Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13073-019-0695-x

https://doi.org/10.1186/s13073-019-0695-x

FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures

Cited by: 7
Author(s): Hyunbin Kim, Andy Jinseok Lee, Jongkeun Lee, Hyonho Chun, Young Seok Ju, Dong Ho Hong
Published: almost 5 years ago

Software Mentions 7

bioconductor: MutationalPatterns
Comprehensive genome-wide analysis of mutational processes
Papers that mentioned: 32
cran: deconstructSigs
Identifies Signatures Present in a Tumor Sample
Papers that mentioned: 85
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggseqlogo
A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos
Papers that mentioned: 49
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: mc3
Multi-core Markov-chain Monte Carlo package.
Papers that mentioned: 2