cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fgene.2020.00634

Construction of a Comprehensive Multiomics Map of Hepatocellular Carcinoma and Screening of Possible Driver Genes
Cited by: 6
Author(s): Ziyu Liu, Yan Lin, Xing Gao, Rongyun Mai, Xuemin Piao, Jiazhou Ye, Rong Liang
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pbio.2000532

A fat-derived metabolite regulates a peptidergic feeding circuit in Drosophila
Cited by: 22
Author(s): Dohyoung Kim, Min-Gyoung Shin, Sunghwan Jung, Youngjoon Kim, Walton D. Jones
Software Mentions: 7
Published: over 9 years ago

10.1001/jamanetworkopen.2019.4392

Association of Data Integration Technologies With Intensive Care Clinician Performance
Cited by: 7
Author(s): Ying Ling Lin, Patricia Trbovich, Lauren Kolodzey, Cheri Nickel, Anne‐Marie Guerguerian
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0206507

Assessing mental health service user and carer involvement in physical health care planning: The development and validation of a new patient-reported experience measure
Cited by: 3
Author(s): Chris Sidey‐Gibbons, Helen Brooks, Judith Gellatly, Nicola Small, Karina Lovell, Penny Bee
Software Mentions: 7
Published: over 7 years ago

10.1155/2018/3149495

Development of Regional Disparities in Alzheimer’s Disease Mortality in the Slovak Republic from 1996 to 2015
Cited by: 2
Author(s): Beata Gavurová, Viliam Kováč, D Jarcusková
Software Mentions: 7
Published: almost 8 years ago

10.1186/s42523-021-00130-3

Differential effects of elevated nest temperature and parasitism on the gut microbiota of wild avian hosts
Cited by: 5
Author(s): Melissa R. Ingala, Lauren Albert, Alyssa Addesso, Mackenzie J. Watkins, Sarah A. Knutie
Software Mentions: 7
Published: almost 5 years ago

10.7717/peerj.11219

Construction and validation of an RNA-binding protein-associated prognostic model for colorectal cancer
Cited by: 8
Author(s): Yifei Miao, Hongling Zhang, Bai-Horng Su, Jiangtao Wang, Wuxia Quan, Qiutian Li, Denghai Mi
Software Mentions: 7
Published: over 5 years ago

10.3389/fgene.2020.577585

Development of an miRNA-Array-Based Diagnostic Signature for Periodontitis
Cited by: 11
Author(s): Sanli Jin, Jianguo Zhou, Xiaoyan Guan, Guohui Bai, Jianguo Liu, Liangwen Chen
Software Mentions: 7
Published: over 5 years ago

10.3389/fgene.2021.737656

Integrated Analysis of the Expression Characteristics, Prognostic Value, and Immune Characteristics of PPARG in Breast Cancer
Cited by: 5
Author(s): Jianbin Wu, Mingmin Luo, Zhuangwei Chen, Lei Li, Xiaoxi Huang
Software Mentions: 7
Published: almost 5 years ago

10.1098/rsos.160471

Maternal effects and Symbiodinium community composition drive differential patterns in juvenile survival in the coral Acropora tenuis
Cited by: 55
Author(s): Kate M. Quigley, Bette L. Willis, Line K. Bay
Software Mentions: 7
Published: almost 10 years ago

10.3390/plants10050998

Sources of Resistance to Common Bacterial Blight and Charcoal Rot Disease for the Production of Mesoamerican Common Beans in the Southern United States
Cited by: 5
Author(s): Daniel Ambachew, Jacqueline Joshua, Margaret T. Mmbaga, Matthew W. Blair
Software Mentions: 7
Published: over 5 years ago

10.3390/ijms21134727

Integrative Bioinformatic Analyses of Global Transcriptome Data Decipher Novel Molecular Insights into Cardiac Anti-Fibrotic Therapies
Cited by: 16
Author(s): Maximilian Fuchs, Fabian Philipp Kreutzer, Lorenz A. Kapsner, Saskia Mitzka, Annette Just, Filippo Perbellini, Cesare M. Terracciano, Xiaoyan Ke, Robert Geffers, Christian Bogdan, Hans‐Ulrich Prokosch, Jan Fiedler, Thomas Thum, Meik Kunz
Software Mentions: 7
Published: about 6 years ago

10.1038/s41431-020-0675-z

Evaluation of CNV detection tools for NGS panel data in genetic diagnostics
Cited by: 63
Author(s): José Marcos Moreno-Cabrera, Jesús Del Valle, Elisabeth Castellanos, Lídia Feliubadaló, Marta Pineda, Joan Brunet, Eduard Serra, Gabriel Capellá, Conxi Lázaro, Bernat Gel
Software Mentions: 7
Published: about 6 years ago

10.7717/peerj.1871

Assessing migration patterns inPasserina cirisusing the world’s bird collections as an aggregated resource
Cited by: 8
Author(s): Ethan Linck, Eli S. Bridge, Jonah M. Duckles, Adolfo G. Navarro‐Sigüenza, Sievert Rohwer
Software Mentions: 7
Published: over 10 years ago

10.3389/fphys.2018.01553

High-Intensity Exercise Mitigates Cardiovascular Deconditioning During Long-Duration Bed Rest
Cited by: 21
Author(s): Martina Anna Maggioni, Paolo Castiglioni, Giampiero Merati, Katharina Brauns, Hanns‐Christian Gunga, Stefan Mendt, Oliver Opatz, Lea C. Rundfeldt, Mathias Steinach, Anika Werner, Alexander Stahn
Software Mentions: 7
Published: almost 8 years ago

10.3389/fgene.2019.00971

Assessing the Impact of Sample Heterogeneity on Transcriptome Analysis of Human Diseases Using MDP Webtool
Cited by: 15
Author(s): André Nicolau Aquime Gonçalves, Melissa Lever, Pedro Russo, Bruno Gomes-Correia, Alysson H. Urbanski, Gabriele Pollara, Mahdad Noursadeghi, Vinicius Maracaja‐Coutinho, Helder I. Nakaya
Software Mentions: 7
Published: almost 7 years ago

10.1186/s12859-017-1942-z

A modified GC-specific MAKER gene annotation method reveals improved and novel gene predictions of high and low GC content in Oryza sativa
Cited by: 17
Author(s): Megan J. Bowman, Jane A. Pulman, Tiffany L. Liu, Kevin L. Childs
Software Mentions: 7
Published: almost 9 years ago

10.1186/s12859-021-04043-5

OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons
Cited by: 4
Author(s): Jakob Willforss, Valentina Siino, Fredrik Levander
Software Mentions: 7
Published: over 5 years ago

10.7717/peerj.7863

Manx shearwater (Puffinus puffinus) rafting behaviour revealed by GPS tracking and behavioural observations
Cited by: 6
Author(s): Cerren Richards, Oliver Padget, Tim Guilford, Amanda E. Bates
Software Mentions: 7
Published: almost 7 years ago

10.1128/IAI.00147-20

Niche- and Gender-Dependent Immune Reactions in Relation to the Microbiota Profile in Pediatric Patients with Otitis Media with Effusion
Cited by: 10
Author(s): Frida Enoksson, Alicia Ruiz Rodriguez, Chikondi Peno, Carlos Balcazar Lopez, Fredrik Tjernström, Debby Bogaert, Anders P. Håkansson, Caroline Bergenfelz
Software Mentions: 7
Published: almost 6 years ago

10.7717/peerj.9493

Microbial and chemical dynamics of a toxic dinoflagellate bloom
Cited by: 9
Author(s): Nastassia V. Patin, Emily R. Brown, Gabriella Chebli, Claire Garfield, Julia Kubanek, Frank J. Stewart
Software Mentions: 7
Published: about 6 years ago

10.1002/advs.201901819

Whole‐Genome Promoter Profiling of Plasma DNA Exhibits Diagnostic Value for Placenta‐Origin Pregnancy Complications
Cited by: 25
Author(s): Zhi-Wei Guo, Fang Yang, Jun Zhang, Zhigang Zhang, Kun Li, Qi Tian, Hongyan Hou, Chenyang Xu, Qiping Lu, Zhonglu Ren, Xiaoxue Yang, Zenglu Lv, Ke Wang, Xinping Yang, Yanni Wu, Xiaobo Yang
Software Mentions: 7
Published: over 6 years ago

10.7717/peerj.7233

An artificial-vision- and statistical-learning-based method for studying the biodegradation of type I collagen scaffolds in bone regeneration systems
Cited by: 9
Author(s): Y. Robles-Bykbaev, Salvador Naya, Silvia Díaz‐Prado, D. Calle-Lopez, Vladimir Robles-Bykbaev, Luis Garzón, Clara Sanjurjo‐Rodríguez, Javier Tarrío-Saavedra
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.pone.0211601

Testing the potential of 50 kHz rat calls as a species-specific rat attractant
Cited by: 7
Author(s): Nicola B. Davidson, Jane L. Hurst
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-017-13601-y

Gut microbiome alterations in Alzheimer’s disease
Cited by: 1,108
Author(s): N. Vogt, Robert L. Kerby, Kimberly A. Dill‐McFarland, Sandra Harding, Andrew P. Merluzzi, Sterling C. Johnson, Cynthia M. Carlsson, Sanjay Asthana, Henrik Zetterberg, Kaj Blennow, Barbara B. Bendlin, Federico E. Rey
Software Mentions: 7
Published: almost 9 years ago

10.1186/s10020-019-0093-2

IgG Galactosylation status combined with MYOM2-rs2294066 precisely predicts anti-TNF response in ankylosing spondylitis
Cited by: 12
Author(s): Jing Liu, Qi Zhu, Jing Han, Hui Zhang, Yuan Li, Yanyun Ma, Dongyi He, Jianxin Gu, Xiaodong Zhou, John D. Reveille, Li Jin, Hejian Zou, Shifang Ren, Jiucun Wang
Software Mentions: 7
Published: about 7 years ago

10.7717/peerj.11894

Identification of a circRNA-miRNA-mRNA regulatory network for exploring novel therapeutic options for glioma
Cited by: 4
Author(s): Yi He, Yihong Chen, Yuxin Tong, Wenyong Long, Qing Liu
Software Mentions: 7
Published: about 5 years ago

10.3389/fmicb.2021.662159

Effect of Fecal Microbiota Transplantation Combined With Mediterranean Diet on Insulin Sensitivity in Subjects With Metabolic Syndrome
Cited by: 20
Author(s): Annefleur M. Koopen, Eduardo L. Almeida, Ilias Attaye, Julia J. Witjes, Elena Rampanelli, Soumia Majait, E. Marleen Kemper, Johannes H.M. Levels, Alinda W.M. Schimmel, Hilde Herrema, Torsten P. M. Scheithauer, Werner Frei, Lars Ove Dragsted, Bolette Hartmann, Jens J. Holst, Paul W. O’Toole, Albert K. Groen, Max Nieuwdorp
Software Mentions: 7
Published: about 5 years ago

10.3389/fgene.2020.00936

NRG1, PIP4K2A, and HTR2C as Potential Candidate Biomarker Genes for Several Clinical Subphenotypes of Depression and Bipolar Disorder
Cited by: 13
Author(s): Аnastasia Levchenko, N. Vyalova, Timur Nurgaliev, Ivan V Pozhidaev, German G. Simutkin, Н. А. Бохан, Светлана Иванова
Software Mentions: 7
Published: about 6 years ago

10.1128/AEM.01715-20

Risk Factors Associated with Carbapenemase-Producing Enterobacterales (CPE) Positivity in the Hospital Wastewater Environment
Cited by: 9
Author(s): Stacy C. Park, Hardik I. Parikh, Kasi Vegesana, Nicole Stoesser, Katie E. Barry, Shireen Meher Kotay, Sarah Dudley, Timothy E. A. Peto, Derrick W. Crook, A. Sarah Walker, Amy J Mathers
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0198311

GCalignR: An R package for aligning gas-chromatography data for ecological and evolutionary studies
Cited by: 35
Author(s): Meinolf Ottensmann, Martin Stoffel, Hazel J. Nichols, Joseph I. Hoffman
Software Mentions: 7
Published: about 8 years ago

10.1128/AEM.00646-21

Spatial and Temporal Dynamics of Prokaryotic and Viral Community Assemblages in a Lotic System (Manatee Springs, Florida)
Cited by: 8
Author(s): Kema Malki, Natalie A. Sawaya, Michael J. Tisza, Felipe H. Coutinho, Karyna Rosario, Anna J. Székely, Mya Breitbart
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0231773

Perceived socio-economic impacts of the marbled crayfish invasion in Madagascar
Cited by: 19
Author(s): Ranja Andriantsoa, Julia P. G. Jones, Vlad Achimescu, Heriniaina Randrianarison, Miary Raselimanana, Manjary Andriatsitohaina, Jeanne Rasamy, Frank Lyko
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0201751

Pancreatic cancer survival analysis defines a signature that predicts outcome
Cited by: 52
Author(s): Pichai Raman, Ravikanth Maddipati, Kian Huat Lim, Aydın Tözeren
Software Mentions: 7
Published: about 8 years ago

10.15252/msb.20177881

High‐resolution definition of humoral immune response correlates of effective immunity against <scp>HIV</scp>
Cited by: 33
Author(s): Galit Alter, Karen G. Dowell, Eric N. Brown, Todd J. Suscovich, Anastassia Mikhailova, Alison E. Mahan, Bruce D. Walker, Falk Nimmerjahn, Chris Bailey‐Kellogg, Margaret E. Ackerman
Software Mentions: 7
Published: over 8 years ago

10.15252/msb.20209652

A substrate‐based ontology for human solute carriers
Cited by: 24
Author(s): Eva Meixner, Ulrich Goldmann, Vitaly Sedlyarov, Stefania Scorzoni, Manuele Rebsamen, Enrico Gottardi, Giulio Superti‐Furga
Software Mentions: 7
Published: about 6 years ago

10.3389/fcimb.2020.00131

Dysbiosis in Peripheral Blood Mononuclear Cell Virome Associated With Systemic Lupus Erythematosus
Cited by: 4
Author(s): Gangqiang Guo, Lele Ye, Xinyu Shi, Kejing Yan, Jingjing Huang, Kangming Lin, Dong Xing, Sisi Ye, Yuqing Wu, Baoqing Li, Chaosheng Chen, Xiangyang Xue, Huidi Zhang
Software Mentions: 7
Published: over 6 years ago

10.3390/nu10091248

Effect of Whey Protein Supplementation on Physical Performance and Body Composition in Army Initial Entry Training Soldiers
Cited by: 15
Author(s): Jeremy McAdam, Kaitlin McGinnis, Darren T. Beck, Cody T. Haun, Matthew A. Romero, Petey W. Mumford, Paul A. Roberson, Kaelin C. Young, Keith R. Lohse, Lockwood Cm, Michael D. Roberts, Jo Ellen M. Sefton
Software Mentions: 7
Published: almost 8 years ago

10.1007/s00401-021-02263-w

Distinct amyloid-β and tau-associated microglia profiles in Alzheimer’s disease
Cited by: 143
Author(s): Emma Gerrits, Nieske Brouwer, Susanne M. Kooistra, Maya E. Woodbury, Yannick Vermeiren, Mirjam Lambourne, Jan Mulder, Markus P. Kummer, Thomas Möller, Knut Biber, Wilfred F. A. den Dunnen, Peter Paul De Deyn, Bart J. L. Eggen, Erik Boddeke
Software Mentions: 7
Published: over 5 years ago

10.3390/genes11020198

NF-YA Overexpression in Lung Cancer: LUAD
Cited by: 17
Author(s): Eugenia Bezzecchi, Mirko Ronzio, Valentina Semeghini, Valentina Andrioletti, Roberto Mantovani, Diletta Dolfini
Software Mentions: 7
Published: over 6 years ago

10.3389/fmicb.2019.00281

Drivers of Regional Bacterial Community Structure and Diversity in the Northwest Atlantic Ocean
Cited by: 36
Author(s): Jackie Zorz, Ciara Willis, A. Comeau, Morgan G. I. Langille, Catherine L. Johnson, William K. W. Li, Julie LaRoche
Software Mentions: 7
Published: over 7 years ago

10.3390/nu12113269

Dietary Behaviors in the Post-Lockdown Period and Its Effects on Dietary Diversity: The Second Stage of a Nutrition Survey in a Longitudinal Chinese Study in the COVID-19 Era
Cited by: 54
Author(s): Jian Zhang, Aihua Zhao, Yalei Ke, Shanshan Huo, Yang Ma, Yumei Zhang, Zhiguo Ren, Zhongyu Li, Keyang Liu
Software Mentions: 7
Published: almost 6 years ago

10.3390/vaccines7030113

TIV Vaccination Modulates Host Responses to Influenza Virus Infection that Correlate with Protection against Bacterial Superinfection
Cited by: 5
Author(s): Angela Choi, Ioanna Christopoulou, Xavier Saelens, Adolfo Garcı́a-Sastre, Michael Schotsaert
Software Mentions: 7
Published: almost 7 years ago

10.1007/s00572-020-01001-6

Phosphate availability and ectomycorrhizal symbiosis with Pinus sylvestris have independent effects on the Paxillus involutus transcriptome
Cited by: 6
Author(s): Christina Paparokidou, Jonathan R. Leake, David J. Beerling, Stephen A. Rolfe
Software Mentions: 7
Published: almost 6 years ago

10.1093/g3journal/jkab025

Nested association mapping reveals the genetic architecture of spike emergence and anthesis timing in intermediate wheatgrass
Cited by: 10
Author(s): Kayla R. Altendorf, Steven R. Larson, Lee R. DeHaan, Jared Crain, Jeffrey L. Neyhart, Kevin M. Dorn, James A. Anderson
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0237079

A core phyllosphere microbiome exists across distant populations of a tree species indigenous to New Zealand
Cited by: 17
Author(s): Anya Sophia Noble, Stevie Noe, Michael J. Clearwater, Charles K. Lee
Software Mentions: 7
Published: about 6 years ago

10.1186/s13195-020-00709-z

TREM2 Alzheimer’s variant R47H causes similar transcriptional dysregulation to knockout, yet only subtle functional phenotypes in human iPSC-derived macrophages
Cited by: 25
Author(s): Hazel Hall‐Roberts, Devika Agarwal, Juliane Obst, Thomas B. Smith, Jimena Monzón‐Sandoval, Elena Di Daniel, Caleb Webber, William James, Emma Mead, John B. Davis, Sally A. Cowley
Software Mentions: 7
Published: almost 6 years ago

10.3389/fcell.2019.00283

A Combined Mass Spectrometry and Data Integration Approach to Predict the Mitochondrial Poly(A) RNA Interacting Proteome
Cited by: 2
Author(s): Selma L van Esveld, Şirin Cansız-Arda, Fenna Hensen, Robin van der Lee, Martijn Huynen, Johannes N. Spelbrink
Software Mentions: 7
Published: almost 7 years ago

10.7717/peerj.4626

Surface display for metabolic engineering of industrially important acetic acid bacteria
Cited by: 4
Author(s): Marshal Blank, Paul Schweiger
Software Mentions: 7
Published: over 8 years ago

10.1186/s13195-020-00733-z

Exploring the role of RALYL in Alzheimer’s disease reserve by network-based approaches
Cited by: 4
Author(s): Yixuan Zhang, Jiali Wang, Xiaoquan Liu, Haochen Liu
Software Mentions: 7
Published: almost 6 years ago

10.3389/fcell.2021.648279

Prognostic Value of a Novel Signature With Nine Hepatitis C Virus-Induced Genes in Hepatic Cancer by Mining GEO and TCGA Databases
Cited by: 5
Author(s): Jianming Wei, Bo Wang, Xibo Gao, Daqing Sun
Software Mentions: 7
Published: about 5 years ago

10.3390/antiox10030448

Intra-Individual Variation and Reliability of Biomarkers of the Antioxidant Defense System by Considering Dietary and Lifestyle Factors in Premenopausal Women
Cited by: 2
Author(s): Alexandra Jungert, Jan Frank
Software Mentions: 7
Published: over 5 years ago

10.1186/s12864-021-07744-6

The effect of methanol fixation on single-cell RNA sequencing data
Cited by: 19
Author(s): Xinlei Wang, Yu Liu, Angela Ruohao Wu
Software Mentions: 7
Published: about 5 years ago

10.3389/fcell.2021.688798

QSOX2 Is an E2F1 Target Gene and a Novel Serum Biomarker for Monitoring Tumor Growth and Predicting Survival in Advanced NSCLC
Cited by: 3
Author(s): Yaqi Li, Mei Liu, Zhuoxian Zhang, Libin Deng, Zhenyu Zhai, Hua Liu, Yiting Wang, Cheng Zhang, Jianping Xiong, Chao Shi
Software Mentions: 7
Published: about 5 years ago

10.1155/2020/7658342

A Comprehensive Network Pharmacology-Based Strategy to Investigate Multiple Mechanisms of HeChan Tablet on Lung Cancer
Cited by: 6
Author(s): Zhenjie Zhuang, Qianying Chen, Cihui Huang, Junping Wen, Huayi Huang, Zhanhua Liu
Software Mentions: 7
Published: over 6 years ago

10.3389/fpls.2021.695867

Comparing Exogenous Methods to Induce Plant-Resistance Against a Bark-Feeding Insect
Cited by: 3
Author(s): Yayuan Chen, Adriana Puentes, Christer Björkman, Agnès Brosset, Helena Bylund
Software Mentions: 7
Published: about 5 years ago

10.1002/1878-0261.12911

LncRNA NKX2‐1‐AS1 promotes tumor progression and angiogenesis via upregulation of SERPINE1 expression and activation of the VEGFR‐2 signaling pathway in gastric cancer
Cited by: 39
Author(s): Fei Teng, Ju‐Xiang Zhang, Yi Chen, Xiaodong Shen, Chang Su, Yanjiao Guo, Pu‐Hua Wang, Chencheng Shi, Ming Lei, Yiou Cao, Shao‐Qun Liu
Software Mentions: 7
Published: over 5 years ago

10.3390/nu13020303

Investigation of Iron and Zinc Concentrations in Human Milk in Correlation to Maternal Factors: An Observational Pilot Study in Poland
Cited by: 7
Author(s): Agnieszka Bzikowska‐Jura, Piotr Sobieraj, Magdalena Michalska-Kacymirow, Aleksandra Wesołowska
Software Mentions: 7
Published: over 5 years ago

10.2807/1560-7917.ES.2017.22.4.30452

Widespread activity of multiple lineages of Usutu virus, western Europe, 2016
Cited by: 105
Author(s): Dániel Cadar, Renke Lühken, Henk P. van der Jeugd, Mutien-Marie Garigliany, Ute Ziegler, Markus Keller, Jennifer Lahoreau, Lars Lachmann, Norbert Becker, Marja Kik, Bas B. Oude Munnink, Stefan Bosch, Egbert Tannich, Annick Lindén, Volker Schmidt, Marion Koopmans, Jolianne M. Rijks, Daniël Desmecht, Martin H. Groschup, Chantal Reusken, Jonas Schmidt‐Chanasit
Software Mentions: 7
Published: over 9 years ago

10.1186/s12864-019-6047-9

Genome-wide effects of social status on DNA methylation in the brain of a cichlid fish, Astatotilapia burtoni
Cited by: 9
Author(s): Austin T. Hilliard, Dan Xie, Zhihai Ma, M Snyder, Russell D. Fernald
Software Mentions: 7
Published: almost 7 years ago

10.3389/fpls.2021.695415

Leaf Epidermis: The Ambiguous Symplastic Domain
Cited by: 0
Author(s): Olga V. Voitsekhovskaja, Anna N. Melnikova, Kirill N. Demchenko, Alexandra N. Ivanova, V. A. Dmitrieva, Anastasiia I. Maksimova, Gertrud Lohaus, A. D. Tomos, E.V. Tyutereva, Olga Koroleva
Software Mentions: 7
Published: about 5 years ago

10.3390/nu12113444

Fructose-Induced Intestinal Microbiota Shift Following Two Types of Short-Term High-Fructose Dietary Phases
Cited by: 31
Author(s): Julia Beisner, Anita Gonzalez‐Granda, Maryam Basrai, Antje Damms-Machado, Stephan C. Bischoff
Software Mentions: 7
Published: almost 6 years ago

10.3390/ijms21176028

Developmental Methylome of the Medicinal Plant Catharanthus roseus Unravels the Tissue-Specific Control of the Monoterpene Indole Alkaloid Pathway by DNA Methylation
Cited by: 12
Author(s): Thomas Dugé de Bernonville, Stéphane Maury, Alain Delaunay, Christian Daviaud, Cristian Chaparro, Jörg Tost, Sarah E. O’Connor, Vincent Courdavault
Software Mentions: 7
Published: about 6 years ago

10.3390/ijms21124236

Differential Urinary Proteome Analysis for Predicting Prognosis in Type 2 Diabetes Patients with and without Renal Dysfunction
Cited by: 25
Author(s): Hee‐Sung Ahn, Jong Ho Kim, Hee Jong Jeong, Jeesuk Yu, Jeonghun Yeom, Sang Heon Song, Sang Soo Kim, In Joo Kim, Kyunggon Kim
Software Mentions: 7
Published: about 6 years ago

10.3389/fphys.2021.609770

Construction of Prognostic Risk Prediction Model of Oral Squamous Cell Carcinoma Based on Nine Survival-Associated Metabolic Genes
Cited by: 10
Author(s): Zhun Huang, Yangyang Yao, Ting‐Yu Chen, Yifan Zhao, Chao Zhang, Yu‐Ming Niu
Software Mentions: 7
Published: over 5 years ago

10.3390/nu12092569

Influence of Maternal Age and Gestational Age on Breast Milk Antioxidants During the First Month of Lactation
Cited by: 17
Author(s): Andrea Gila-Díaz, Gloria Herranz Carrillo, Silvia Cañas, Miguel Sáenz de Pipaón, José Martínez‐Orgado, Pilar Rodríguez-Rodríguez, Ángel L. López de Pablo, María Á. Martín-Cabrejas, David Ramiro-Cortijo, Silvia M. Arribas
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0238916

Structural field margin characteristics affect the functional traits of herbaceous vegetation
Cited by: 4
Author(s): Cian Blaix, Anna-Camilla Moonen
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12864-017-4429-4

Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains
Cited by: 27
Author(s): Luis A. Amador, Aline Primot, Édouard Cadieu, Alain Roulet, Frédérique Barloy-Hubler
Software Mentions: 7
Published: over 8 years ago

10.3389/fphys.2017.00917

Uncertainty Quantification Reveals the Importance of Data Variability and Experimental Design Considerations for in Silico Proarrhythmia Risk Assessment
Cited by: 66
Author(s): Kelly C. Chang, Sara Dutta, Gary R. Mirams, Kylie A. Beattie, Jiansong Sheng, Phu N. Tran, Min Wu, Wendy Wu, Thomas Colatsky, David G. Strauss, Zhihua Li
Software Mentions: 7
Published: almost 9 years ago

10.7717/peerj.2574

YUCCAauxin biosynthetic genes are required for Arabidopsis shade avoidance
Cited by: 60
Author(s): Patricia Müller-Moulé, Kazunari Nozue, Melissa L Pytlak, Christine M. Palmer, Michael F. Covington, Andreah D. Wallace, Stacey L. Harmer, Julin Maloof
Software Mentions: 7
Published: almost 10 years ago

10.1186/s42523-021-00117-0

Gut microbiome is affected by gut region but robust to host physiological changes in captive active-season ground squirrels
Cited by: 3
Author(s): Kirsten Grond, Courtney C. Kurtz, Jasmine J. Hatton, Michelle M. Sonsalla, Khrystyne N. Duddleston
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0234848

Assessment of varying changes of vegetation and the response to climatic factors using GIMMS NDVI3g on the Tibetan Plateau
Cited by: 12
Author(s): Yuke Zhou, Jiangwen Fan, Xiaoying Wang
Software Mentions: 7
Published: about 6 years ago

10.3390/ijms22136726

Analysis of the Role of FRMD5 in the Biology of Papillary Thyroid Carcinoma
Cited by: 4
Author(s): Agata M. Gaweł, Maciej Ratajczak, Ewa Gajda, Małgorzata Grzanka, Agnieszka Paziewska, Marta Cieślicka, Maria Kulecka, Małgorzata Oczko-Wojciechowska, Marlena Godlewska
Software Mentions: 7
Published: about 5 years ago

10.1038/s41388-021-01876-5

The FLI portion of EWS/FLI contributes a transcriptional regulatory function that is distinct and separable from its DNA-binding function in Ewing sarcoma
Cited by: 12
Author(s): Megann A. Boone, Cenny Taslim, Julie Crow, Julia Selich‐Anderson, Andrea K. Byrum, Iftekhar A. Showpnil, Benjamin D. Sunkel, Meng Wang, Benjamin Z. Stanton, Emily R. Theisen, Stephen L. Lessnick
Software Mentions: 7
Published: about 5 years ago

10.1007/s10841-021-00327-6

Consistent oviposition preferences of the Duke of Burgundy butterfly over 14 years on a chalk grassland reserve in Bedfordshire, UK
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Author(s): Matthew Hayes, Esme Ashe‐Jepson, GE Hitchcock, Richard Knock, Cbh Lucas, Andrew J. Bladon, Edgar C. Turner
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0237893

The response of culturally important plants to experimental warming and clipping in Pakistan Himalayas
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Author(s): Saira Karimi, Muhammad Ali Nawaz, Saadia Naseem, Ahmed Akrem, Hussain Ali, Olivier Dangles, Zahid Ali
Software Mentions: 7
Published: over 5 years ago

10.1093/jncics/pkab026

Histopathological Growth Patterns and Survival After Resection of Colorectal Liver Metastasis: An External Validation Study
Cited by: 24
Author(s): Diederik J. Höppener, Boris Galjart, Pieter M. H. Nierop, Florian E. Buisman, Eric P. van der Stok, Robert R.J. Coebergh van den Braak, Martin J. van Amerongen, Vinod P. Balachandran, William R. Jarnagin, T. Peter Kingham, Michail Doukas, Jinru Shia, Irıs D. Nagtegaal, Peter B. Vermeulen, Bas Groot Koerkamp, Dirk J. Grünhagen, Johannes H. W. de Wilt, Michael I. D’Angelica, Cornelis Verhoef
Software Mentions: 7
Published: over 5 years ago

10.3389/fped.2021.654596

Adverse Maternal and Neonatal Outcomes in Women With Elevated Intrapartum Temperature Complicated by Histological Chorioamnionitis at Term: A Propensity-Score Matched Study
Cited by: 2
Author(s): Yingzhou Ge, Chen Zhang, Yanqing Cai, He‐Feng Huang
Software Mentions: 7
Published: over 5 years ago

10.7717/peerj.6687

A longitudinal study of the faecal microbiome and metabolome of periparturient mares
Cited by: 11
Author(s): Shebl E. Salem, Rachael Hough, Chris Probert, Thomas W. Maddox, Philipp Antczak, Julian M. Ketley, Nicola Williams, Sarah J. Stoneham, Debra Archer
Software Mentions: 7
Published: over 7 years ago

10.3389/fped.2020.623184

Timing of Newborn Blood Collection Alters Metabolic Disease Screening Performance
Cited by: 13
Author(s): Gang Peng, Yishuo Tang, Tina M. Cowan, Hongyu Zhao, Curt Scharfe
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0249735

Mix and match: Patchwork domain evolution of the land plant-specific Ca2+-permeable mechanosensitive channel MCA
Cited by: 10
Author(s): Kanae Nishii, Michael Möller, Hidetoshi Iida
Software Mentions: 7
Published: over 5 years ago

10.1186/s12970-018-0262-7

Estimation of energy balance and training volume during Army Initial Entry Training
Cited by: 20
Author(s): Jeremy McAdam, Kaitlin McGinnis, Rian Ory, Kaelin C. Young, Andrew D. Frugé, Michael D. Roberts, JoEllen M. Sefton
Software Mentions: 7
Published: over 8 years ago

10.3389/fgene.2020.00396

Single-Cell Transcriptomic Analysis Reveals Mitochondrial Dynamics in Oocytes of Patients With Polycystic Ovary Syndrome
Cited by: 34
Author(s): Lingbin Qi, Boxuan Liu, Xian Chen, Qiwei Liu, Wanqiong Li, Bo Lv, Xiaoyu Xu, Lu Wang, Qiao Zeng, Jinfeng Xue, Zhigang Xue
Software Mentions: 7
Published: over 6 years ago

10.3389/fonc.2021.709796

Helicobacter pylori Infection–Related Long Non-Coding RNA Signatures Predict the Prognostic Status for Gastric Cancer Patients
Cited by: 7
Author(s): Zhuoyuan Xin, Luping Zhang, Mingqing Liu, Yachen Wang, Yingli Zhang, Wenjie Zhao, Yongxiao Sun, Lei Shi, Na Xu, Nan Zhang, Hong Xu
Software Mentions: 7
Published: about 5 years ago

10.3389/fonc.2021.660242

Identification and Validation of a Five-Gene Signature Associated With Overall Survival in Breast Cancer Patients
Cited by: 6
Author(s): Xiaolong Wang, Chen Li, Tong Chen, Wenhao Li, Hanwen Zhang, Dong Zhang, Ying Liu, Dianwen Han, Yaming Li, Zheng Li, Dan Luo, Ning Zhang, Qifeng Yang
Software Mentions: 7
Published: about 5 years ago

10.3390/ijerph18168514

Younger Age in Adolescent Pregnancies Is Associated with Higher Risk of Adverse Outcomes
Cited by: 6
Author(s): María de la Calle, José Luis Bartha, Cristina M. López, M Turiel, N. Arias Martínez, Silvia M. Arribas, David Ramiro-Cortijo
Software Mentions: 7
Published: about 5 years ago

10.3389/fphar.2021.688528

Explore the Usefulness of Concurrent Chemotherapy in Stage II Nasopharyngeal Carcinoma: A Retrospective Study
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Author(s): Peijing Li, YuLin Lai, Fang He, Yuan-Yuan Chen, Zhuo‐Sheng Gu, Wei Luo, Qun Zhang
Software Mentions: 7
Published: almost 5 years ago

10.7717/peerj.6902

Optimizing de novo genome assembly from PCR-amplified metagenomes
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Author(s): Simon Roux, Gareth Trubl, Danielle Goudeau, Nandita Nath, Estelle Couradeau, Nathan A. Ahlgren, Yuanchao Zhan, David Marsan, Feng Chen, Jed A. Fuhrman, Trent Northen, Matthew B. Sullivan, V. I. Rich, Rex R. Malmstrom, Emiley A. Eloe‐Fadrosh
Software Mentions: 7
Published: over 7 years ago

10.3390/ijerph18158115

Longitudinal Associations of Marital, Parenting, and Employment Transitions with Weight Gain in a Multi-Ethnic Asian Population Aged 21 Years and Above
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Author(s): Clare Whitton, Yvonne Hui Min Wong, Rob M. van Dam
Software Mentions: 7
Published: about 5 years ago

10.3389/fonc.2021.654185

Overexpression of GINS4 Is Associated With Tumor Progression and Poor Survival in Hepatocellular Carcinoma
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Author(s): Ziying Zhang, Peng Chen, Hui Xie, Peiguo Cao
Software Mentions: 7
Published: over 5 years ago

10.3390/ijerph17217771

The Quality of Work Index and the Quality of Employment Index: A Multidimensional Approach of Job Quality and Its Links to Well-Being at Work
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Author(s): Georges Steffgen, Philipp Sischka, Martha Fernandez de Henestrosa
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12915-021-01134-w

Comparative analysis reveals within-population genome size variation in a rotifer is driven by large genomic elements with highly abundant satellite DNA repeat elements
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Author(s): Claus‐Peter Stelzer, Julie Blommaert, Ann‐Marie Waldvogel, Maria Pichler, Bette Hecox-Lea, David Welch
Software Mentions: 7
Published: almost 5 years ago

10.3389/fgene.2020.590660

Identification of Key Genes and Potential New Biomarkers for Ovarian Aging: A Study Based on RNA-Sequencing Data
Cited by: 14
Author(s): Lingwei Ma, Huan Lu, Runhua Chen, Meng Wu, Yan Jin, Jinjin Zhang, Shixuan Wang
Software Mentions: 7
Published: almost 6 years ago

10.1186/s40793-020-00365-8

Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond
Cited by: 14
Author(s): Jessica Chopyk, Daniel J. Nasko, Sarah Allard, Anthony Bui, Mihai Pop, Emmanuel F. Mongodin, Amy R. Sapkota
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0258157

Dynamically expressed genes provide candidate viability biomarkers in a model coccidian
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Author(s): Matthew S. Tucker, Celia O’Brien, Mark C. Jenkins, Benjamin M. Rosenthal
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0232306

A new automated chilled adult release system for the aerial distribution of sterile male tsetse flies
Cited by: 4
Author(s): Caroline K. Mirieri, Gratian N. Mutika, Jimmy Bruno, Momar Talla Seck, Baba Sall, Andrew G. Parker, Monique M. van Oers, Marc J. B. Vreysen, Jérémy Bouyer, Adly M. M. Abd-Alla
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0231530

Comparing self- and hetero-metacognition in the absence of verbal communication
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Author(s): Laurène Vuillaume, Jean‐Rémy Martin, Jérôme Sackur, Axel Cleeremans
Software Mentions: 7
Published: over 6 years ago

10.18632/aging.103671

Target RNA modification for epigenetic drug repositioning in neuroblastoma: computational omics proximity between repurposing drug and disease
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Author(s): Pei Ma, Lifeng Yue, Sen Zhang, Da‐Cheng Hao, Zhihong Wu, Lijia Xu, Guanhua Du, Pei‐Gen Xiao
Software Mentions: 7
Published: almost 6 years ago

10.1186/s40168-019-0782-7

MICHELINdb: a web-based tool for mining of helminth-microbiota interaction datasets, and a meta-analysis of current research
Cited by: 16
Author(s): Riccardo Scotti, Stuart Southern, Christine J. Boinett, Timothy Jenkins, Alba Cortés, Cinzia Cantacessi
Software Mentions: 7
Published: over 6 years ago

10.1186/s12902-021-00732-7

Incidence and prognostic factors of primary thyroid lymphoma and construction of prognostic models for post-chemotherapy and postoperative patients: a population-based study
Cited by: 1
Author(s): Nan Xiang, Fangyuan Dong, Xuebing Zhan, Shuhan Wang, Junjie Wang, Entao Sun, Bing Chen
Software Mentions: 7
Published: over 5 years ago

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