Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: ggplot2
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
48 versions
Latest release: about 1 year ago
4,921 dependent packages
2,865,232 downloads last month
Papers Mentioning ggplot2 11,441
10.1038/s41598-019-42784-9
Transcriptomic profiles conducive to immune-mediated tumor rejection in human breast cancer skin metastases treated with ImiquimodCited by: 23
Author(s): Mariya Rozenblit, Wouter Hendrickx, Adriana Heguy, Luis Chiriboga, Cynthia A. Loomis, Karina Ray, Farbod Darvishian, Mikala Egeblad, Sandra Demaria, Francesco M. Marincola, Davide Bedognetti, Sylvia Adams
Software Mentions: 7
Published: over 5 years ago
10.1186/s12885-017-3689-3
GRcalculator: an online tool for calculating and mining dose–response dataCited by: 57
Author(s): Nicholas Clark, Marc Hafner, Michal Kouril, Liz Williams, Jeremy Muhlich, Marcin Pilarczyk, Mario Niepel, Peter K. Sorger, Mario Medvedovic
Software Mentions: 7
Published: about 7 years ago
10.1038/s41598-019-43875-3
Gut microbiome differences between wild and captive black rhinoceros – implications for rhino healthCited by: 77
Author(s): Keylie M. Gibson, Bryan Nguyen, Laura Neumann, Michele A. Miller, Peter Buss, Savel R. Daniels, Michelle Ahn, Keith A. Crandall, Budhan S. Pukazhenthi
Software Mentions: 7
Published: over 5 years ago
10.1038/s41598-019-42638-4
A systematic study towards evolutionary and epidemiological dynamics of currently predominant H5 highly pathogenic avian influenza viruses in VietnamCited by: 14
Author(s): Lam T. Nguyen, Simon M. Firestone, Mark Stevenson, Neil D. Young, L. D. Sims, Duc Huy Chu, Tien Ngoc Nguyen, Long Giang Nguyen, Tung Thanh Le, Hung Van Nguyen, Hung N. Nguyen, Tien Ngoc Tien, Tho Dang Nguyen, Bryant Tran, Keita Matsuno, Masatoshi Okamatsu, Hiroshi Kida, Yoshihiro Sakoda
Software Mentions: 7
Published: over 5 years ago
10.3389/fped.2021.654596
Adverse Maternal and Neonatal Outcomes in Women With Elevated Intrapartum Temperature Complicated by Histological Chorioamnionitis at Term: A Propensity-Score Matched StudyCited by: 2
Author(s): Yingzhou Ge, Chen Zhang, Yanqing Cai, He‐Feng Huang
Software Mentions: 7
Published: over 3 years ago
10.1155/2021/5555634
Downregulation of ATP6V1A Involved in Alzheimer’s Disease via Synaptic Vesicle Cycle, Phagosome, and Oxidative PhosphorylationCited by: 15
Author(s): Zhike Zhou, Jun Bai, Shanshan Zhong, Rongwei Zhang, Kexin Kang, Xiaoqian Zhang, Ying Xu, Chuansheng Zhao, Mei Zhao
Software Mentions: 7
Published: over 3 years ago
10.1186/s12902-021-00732-7
Incidence and prognostic factors of primary thyroid lymphoma and construction of prognostic models for post-chemotherapy and postoperative patients: a population-based studyCited by: 1
Author(s): Nan Xiang, Fangyuan Dong, Xuebing Zhan, Shuhan Wang, Junjie Wang, Entao Sun, Bing Chen
Software Mentions: 7
Published: over 3 years ago
10.1002/1878-0261.12911
LncRNA NKX2‐1‐AS1 promotes tumor progression and angiogenesis via upregulation of SERPINE1 expression and activation of the VEGFR‐2 signaling pathway in gastric cancerCited by: 39
Author(s): Fei Teng, Ju‐Xiang Zhang, Yi Chen, Xiaodong Shen, Chang Su, Yanjiao Guo, Pu‐Hua Wang, Chencheng Shi, Ming Lei, Yiou Cao, Shao‐Qun Liu
Software Mentions: 7
Published: almost 4 years ago
10.1002/edm2.191
Sex and oestrogen receptor β have modest effects on gene expression in the mouse brain posterior cortexCited by: 1
Author(s): Jasmine A. Fels, Gabriella Casalena, Giovanni Manfredi
Software Mentions: 7
Published: about 4 years ago
10.1038/s41598-019-43758-7
In silico prediction of housekeeping long intergenic non-coding RNAs reveals HKlincR1 as an essential player in lung cancer cell survivalCited by: 2
Author(s): Danish Memon, Jing Bi, Crispin Miller
Software Mentions: 7
Published: over 5 years ago
10.1371/journal.pone.0257386
(DIGSS) Determination of Intervals using Georeferenced Survey Simulation: An R package for subsurface surveyCited by: 0
Author(s): William J. Pestle, Cara Hubbell, Mark Hübbe
Software Mentions: 7
Published: about 3 years ago
10.1038/s41598-019-43829-9
Tissue-specific genes as an underutilized resource in drug discoveryCited by: 29
Author(s): Maria Ryaboshapkina, Mårten Hammar
Software Mentions: 7
Published: over 5 years ago
10.1186/s12859-015-0608-y
affy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism callingCited by: 3
Author(s): Carles Hernandez‐Ferrer, Inés Quintela, Katharina Danielski, Ángel Carracedo, Luis A. Pérez‐Jurado, Juan R. González
Software Mentions: 7
Published: over 9 years ago
10.1186/s12915-021-01134-w
Comparative analysis reveals within-population genome size variation in a rotifer is driven by large genomic elements with highly abundant satellite DNA repeat elementsCited by: 7
Author(s): Claus‐Peter Stelzer, Julie Blommaert, Ann‐Marie Waldvogel, Maria Pichler, Bette Hecox-Lea, David Welch
Software Mentions: 7
Published: about 3 years ago
10.1016/j.erss.2020.101704
Grounded reality meets machine learning: A deep-narrative analysis framework for energy policy researchCited by: 20
Author(s): Ramit Debnath, Sarah Darby, Ronita Bardhan, Kamiar Mohaddes, Minna Sunikka-Blank
Software Mentions: 7
Published: about 4 years ago
10.1371/journal.pone.0238916
Structural field margin characteristics affect the functional traits of herbaceous vegetationCited by: 4
Author(s): Cian Blaix, Anna-Camilla Moonen
Software Mentions: 7
Published: about 4 years ago
10.1186/s12915-021-01062-9
Exposure to ethanol leads to midfacial hypoplasia in a zebrafish model of FASD via indirect interactions with the Shh pathwayCited by: 12
Author(s): Alfire Sidik, Groves Dixon, Desirè M. Buckley, Hannah G. Kirby, Suwan Sun, Johann K. Eberhart
Software Mentions: 7
Published: over 3 years ago
10.1186/s12862-021-01821-w
Phylogenetic history influences convergence for a specialized ecology: comparative skull morphology of African burrowing skinks (Squamata; Scincidae)Cited by: 7
Author(s): Natasha Stepanova, Aaron M. Bauer
Software Mentions: 7
Published: over 3 years ago
10.1038/s41598-019-40285-3
Phenotypic and transcriptomic characterization of canine myeloid-derived suppressor cellsCited by: 22
Author(s): Michelle R. Goulart, Sabina I. Hlavaty, Yu-Mei Chang, Gerry Polton, Anneliese Stell, James A. Perry, Ying Wu, Eshita Sharma, John Broxholme, Avery C. Lee, Balázs Szladovits, Mark Turmaine, John G. Gribben, Dong Xia, Oliver A. Garden
Software Mentions: 7
Published: over 5 years ago
10.1038/s41598-019-40604-8
Structure and evolutionary implications of the earliest (Sinemurian, Early Jurassic) dinosaur eggs and eggshellsCited by: 24
Author(s): Koen Stein, Edina Prondvai, Timothy D. Huang, Jean-Marc Baele, P. Martin Sander, Robert R. Reisz
Software Mentions: 7
Published: over 5 years ago
10.1038/s41598-018-37145-x
Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behaviorCited by: 22
Author(s): Jean‐Baptiste Juhel, Laurent Vigliola, Laurent Wantiez, Tom B. Letessier, Jessica J. Meeuwig, David Mouillot
Software Mentions: 7
Published: almost 6 years ago
10.15252/msb.20177881
High‐resolution definition of humoral immune response correlates of effective immunity against <scp>HIV</scp>Cited by: 33
Author(s): Galit Alter, Karen G. Dowell, Eric N. Brown, Todd J. Suscovich, Anastassia Mikhailova, Alison E. Mahan, Bruce D. Walker, Falk Nimmerjahn, Chris Bailey‐Kellogg, Margaret E. Ackerman
Software Mentions: 7
Published: over 6 years ago
10.1371/journal.pone.0237079
A core phyllosphere microbiome exists across distant populations of a tree species indigenous to New ZealandCited by: 17
Author(s): Anya Sophia Noble, Stevie Noe, Michael J. Clearwater, Charles K. Lee
Software Mentions: 7
Published: over 4 years ago
10.1038/s41598-019-41940-5
The ciliary Frizzled-like receptor Tmem67 regulates canonical Wnt/β-catenin signalling in the developing cerebellum via Hoxb5Cited by: 15
Author(s): Zakia Abdelhamed, Dina Abdelmottaleb, Mohammed E. El‐Asrag, Subaashini Natarajan, Gabrielle Wheway, Chris F. Inglehearn, Carmel Toomes, Colin A. Johnson
Software Mentions: 7
Published: over 5 years ago
10.1242/dmm.049068
A mechanism linking perinatal 2,3,7,8 tetrachlorodibenzo-p-dioxin exposure to lower urinary tract dysfunction in adulthoodCited by: 4
Author(s): Anne E. Turco, S. G. Oakes, Kimberly P. Keil Stietz, Cheryl L. Dunham, Diya B. Joseph, Thrishna S Chathurvedula, Nicholas M Girardi, Andrew J. Schneider, Joseph Gawdzik, Celeste M Sheftel, Peiqing Wang, Zunyi Wang, Dale E. Bjorling, William A. Ricke, Weiping Tang, Laura Hernández, Janet R. Keast, Adrian D. Bonev, Matthew D Grimes, Douglas W. Strand, Nathan R. Tykocki, Robyn L Tanguay, Richard E. Peterson, Chad M. Vezina
Software Mentions: 7
Published: over 3 years ago
10.3389/fmicb.2020.01234
Impacts of Anthropogenic Pollutants on Benthic Prokaryotic Communities in Mediterranean Touristic PortsCited by: 14
Author(s): Elena Tamburini, Lapo Doni, Raffaela Lussu, Federico Meloni, Giovanna Salvatorica Cappai, Alessandra Carucci, Enrico Casalone, Giorgio Mastromei, Francesco Vitali
Software Mentions: 7
Published: over 4 years ago
10.1038/s41598-018-26930-3
Variation in faecal microbiota in a group of horses managed at pasture over a 12-month periodCited by: 64
Author(s): Shebl E. Salem, Thomas W. Maddox, Adam Berg, Philipp Antczak, Julian M. Ketley, Nicola Williams, Debra Archer
Software Mentions: 7
Published: over 6 years ago
10.3390/insects11060373
Susceptibility of Red Mason Bee Larvae to Bacterial Threats Due to Microbiome Exchange with Imported Pollen ProvisionsCited by: 22
Author(s): Anna Voulgari‐Kokota, Ingolf Steffan‐Dewenter, Alexander Keller
Software Mentions: 7
Published: over 4 years ago
10.1038/s41598-018-29373-y
Experimentally induced metamorphosis in highly regenerative axolotl (ambystoma mexicanum) under constant diet restructures microbiotaCited by: 25
Author(s): Turan Demircan, Guvanch Ovezmyradov, Berna Yıldırım, İlknur Keskin, Ayşe Elif İlhan, Ece Cana Fesçioğlu, Gürkan Öztürk, Süleyman Yıldırım
Software Mentions: 7
Published: over 6 years ago
10.1186/s12935-021-02086-5
PODN is a prognostic biomarker and correlated with immune infiltrates in osteosarcomaCited by: 9
Author(s): Feng Yao, Zhenxin Zhu, Jun Wen, Fu Yong Zhang, Zheng Zhang, Lei Zhu, Guang Hao Su, Quan Yuan, Yun Fang Zhen, Xiao Dong Wang
Software Mentions: 7
Published: over 3 years ago
10.1038/s41598-018-25234-w
Seasonal dynamics of typhoid and paratyphoid feverCited by: 38
Author(s): Neil J. Saad, Victoria D. Lynch, Marina Antillón, Chongguang Yang, John A. Crump, Virginia E. Pitzer
Software Mentions: 7
Published: over 6 years ago
10.1371/journal.pone.0249735
Mix and match: Patchwork domain evolution of the land plant-specific Ca2+-permeable mechanosensitive channel MCACited by: 10
Author(s): Kanae Nishii, Michael Möller, Hidetoshi Iida
Software Mentions: 7
Published: over 3 years ago
10.1186/s12935-021-01774-6
Tumor mutation burden in connection with immune-related survival in uterine corpus endometrial carcinomaCited by: 14
Author(s): Ling Zhao, Xueshu Fu, Xiling Han, Yu Yao, Yaping Ye, Jun Gao
Software Mentions: 7
Published: almost 4 years ago
10.1371/journal.pone.0232306
A new automated chilled adult release system for the aerial distribution of sterile male tsetse fliesCited by: 4
Author(s): Caroline K. Mirieri, Gratian N. Mutika, Jimmy Bruno, Momar Talla Seck, Baba Sall, Andrew G. Parker, Monique M. van Oers, Marc J. B. Vreysen, Jérémy Bouyer, Adly M. M. Abd-Alla
Software Mentions: 7
Published: about 4 years ago
10.1038/s41598-018-25601-7
Slow touch targeting CT-fibres does not increase prosocial behaviour in economic laboratory tasksCited by: 15
Author(s): Lisa Rosenberger, Anbjà ̧rn Ree, Christoph Eisenegger, Uta Sailer
Software Mentions: 7
Published: over 6 years ago
10.3389/fmicb.2018.01620
Rhizosphere Bacterial Communities Differ According to Fertilizer Regimes and Cabbage (Brassica oleracea var. capitata L.) Harvest Time, but Not Aphid HerbivoryCited by: 26
Author(s): Flora Jane Mary O'Brien, Marc G. Dumont, Jeremy S. Webb, Guy M. Poppy
Software Mentions: 7
Published: over 6 years ago
10.1155/2021/8323487
LncRNA ELF3-AS1 is a Prognostic Biomarker and Correlated with Immune Infiltrates in Hepatocellular CarcinomaCited by: 14
Author(s): Tianming Chen, Changhao Zhu, Xing Wang, Yaozhen Pan
Software Mentions: 7
Published: over 3 years ago
10.1186/s12859-018-2435-4
Single sample scoring of molecular phenotypesCited by: 230
Author(s): Momeneh Foroutan, Dharmesh D. Bhuva, Ruqian Lyu, Kristy Horan, Joseph Cursons, Melissa J. Davis
Software Mentions: 7
Published: about 6 years ago
10.1038/s41598-020-63186-2
Socially engaged calves are more likely to be colonised by VTEC O157:H7 than individuals showing signs of poor welfareCited by: 4
Author(s): Lena-Mari Tamminen, C. Reed Hranac, Johan Dicksved, Erik Eriksson, Ulf Emanuelson, Linda J. Keeling
Software Mentions: 7
Published: over 4 years ago
10.3389/fgene.2020.00396
Single-Cell Transcriptomic Analysis Reveals Mitochondrial Dynamics in Oocytes of Patients With Polycystic Ovary SyndromeCited by: 34
Author(s): Lingbin Qi, Boxuan Liu, Xian Chen, Qiwei Liu, Wanqiong Li, Bo Lv, Xiaoyu Xu, Lu Wang, Qiao Zeng, Jinfeng Xue, Zhigang Xue
Software Mentions: 7
Published: over 4 years ago
10.3389/fcell.2019.00283
A Combined Mass Spectrometry and Data Integration Approach to Predict the Mitochondrial Poly(A) RNA Interacting ProteomeCited by: 2
Author(s): Selma L van Esveld, Şirin Cansız-Arda, Fenna Hensen, Robin van der Lee, Martijn Huynen, Johannes N. Spelbrink
Software Mentions: 7
Published: about 5 years ago
10.1371/journal.pbio.3000988
The molecular and metabolic program by which white adipocytes adapt to cool physiologic temperaturesCited by: 9
Author(s): Hiroyuki Mori, Colleen E. Dugan, Akira Nishii, Ameena Benchamana, Ziru Li, Thomas S. Cadenhead, Arun K. Das, Charles R. Evans, Katherine A. Overmyer, Steven M. Romanelli, Sydney K. Peterson, Devika P. Bagchi, Callie A.S. Corsa, Julie Hardij, Brian S. Learman, Mahmoud El Azzouny, Joshua J. Coon, Ken Inoki, Ormond A. MacDougald
Software Mentions: 7
Published: over 3 years ago
10.3390/microorganisms9020315
TAL Effector Repertoires of Strains of Xanthomonas phaseoli pv. manihotis in Commercial Cassava Crops Reveal High Diversity at the Country ScaleCited by: 6
Author(s): Carlos A Zárate-Chaves, Daniela Osorio-Rodríguez, Ruben E. Mora, Álvaro L. Pérez‐Quintero, Alexis Dereeper, Silvia Restrepo, Camilo López, Boris Szurek, Adriana Bernal
Software Mentions: 7
Published: almost 4 years ago
10.3389/fpsyg.2019.00413
A Shared Food Source Is Not Necessary to Elicit Inequity Aversion in DogsCited by: 5
Author(s): Jim McGetrick, Sabrina Ausserwöger, Ingrid Leidinger, Claudia Attar, Friederike Range
Software Mentions: 7
Published: over 5 years ago
10.3389/fmicb.2017.00358
Temporal Variations in Cigarette Tobacco Bacterial Community Composition and Tobacco-Specific Nitrosamine Content Are Influenced by Brand and Storage ConditionsCited by: 38
Author(s): Jessica Chopyk, Suhana Chattopadhyay, Prachi Kulkarni, Eoghan M. Smyth, Lauren E. Hittle, Joseph N. Paulson, Mihai Pop, Stephanie Buehler, Pamela I. Clark, Emmanuel F. Mongodin, Amy R. Sapkota
Software Mentions: 7
Published: over 7 years ago
10.3390/md18080379
Laminariales Host Does Impact Lipid Temperature Trajectories of the Fungal Endophyte Paradendryphiella salina (Sutherland.)Cited by: 2
Author(s): Marine Vallet, Tarik Méziane, Najet Thiney, Soizic Prado, Cédric Hubas
Software Mentions: 7
Published: over 4 years ago
10.3389/fnmol.2021.680280
Impaired SNF2L Chromatin Remodeling Prolongs Accessibility at Promoters Enriched for Fos/Jun Binding Sites and Delays Granule Neuron DifferentiationCited by: 1
Author(s): Laura Rose Goodwin, Gerardo Zapata, Sara Timpano, Jacob Marenger, David J. Picketts
Software Mentions: 7
Published: over 3 years ago
10.3389/fmolb.2021.656145
Identification and Exploration of Novel Macrophage M2-Related Biomarkers and Potential Therapeutic Agents in EndometriosisCited by: 10
Author(s): Zhongqi Cui, Ramesh Singh Bhandari, Lei Qin, Mingzhi Lu, Lei Zhang, Mengmei Zhang, Fenyong Sun, Lijin Feng, Shasha Zhao
Software Mentions: 7
Published: over 3 years ago
10.1371/journal.pbio.3000797
An in vitro model of tumor heterogeneity resolves genetic, epigenetic, and stochastic sources of cell state variabilityCited by: 15
Author(s): Corey E. Hayford, Darren R. Tyson, Charles J. Robbins, Peter L. Frick, Vito Quaranta, Leonard A. Harris
Software Mentions: 7
Published: over 3 years ago
10.1038/s42003-020-01626-5
Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroupsCited by: 44
Author(s): Kaleb Z. Abram, Zulema Udaondo, Carissa Bleker, Visanu Wanchai, Trudy M. Wassenaar, Michael S. Robeson, David W. Ussery
Software Mentions: 7
Published: almost 4 years ago
10.3389/fpsyg.2018.02358
East Asian Young and Older Adult Perceptions of Emotional Faces From an Age- and Sex-Fair East Asian Facial Expression DatabaseCited by: 13
Author(s): Yu-Zhen Tu, Dai-Jie Lin, Atsunobu Suzuki, Joshua Oon Soo Goh
Software Mentions: 7
Published: almost 6 years ago
10.3389/fmicb.2018.02520
Reduced Chlorine in Drinking Water Distribution Systems Impacts Bacterial Biodiversity in BiofilmsCited by: 63
Author(s): Claire Bertelli, Sophie Courtois, Marta Rosikiewicz, P. Piriou, Sébastien Aeby, Robert Salais, Jean-François Loret, Gilbert Greub
Software Mentions: 7
Published: about 6 years ago
10.3389/fgene.2020.00936
NRG1, PIP4K2A, and HTR2C as Potential Candidate Biomarker Genes for Several Clinical Subphenotypes of Depression and Bipolar DisorderCited by: 13
Author(s): Аnastasia Levchenko, N. Vyalova, Timur Nurgaliev, Ivan V Pozhidaev, German G. Simutkin, Н. А. Бохан, Светлана Иванова
Software Mentions: 7
Published: over 4 years ago
10.1161/CIRCULATIONAHA.117.028084
Direct Comparison of Cardiac Myosin-Binding Protein C With Cardiac Troponins for the Early Diagnosis of Acute Myocardial InfarctionCited by: 57
Author(s): Thomas E Kaier, Raphael Twerenbold, Christian Puelacher, Jack Marjot, Nazia Imambaccus, Jasper Boeddinghaus, Thomas Nestelberger, Patrick Badertscher, Zaid Sabti, María Rubini Giménez, Karin Wildi, Petra Hillinger, Karin Grimm, Sarah Loeffel, Samyut Shrestha, Dayana Flores, Janosch Cupa, Nikola Kozhuharov, Òscar Miró, Francisco Javier Martín‐Sánchez, Beata Morawiec, Katharina Rentsch, Jens Lohrmann, Wanda Kloos, Stefan Oßwald, Tobias Reichlin, Ekkehard Weber, Michael Marber, Christian Müeller
Software Mentions: 7
Published: about 7 years ago
10.1371/journal.pone.0242020
Comparing the success of active and passive restoration in a tropical cloud forest landscape: A multi-taxa fauna approachCited by: 20
Author(s): Juan Manuel Díaz-García, Fabiola López‐Barrera, Eduardo Pineda, Tarin Toledo‐Aceves, Ellen Andresen
Software Mentions: 7
Published: about 4 years ago
10.3389/fmicb.2018.02528
Bacterial Diversity and the Geochemical Landscape in the Southwestern Gulf of MexicoCited by: 32
Author(s): Elizabeth Ernestina Godoy-Lozano, Alejandra Escobar‐Zepeda, Luciana Raggi, Enrique Merino, Rosa Marı́a Gutiérrez-Rı́os, Katy Juarez, Lorenzo Segovia, Alexei F. Licea-Navarro, Adolfo Gracía, Alejandro Sánchez-Flores, Liliana Pardo-López
Software Mentions: 7
Published: about 6 years ago
10.3389/fnmol.2018.00225
NFIX Circular RNA Promotes Glioma Progression by Regulating miR-34a-5p via Notch Signaling PathwayCited by: 86
Author(s): Haidong Xu, Yu Zhang, Qi Ling, Lijuan Ding, Hong Jiang, Haojun Yu
Software Mentions: 7
Published: over 6 years ago
10.1002/gepi.22205
Imputed gene associations identify replicable <i>trans</i>‐acting genes enriched in transcription pathways and complex traitsCited by: 13
Author(s): Heather E. Wheeler, Sally Ploch, Alvaro N. Barbeira, Rodrigo Bonazzola, Angela Andaleon, Alireza Fotuhi Siahpirani, Ashis Saha, Alexis Battle, Sushmita Roy, Hae Kyung Im
Software Mentions: 7
Published: over 5 years ago
10.1002/cti2.1127
High‐dimensional analyses reveal a distinct role of T‐cell subsets in the immune microenvironment of gastric cancerCited by: 18
Author(s): Minyu Wang, Yen-Yu Huang, Joseph C Kong, Yu Sun, Daniela Tantalo, Han Xian Aw Yeang, Le Ying, Feng Yan, Dakang Xu, Heloise M. Halse, Natasha Di Costanzo, Ian Gordon, Catherine Mitchell, Laura K. Mackay, Rita A. Busuttil, Paul J. Neeson, Alex Boussioutas
Software Mentions: 7
Published: almost 5 years ago
10.3389/fpls.2020.602645
Bradyrhizobium as the Only Rhizobial Inhabitant of Mung Bean (Vigna radiata) Nodules in Tropical Soils: A Strategy Based on Microbiome for Improving Biological Nitrogen Fixation Using Bio-ProductsCited by: 11
Author(s): Vinício Oliosi Favero, Rita Hilário de Carvalho, Victória Monteiro da Motta, Ana Beatriz Carneiro Leite, Márcia Reed Rodrigues Coelho, Gustavo Ribeiro Xavier, Norma Gouvêa Rumjanek, Segundo Urquiaga
Software Mentions: 7
Published: almost 4 years ago
10.1002/ece3.5476
Plant‐driven changes in soil microbial communities influence seed germination through negative feedbacksCited by: 20
Author(s): E. C. Miller, Gabriel G. Perron, Cathy D. Collins
Software Mentions: 7
Published: over 5 years ago
10.3389/fpls.2020.619404
Barley Anther and Meiocyte Transcriptome Dynamics in Meiotic Prophase ICited by: 18
Author(s): Abdellah Barakate, Jamie Orr, Miriam Schreiber, Isabelle Colas, Dominika Lewandowska, Nicola McCallum, Malcolm Macaulay, Jenny Morris, Mikel Arrieta, Pete E. Hedley, Luke Ramsay, Robbie Waugh
Software Mentions: 7
Published: almost 4 years ago
10.1371/journal.pbio.3000301
Proteome-wide analysis of chaperone-mediated autophagy targeting motifsCited by: 125
Author(s): Philipp Kirchner, Mathieu Bourdenx, Julio Madrigal‐Matute, Simoni Tiano, Antonio Díaz, Boris Bartholdy, Britta Will, Ana María Cuervo
Software Mentions: 7
Published: over 5 years ago
10.3389/fcell.2021.688798
QSOX2 Is an E2F1 Target Gene and a Novel Serum Biomarker for Monitoring Tumor Growth and Predicting Survival in Advanced NSCLCCited by: 3
Author(s): Yaqi Li, Mei Liu, Zhuoxian Zhang, Libin Deng, Zhenyu Zhai, Hua Liu, Yiting Wang, Cheng Zhang, Jianping Xiong, Chao Shi
Software Mentions: 7
Published: over 3 years ago
10.1002/ece3.6062
Remotely sensed forest understory density and nest predator occurrence interact to predict suitable breeding habitat and the occurrence of a resident boreal bird speciesCited by: 8
Author(s): Julian Klein, Paul J. Haverkamp, Eva Lindberg, Michael Griesser, Sönke Eggers
Software Mentions: 7
Published: almost 5 years ago
10.1155/2020/7147824
Construction of Protein-related Risk Score Model in Bladder Urothelial CarcinomaCited by: 5
Author(s): Qizhan Luo, Xiaobo Zhang
Software Mentions: 7
Published: over 4 years ago
10.3389/fnins.2019.01042
Previous Musical Experience and Cortical Thickness Relate to the Beneficial Effect of Motor Synchronization on Auditory FunctionCited by: 3
Author(s): Natascha Merten, Johanna Kramme, Monique M.B. Breteler, Sibylle C. Herholz
Software Mentions: 7
Published: about 5 years ago
10.1186/s12864-019-6275-z
Genome-wide association study and genomic selection for soybean chlorophyll content associated with soybean cyst nematode toleranceCited by: 29
Author(s): Waltram Ravelombola, Jun Qin, Ainong Shi, Liana Nice, Yong Bao, Aaron J. Lorenz, J. H. Orf, Nevin D. Young, Senyu Chen
Software Mentions: 7
Published: about 5 years ago
10.3389/fpls.2020.589300
Intrafloral Color Modularity in a Bee-Pollinated OrchidCited by: 4
Author(s): João Marcelo Robazzi Bignelli Valente Aguiar, Artur A. Maciel, Pamela Cristina Santana, Francismeire Jane Telles, Pedro Joaquim Bergamo, Paulo Eugênio Oliveira, Vinícius Lourenço Garcia de Brito
Software Mentions: 7
Published: about 4 years ago
10.3390/microorganisms8050677
The Bacterial Gut Microbiota of Adult Patients Infected, Colonized or Noncolonized by Clostridioides difficileCited by: 21
Author(s): Monique J. T. Crobach, Quinten R Ducarmon, Elisabeth M. Terveer, Céline Harmanus, Ingrid M J G Sanders, Kees Verduin, Ed J. Kuijper, Romy D. Zwittink
Software Mentions: 7
Published: over 4 years ago
10.3390/microorganisms9030609
Microbial Succession under Freeze–Thaw Events and Its Potential for Hydrocarbon Degradation in Nutrient-Amended Antarctic SoilCited by: 3
Author(s): Hugo Emiliano de Jesus, Renato S. Carreira, Simone S.M. Paiva, Carlos German Massone, Alex Enrich‐Prast, Raquel S. Peixoto, Jorge L. M. Rodrigues, Charles K. Lee, S. Craig Cary, Alexandre Soares Rosado
Software Mentions: 7
Published: over 3 years ago
10.3389/fmicb.2019.00281
Drivers of Regional Bacterial Community Structure and Diversity in the Northwest Atlantic OceanCited by: 36
Author(s): Jackie Zorz, Ciara Willis, A. Comeau, Morgan G. I. Langille, Catherine L. Johnson, William K. W. Li, Julie LaRoche
Software Mentions: 7
Published: almost 6 years ago
10.3389/fpls.2019.01645
Early Responses of Brassica oleracea Roots to Zinc Supply Under Sufficient and Sub-Optimal Phosphorus SupplyCited by: 15
Author(s): Paula Pongrac, Sina Fischer, Jacqueline Thompson, G. M. Wright, Philip J. White
Software Mentions: 7
Published: almost 5 years ago
10.1186/s13059-020-02082-4
Genome-wide studies reveal the essential and opposite roles of ARID1A in controlling human cardiogenesis and neurogenesis from pluripotent stem cellsCited by: 22
Author(s): Juli Liu, Sheng Liu, Hongyu Gao, Lei Han, Xun Chu, Sheng Yi, Weinian Shou, Yue Wang, Yunlong Liu, Jun Wan, Lei Yang
Software Mentions: 7
Published: over 4 years ago
10.1371/journal.pone.0233309
Short Report: Asymptomatic Zika virus infections with low viral loads not likely to establish transmission in New Orleans Aedes populationsCited by: 0
Author(s): Matthew J. Ward, Brendan H Carter, Christine Walsh, Joshua Yukich, Dawn M. Wesson, Rebecca C. Christofferson
Software Mentions: 7
Published: over 4 years ago
10.3389/fonc.2020.01444
Development and Validation of an m6A RNA Methylation Regulator-Based Signature for Prognostic Prediction in Cervical Squamous Cell CarcinomaCited by: 32
Author(s): Jianji Pan, Lichao Xu, Hongda Pan
Software Mentions: 7
Published: over 4 years ago
10.3389/fgene.2020.590660
Identification of Key Genes and Potential New Biomarkers for Ovarian Aging: A Study Based on RNA-Sequencing DataCited by: 14
Author(s): Lingwei Ma, Huan Lu, Runhua Chen, Meng Wu, Yan Jin, Jinjin Zhang, Shixuan Wang
Software Mentions: 7
Published: about 4 years ago
10.7717/peerj.2574
<i>YUCCA</i>auxin biosynthetic genes are required for Arabidopsis shade avoidanceCited by: 60
Author(s): Patricia Müller-Moulé, Kazunari Nozue, Melissa L Pytlak, Christine M. Palmer, Michael F. Covington, Andreah D. Wallace, Stacey L. Harmer, Julin Maloof
Software Mentions: 7
Published: about 8 years ago
10.1016/j.molcel.2019.01.017
System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus InfectionCited by: 122
Author(s): Manuel García-Moreno, Marko Noerenberg, Shuai Ni, Aino I Järvelin, Esther González-Almela, Caroline E. Lenz, Marcel Bach-Pagés, Victoria Cox, Rosario Avolio, Thomas W. Davis, Svenja Hester, Thibault J.M. Sohier, Bingnan Li, Gregory Heikel, Gracjan Michlewski, Miguel Á. Sanz, Luís Carrasco, Emiliano P. Ricci, Vicent Pelechano, Ilan Davis, Bernd Fischer, Shabaz Mohammed, Alfredo Castelló
Software Mentions: 7
Published: over 5 years ago
10.1371/journal.pone.0227434
Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencingCited by: 237
Author(s): Andrei Prodan, Valentina Tremaroli, Harald Brolin, Aeilko H. Zwinderman, Max Nieuwdorp, Evgeni Levin
Software Mentions: 7
Published: almost 5 years ago
10.3389/fmolb.2020.587822
A Novel Prognostic Model of Endometrial Carcinoma Based on Clinical Variables and Oncogenomic Gene SignatureCited by: 5
Author(s): Fang Deng, Jing Mu, Changzheng Qu, Fang Yang, Xing Liu, Xiaomin Zhang, Xiaoning Peng
Software Mentions: 7
Published: almost 4 years ago
10.3390/cancers13061296
Candidate Markers of Olaparib Response from Genomic Data Analyses of Human Cancer Cell LinesCited by: 3
Author(s): Setor Amuzu, Eurı́dice Carmona, Anne-Marie Mes-Masson, Celia M.T. Greenwood, Patricia N. Tonin, Jiannis Ragoussis
Software Mentions: 7
Published: over 3 years ago
10.1002/ece3.4397
Effect of plant root symbionts on performance of native woody species in competition with an invasive grass in multispecies microcosmsCited by: 6
Author(s): Christina Birnbaum, Tim K. Morald, Mark Tibbett, Richard G. Bennett, Rachel J. Standish
Software Mentions: 7
Published: over 6 years ago
10.1371/journal.pone.0245626
Diversity of microbial communities and soil nutrients in sugarcane rhizosphere soil under water soluble fertilizerCited by: 20
Author(s): Huan Niu, Ziqin Pang, Nyumah Fallah, Yongmei Zhou, Caifang Zhang, Chaohua Hu, Wenxiong Lin, Zhaonian Yuan
Software Mentions: 7
Published: almost 4 years ago
10.1525/collabra.116
Individual Importance Weighting of Domain Satisfaction Ratings does Not Increase ValidityCited by: 21
Author(s): Julia M. Rohrer, Stefan C. Schmukle
Software Mentions: 7
Published: almost 7 years ago
10.3389/fonc.2020.553399
CD8+ T Cell Co-Expressed Genes Correlate With Clinical Phenotype and Microenvironments of Urothelial CancerCited by: 20
Author(s): Yutao Wang, Kexin Yan, Jiaxing Lin, Yang Liu, Jianfeng Wang, Xuejie Li, Xinxin Li, Zhixiong Hua, Zhenhua Zheng, Jianxiu Shi, Siqing Sun, Jianbin Bi
Software Mentions: 7
Published: about 4 years ago
10.3390/plants10051026
Foliar Endophytic Fungi from the Endangered Eastern Mountain Avens (Geum peckii, Rosaceae) in CanadaCited by: 4
Author(s): Sarah J. Adams, Brent M. Robicheau, D.M. LaRue, Robin Browne, Allison K. Walker
Software Mentions: 7
Published: over 3 years ago
10.1016/j.mex.2019.05.021
Inaccessible rocky cliffs: An optimized method for plant data collection in extreme environmentsCited by: 0
Author(s): Estrella Alfaro-Saíz, Víctor Granda, Alfonso Insuasty Rodríguez, Raquel Alonso Redondo, M. García-González
Software Mentions: 7
Published: almost 6 years ago
10.1002/ece3.3943
Seasonal bat activity related to insect emergence at three temperate lakesCited by: 26
Author(s): Ioanna Salvarina, Dorian Gravier, Karl‐Otto Rothhaupt
Software Mentions: 7
Published: over 6 years ago
10.1371/journal.pone.0254007
Text classification to streamline online wildlife trade analysesCited by: 7
Author(s): Oliver C. Stringham, Stephanie Moncayo, Katherine G. W. Hill, Adam Toomes, Lewis Mitchell, Joshua V. Ross, Phillip Cassey
Software Mentions: 7
Published: over 3 years ago
10.1111/mec.15724
Leech blood‐meal invertebrate‐derived DNA reveals differences in Bornean mammal diversity across habitatsCited by: 19
Author(s): Rosie Drinkwater, Tommaso Jucker, Joshua H.T. Potter, Tom Swinfield, David A. Coomes, Eleanor M. Slade, M. Thomas P. Gilbert, Owen T. Lewis, Henry Bernard, Matthew J. Struebig, Elizabeth L. Clare, Stephen J. Rossiter
Software Mentions: 7
Published: about 4 years ago
10.1097/MD.0000000000024184
Screening the key genes of prognostic value in the microenvironment for head and neck squamous cell carcinomaCited by: 4
Author(s): Di Meng, Tongjun Liu, Feng Ma, Mingguo Wang
Software Mentions: 7
Published: almost 4 years ago
10.7717/peerj.4626
Surface display for metabolic engineering of industrially important acetic acid bacteriaCited by: 4
Author(s): Marshal Blank, Paul Schweiger
Software Mentions: 7
Published: over 6 years ago
10.3390/plants9121700
Transcriptome Analysis of Alternative Splicing Events Induced by Arbuscular Mycorrhizal Fungi (Rhizophagus irregularis) in Pea (Pisum sativum L.) RootsCited by: 8
Author(s): Evgeny A. Zorin, Alexey М. Afonin, Olga A. Kulaeva, Emma S. Gribchenko, O. Y. Shtark, Vladimir A. Zhukov
Software Mentions: 7
Published: almost 4 years ago
10.3389/fmicb.2020.628755
Horizontal Transmission of the Heritable Protective Endosymbiont Hamiltonella defensa Depends on Titre and HaplotypeCited by: 11
Author(s): Heidi Kaech, Christoph Vorburger
Software Mentions: 7
Published: almost 4 years ago
10.3389/fpsyt.2021.668297
Estimating the Prevalence and Genetic Risk Mechanisms of ARFID in a Large Autism CohortCited by: 26
Author(s): Tanner Koomar, Taylor Thomas, Natalie R. Pottschmidt, Michael Lutter, Jacob J. Michaelson
Software Mentions: 7
Published: over 3 years ago
10.1186/s12864-019-6162-7
Transcriptome analysis of the differential effect of the NADPH oxidase gene RbohB in Phaseolus vulgaris roots following Rhizobium tropici and Rhizophagus irregularis inoculationCited by: 11
Author(s): Citlali Fonseca-García, Alejandra E. Zayas, Jesús Montiel, Noreide Nava, Federico Sánchez, Carmen Quinto
Software Mentions: 7
Published: about 5 years ago
10.3389/fgene.2021.678780
Identification of a Four-Gene Signature With Prognostic Significance in Endometrial Cancer Using Weighted-Gene Correlation Network AnalysisCited by: 7
Author(s): Shijin Huang, Lihong Pang, Changqiang Wei
Software Mentions: 7
Published: about 3 years ago
10.3389/fmolb.2021.659168
Transcriptomic Profiling Identifies DCBLD2 as a Diagnostic and Prognostic Biomarker in Pancreatic Ductal AdenocarcinomaCited by: 9
Author(s): Zengyu Feng, Kexian Li, Yulian Wu, Chenghong Peng
Software Mentions: 7
Published: over 3 years ago
10.3390/cancers12030690
Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex VivoCited by: 17
Author(s): Nicholas R. Hum, Aimy Sebastian, Sean F. Gilmore, Wei He, Kelly A. Martin, Aubree Hinckley, Karen Dubbin, Monica L. Moya, Elizabeth K. Wheeler, Matthew A. Coleman, Gabriela G. Loots
Software Mentions: 7
Published: over 4 years ago