ Dysfunction in the Emergency Department
Cited by: 60
Author(s): Lisa Mellhammar, Adam Linder, Jonas Tverring, Bértil Christensson, John H. Boyd, Parham Sendi, Per Åkesson, Fredrik Kahn
Software Mentions: 7
Published: over 5 years ago

10.3390/cancers13174476

Combining APR-246 and HDAC-Inhibitors: A Novel Targeted Treatment Option for Neuroblastoma
Cited by: 8
Author(s): Michael Müller, Lisa Rösch, Sara Najafi, Charlotte Gatzweiler, Johannes Ridinger, Xenia F Gerloff, David Jones, Jochen Baßler, Sina Kreth, Sabine Stainczyk, Karen Frese, Benjamin Meder, Frank Westermann, Till Milde, Heike Peterziel, Olaf Witt, Ina Oehme
Software Mentions: 7
Published: about 3 years ago

10.3389/fpls.2016.01446

A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea
Cited by: 149
Author(s): Josh Clevenger, Ye Chu, Brian E. Scheffler, Peggy Ozias‐Akins
Software Mentions: 7
Published: about 8 years ago

10.3390/insects12050374

Buzzing Homes: Using Citizen Science Data to Explore the Effects of Urbanization on Indoor Mosquito Communities
Cited by: 7
Author(s): Nadja Pernat, Helge Kampen, Jonathan M. Jeschke, Doreen Werner
Software Mentions: 7
Published: over 3 years ago

10.3390/jcm9061974

Dysregulation of microRNA Modulatory Network in Abdominal Aortic Aneurysm
Cited by: 13
Author(s): Daniel Zalewski, Karol P Ruszel, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Łukasz Komsta, Przemysław Kołodziej, Paulina Chmiel, Tomasz Zubilewicz, Marcin Feldo, Janusz Kocki, Anna Bogucka‐Kocka
Software Mentions: 7
Published: over 4 years ago

10.3390/cancers13184710

Virtual Monoenergetic Images of Dual-Energy CT—Impact on Repeatability, Reproducibility, and Classification in Radiomics
Cited by: 10
Author(s): André Euler, Fabian Christopher Laqua, D. Cester, Niklas Lohaus, Thomas Sartoretti, Daniel Pinto dos Santos, Hatem Alkadhi, Bettina Baeßler
Software Mentions: 7
Published: about 3 years ago

10.1186/s10020-019-0093-2

IgG Galactosylation status combined with MYOM2-rs2294066 precisely predicts anti-TNF response in ankylosing spondylitis
Cited by: 12
Author(s): Jing Liu, Qi Zhu, Jing Han, Hui Zhang, Yuan Li, Yanyun Ma, Dongyi He, Jianxin Gu, Xiaodong Zhou, John D. Reveille, Li Jin, Hejian Zou, Shifang Ren, Jiucun Wang
Software Mentions: 7
Published: over 5 years ago

10.15252/msb.20209652

A substrate‐based ontology for human solute carriers
Cited by: 24
Author(s): Eva Meixner, Ulrich Goldmann, Vitaly Sedlyarov, Stefania Scorzoni, Manuele Rebsamen, Enrico Gottardi, Giulio Superti‐Furga
Software Mentions: 7
Published: over 4 years ago

10.1093/bioinformatics/btu616

Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking
Cited by: 112
Author(s): Paul J. McMurdie, Susan Holmes
Software Mentions: 7
Published: about 10 years ago

10.1371/journal.pone.0233309

Short Report: Asymptomatic Zika virus infections with low viral loads not likely to establish transmission in New Orleans Aedes populations
Cited by: 0
Author(s): Matthew J. Ward, Brendan H Carter, Christine Walsh, Joshua Yukich, Dawn M. Wesson, Rebecca C. Christofferson
Software Mentions: 7
Published: over 4 years ago

10.3389/fgene.2020.00634

Construction of a Comprehensive Multiomics Map of Hepatocellular Carcinoma and Screening of Possible Driver Genes
Cited by: 6
Author(s): Ziyu Liu, Yan Lin, Xing Gao, Rongyun Mai, Xuemin Piao, Jiazhou Ye, Rong Liang
Software Mentions: 7
Published: over 4 years ago

10.1186/s12870-020-02808-3

Integrated Transcriptomic and Metabolomic analysis reveals a transcriptional regulation network for the biosynthesis of carotenoids and flavonoids in ‘Cara cara’ navel Orange
Cited by: 18
Author(s): Haipeng Zhang, Jiajing Chen, Zhaoxin Peng, Meiyan Shi, Xiao Liu, Wen Huang, Youwu Jiang, Yunjiang Cheng, Juan Xu, Hongyan Zhang
Software Mentions: 7
Published: almost 4 years ago

10.3390/cancers13102432

Computational Treatment Simulations to Assess the Need for Personalized Tamoxifen Dosing in Breast Cancer Patients of Different Biogeographical Groups
Cited by: 1
Author(s): Anna Mueller‐Schoell, Robin Michelet, Lena Klopp‐Schulze, Madelé van Dyk, Thomas E. Mürdter, Matthias Schwab, Markus Joerger, Wilhelm Huisinga, Gerd Mikus, Charlotte Kloft
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0246932

Distribution and diversity of mosquitoes and Oropouche-like virus infection rates in an Amazonian rural settlement
Cited by: 10
Author(s): Jordam William Pereira-Silva, Claudia María Ríos-Velásquez, Gervilane Ribeiro de Lima, Eric Fabrício Marialva, Heliana Christy Matos Belchior, Sérgio Luíz Bessa Luz, Felipe Gomes Naveca, Felipe Arley Costa Pessoa
Software Mentions: 7
Published: almost 4 years ago

10.3390/pharmacy9010027

Sentiment Analysis of Online Reviews for Selective Serotonin Reuptake Inhibitors and Serotonin–Norepinephrine Reuptake Inhibitors
Cited by: 3
Author(s): Chad T. Compagner, Corey A. Lester, Michael P. Dorsch
Software Mentions: 7
Published: almost 4 years ago

10.3390/cancers13164087

Prognostic Value of Procalcitonin, C-Reactive Protein, and Lactate Levels in Emergency Evaluation of Cancer Patients with Suspected Infection
Cited by: 5
Author(s): Patrick Chaftari, Aiham Qdaisat, Anne-Marie Chaftari, Julian Maamari, Ziyi Li, Florea Lupu, Issam Raad, Ray Hachem, George A. Calin, Sai Ching Jim Yeung
Software Mentions: 7
Published: over 3 years ago

10.1186/s12870-019-1791-1

Size matters: three methods for estimating nuclear size in mycorrhizal roots of Medicago truncatula by image analysis
Cited by: 9
Author(s): Gennaro Carotenuto, Ivan Arcangelo Sciascia, Ludovica Oddi, Veronica Volpe, Andrea Genre
Software Mentions: 7
Published: over 5 years ago

10.1186/s12931-020-01392-2

Characterisation of microbiota in saliva, bronchoalveolar lavage fluid, non-malignant, peritumoural and tumour tissue in non-small cell lung cancer patients: a cross-sectional clinical trial
Cited by: 27
Author(s): Rea Bingula, Edith Filaire, Ioana Molnar, Eve Delmas, Jean‐Yves Berthon, Marie‐Paule Vasson, Annick Bernalier-Donadille, Marc Filaire
Software Mentions: 7
Published: over 4 years ago

10.7717/peerj.4718

phylopath: Easy phylogenetic path analysis in R
Cited by: 90
Author(s): Wouter van der Bijl
Software Mentions: 7
Published: over 6 years ago

Projects: cran: ggplot2

Papers Mentioning ggplot2 11,441