Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-015-0831-x

https://doi.org/10.1186/s13059-015-0831-x

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

Cited by: 1,430
Author(s): Nicolas Servant, Nelle Varoquaux, Bryan R. Lajoie, Éric Viara, Chong Jian Chen, Jean-Philippe Vert, Edith Heard, Job Dekker, Emmanuel Barillot
Published: about 9 years ago

Software Mentions 7

cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
pypi: Cython
The Cython compiler for writing C extensions in the Python language.
Papers that mentioned: 118
pypi: grid
Volumetric data module
Papers that mentioned: 137
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: pysam
Package for reading, manipulating, and writing genomic data
Papers that mentioned: 130
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071