cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1111/2041-210X.13422

nosoi: A stochastic agent‐based transmission chain simulation framework in <scp>r</scp>
Cited by: 19
Author(s): Sébastian Lequime, Paul Bastide, Simon Dellicour, Philippe Lemey, Guy Baele
Software Mentions: 8
Published: over 6 years ago

10.1161/HYPERTENSIONAHA.121.17403

Blood Pressure Determinants of Cerebral White Matter Hyperintensities and Microstructural Injury: UK Biobank Cohort Study
Cited by: 13
Author(s): Karolina Wartolowska, Alastair Webb
Software Mentions: 8
Published: about 5 years ago

10.1101/2020.12.03.20242032

Cortical Mechanisms of Visual Hypersensitivity in Women at Risk for Chronic Pelvic Pain
Cited by: 0
Author(s): Matthew J. Kmiecik, Frank F. Tu, Rebecca L. Silton, Katlyn E Dillane, Genevieve E. Roth, Steven E. Harte, Kevin M. Hellman
Software Mentions: 8
Published: almost 6 years ago

10.1007/s00248-019-01414-7

Tropical Rainforest Restoration Plantations Are Slow to Restore the Soil Biological and Organic Carbon Characteristics of Old Growth Rainforest
Cited by: 7
Author(s): Mark Bonner, Diane E. Allen, Richard Brackin, Timothy Smith, Tom Lewis, Luke P. Shoo, Susanne Schmidt
Software Mentions: 8
Published: about 7 years ago

10.1128/mSystems.00152-21

Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal Piglets
Cited by: 2
Author(s): Shriram Patel, Abel A. Vlasblom, Koen M. Verstappen, Aldert Zomer, Ad C. Fluit, Malbert R. C. Rogers, Jaap A. Wagenaar, Marcus J. Claesson, Birgitta Duim
Software Mentions: 8
Published: about 5 years ago

10.1128/mSystems.01153-20

Bacterial Communities in Concrete Reflect Its Composite Nature and Change with Weathering
Cited by: 8
Author(s): E. Anders Kiledal, Jessica L. Keffer, Julia A. Maresca
Software Mentions: 8
Published: over 5 years ago

10.3390/microorganisms9061153

Variation in Human Milk Composition Is Related to Differences in Milk and Infant Fecal Microbial Communities
Cited by: 30
Author(s): Ryan M. Pace, Janet E. Williams, Bianca Robertson, Kimberly A. Lackey, Courtney L. Meehan, William J. Price, James A. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Debela G. Kita, Linda J. Kvist, Gloria E. Otoo, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Mark A. McGuire, Lars Bode, Michelle K. McGuire
Software Mentions: 8
Published: over 5 years ago

10.1128/mSystems.01356-20

Spinal Cord Injury Changes the Structure and Functional Potential of Gut Bacterial and Viral Communities
Cited by: 26
Author(s): Jingjie Du, Ahmed A. Zayed, Kristina A. Kigerl, Kylie Zane, Matthew B. Sullivan, Phillip G. Popovich
Software Mentions: 8
Published: over 5 years ago

10.1186/s12974-020-01931-0

Effects of long-term and brain-wide colonization of peripheral bone marrow-derived myeloid cells in the CNS
Cited by: 28
Author(s): Lindsay A. Hohsfield, Allison R. Najafi, Yasamine Ghorbanian, Neelakshi Soni, Edna E. Hingco, Sung Jin Kim, Ayer Darling Jue, Vivek Swarup, Mathew A. Inlay, Kim N. Green
Software Mentions: 8
Published: about 6 years ago

10.3390/microorganisms9061326

Root-Associated Bacterial Community Shifts in Hydroponic Lettuce Cultured with Urine-Derived Fertilizer
Cited by: 5
Author(s): Thijs Van Gerrewey, Christophe El‐Nakhel, Stefania De Pascale, Jolien De Paepe, Peter Clauwaert, Frederiek‐Maarten Kerckhof, Nico Boon, Danny Geelen
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-021-99046-w

Using fecal immunochemical tubes for the analysis of the gut microbiome has the potential to improve colorectal cancer screening
Cited by: 7
Author(s): Kertu Liis Krigul, Oliver Aasmets, Kreete Lüll, Tõnis Org, Elin Org
Software Mentions: 8
Published: about 5 years ago

10.1093/molbev/msab166

ggtreeExtra: Compact Visualization of Richly Annotated Phylogenetic Data
Cited by: 101
Author(s): Shuaimei Xu, Zhigang Dai, Pingfan Guo, Xiaocong Fu, Shanshan Liu, Lang Zhou, Wenli Tang, Tingze Feng, Meijun Chen, Li Zhan, Tianzhi Wu, Erqiang Hu, Yong Jiang, Xiaochen Bo, Guangchuang Yu
Software Mentions: 8
Published: over 5 years ago

10.1093/molbev/msaa057

Genome Architecture Facilitates Phenotypic Plasticity in the Honeybee (Apis mellifera)
Cited by: 30
Author(s): Elizabeth J. Duncan, Megan Leask, Peter K. Dearden
Software Mentions: 8
Published: over 6 years ago

10.1186/s12870-019-2182-3

A comparative gene co-expression analysis using self-organizing maps on two congener filmy ferns identifies specific desiccation tolerance mechanisms associated to their microhabitat preference
Cited by: 9
Author(s): Enrique Ostria‐Gallardo, Giovanni Larama, Graciela Berríos, Ana Fallard, Ana Gutiérrez-Moraga, Ingo Ensminger, León A. Bravo
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-021-89065-y

Exposure to airborne bacteria depends upon vertical stratification and vegetation complexity
Cited by: 24
Author(s): Jake M. Robinson, Christian Cando‐Dumancela, Rachael E. Antwis, Ross Cameron, Craig Liddicoat, Ravin Poudel, Philip Weinstein, Martin F. Breed
Software Mentions: 8
Published: over 5 years ago

10.1093/molbev/msab029

Herbicide Selection Promotes Antibiotic Resistance in Soil Microbiomes
Cited by: 56
Author(s): Hanpeng Liao, Xi Li, Qiue Yang, Yudan Bai, Peng Cui, Chang Wen, Chen Liu, Zhi Chen, Jiahuan Tang, Jiangang Che, Zhen Yu, Stefan Geisen, Shungui Zhou, Ville‐Petri Friman, Yong‐Guan Zhu
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-021-88139-1

Age biases the judgment rather than the perception of an ambiguous figure
Cited by: 1
Author(s): Ambroos Brouwer, Xuxi Jin, Aisha Humaira Waldi, Steven Verheyen
Software Mentions: 8
Published: over 5 years ago

10.1016/j.molcel.2021.03.041

DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network
Cited by: 28
Author(s): Colin M. Hammond, Hongyu Bao, Ivo A. Hendriks, Massimo Carraro, Alberto García-Nieto, Yanhong Liu, Nazaret Reverón-Gómez, Christos Spanos, Liu Chen, Juri Rappsilber, Michael L. Nielsen, Dinshaw J. Patel, Hongda Huang, Anja Groth
Software Mentions: 8
Published: over 5 years ago

10.1016/j.molcel.2019.01.009

Unravelling Intratumoral Heterogeneity through High-Sensitivity Single-Cell Mutational Analysis and Parallel RNA Sequencing
Cited by: 195
Author(s): Alba Rodríguez-Meira, Gemma Buck, Sally-Ann Clark, Benjamin Povinelli, Verónica Alcolea, Eleni Louka, Simon J. McGowan, Angela Hamblin, Nikolaos Sousos, Nikolaos Barkas, Alice Giustacchini, Bethan Psaila, Sten Eirik W. Jacobsen, Supat Thongjuea, Adam J. Mead
Software Mentions: 8
Published: over 7 years ago

10.1038/s41598-021-86529-z

Impact of land cover and landfills on the breeding effect and nest occupancy of the white stork in Poland
Cited by: 12
Author(s): Joanna T. Białas, Łukasz Dylewski, Andrzej Dylik, Tomasz Janiszewski, Ireneusz Kaługa, Tomek Królak, Robert Kruszyk, Krzysztof Pawlukojć, Zuzanna Pestka, M. Polakowski, Adam Zbyryt, Marcin Tobółka
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-021-83888-5

A novel approach for microRNA in situ hybridization using locked nucleic acid probes
Cited by: 6
Author(s): Isabella Worlewenut Paulsen, Micheal Bzorek, John Elmerdahl Olsen, Birgitte Grum-Schwensen, Jesper T. Troelsen, Ole Birger Pedersen
Software Mentions: 8
Published: over 5 years ago

10.2196/jmir.5461

What Are We Looking for in Computer-Based Learning Interventions in Medical Education? A Systematic Review
Cited by: 60
Author(s): Tiago Taveira-Gomes, Patrícia Ferreira, Isabel Taveira-Gomes, Mílton Severo, Manuela Ferreira
Software Mentions: 8
Published: about 10 years ago

10.7717/peerj.10696

Rapid relative increase of crustose coralline algae following herbivore exclusion in a reef of El Salvador
Cited by: 1
Author(s): Xochitl E. Elías Ilosvay, Johanna Segovia, Sebastian C. A. Ferse, Walter Ernesto Elias, Christian Wild
Software Mentions: 8
Published: over 5 years ago

10.7717/peerj.11983

Identifying transcript 5′ capped ends in Plasmodium falciparum
Cited by: 2
Author(s): Philip Shaw, Jittima Piriyapongsa, Pavita Kaewprommal, Chayaphat Wongsombat, Chadapohn Chaosrikul, Krirkwit Teeravajanadet, Manon Boonbangyang, Chairat Uthaipibull, Sumalee Kamchonwongpaisan, Sissades Tongsima
Software Mentions: 8
Published: about 5 years ago

10.7717/peerj.8807

Evaluation of δ15N analysis to trace the origin of Diaphorina citri (Hemiptera: Liviidae) to citrus orchard fertilization management
Cited by: 1
Author(s): Francesc Gómez-Marco, Andrew Yoshimoto, W. Evan Braswell, Richard Stouthamer
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-020-61643-6

Whole genome analysis identifies the association of TP53 genomic deletions with lower survival in Stage III colorectal cancer
Cited by: 7
Author(s): Xia Li, Paul Van Hummelen, Matthew Kubit, Ho‐Joon Lee, John Bell, Susan M. Grimes, Christina Wood-Bouwens, Stephanie Greer, Tyler Barker, Derrick S. Haslem, James M. Ford, Gail Fulde, Hanlee P. Ji, Lincoln Nadauld
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-019-55706-6

Tailings microbial community profile and prediction of its functionality in basins of tungsten mine
Cited by: 26
Author(s): Ana Paula Chung, Carina Coimbra, Pedro Farias, Romeu Francisco, Rita Branco, Francisco Veiga Simão, Érico Rodrigues Gomes, Alcides Pereira, Maria Cristina Vila, António Fiúza, Martin Steen Mortensen, Søren J. Sørensen, Paula V. Morais
Software Mentions: 8
Published: almost 7 years ago

10.7717/peerj.10682

Identification of the hub genes in gastric cancer through weighted gene co-expression network analysis
Cited by: 7
Author(s): Chunyang Li, Haopeng Yu, Yajing Sun, Xiaoxi Zeng, Wei Zhang
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-017-09084-6

Taxonomic bias in biodiversity data and societal preferences
Cited by: 397
Author(s): Julien Troudet, Philippe Grandcolas, Amandine Blin, Régine Vignes-Lebbe, Frédéric Legendre
Software Mentions: 8
Published: about 9 years ago

10.1038/s41598-017-09064-w

Facile single-stranded DNA sequencing of human plasma DNA via thermostable group II intron reverse transcriptase template switching
Cited by: 27
Author(s): Douglas C. Wu, Alan M. Lambowitz
Software Mentions: 8
Published: about 9 years ago

10.1038/srep46658

Metabolism dysregulation induces a specific lipid signature of nonalcoholic steatohepatitis in patients
Cited by: 148
Author(s): Franck Chiappini, Audrey Coilly, Hanane Kadar, Philippe Gual, Albert Tran, Christophe Desterke, Didier Samuel, Jean‐Charles Duclos‐Vallée, David Touboul, Justine Bertrand‐Michel, Alain Brunelle, Catherine Guettier, François Le Naour
Software Mentions: 8
Published: over 9 years ago

10.7717/peerj.8667

Element concentrations in pelagicSargassumalong the Mexican Caribbean coast in 2018-2019
Cited by: 78
Author(s): Rosa E. Rodríguez-Martínez, Priyadarsi D. Roy, Nuria Torrescano-Valle, Nancy Cabañillas-Terán, Silvia Carrillo‐Domínguez, Ligia Collado‐Vides, Marta García-Sánchez, Brigitta I. van Tussenbroek
Software Mentions: 8
Published: over 6 years ago

10.1038/srep35903

Genome-wide methylation analysis identified sexually dimorphic methylated regions in hybrid tilapia
Cited by: 59
Author(s): Zi Yi Wan, Jun Xia, Grace Lin, Le Wang, Valerie Chun Ling Lin, Gen Hua Yue
Software Mentions: 8
Published: almost 10 years ago

10.1371/journal.pgen.1008515

Dynamic and regulated TAF gene expression during mouse embryonic germ cell development
Cited by: 15
Author(s): Megan A. Gura, Maria M. Mikedis, Kimberly A. Seymour, Dirk G. de Rooij, David C. Page, Richard N. Freiman
Software Mentions: 8
Published: almost 7 years ago

10.18632/oncotarget.6793

Annexin A1 sustains tumor metabolism and cellular proliferation upon stable loss of HIF1A
Cited by: 12
Author(s): Nadine Rohwer, Fabian Bindel, Christina Grimm, Suling J. Lin, Jessica Wappler, Bertram Klinger, Nils Blüthgen, Ilona Du Bois, Bernd Schmeck, Hans Lehrach, Marjo de Graauw, Emanuel Gonçalvès, Julio Sáez-Rodríguez, Patrick Tan, Heike Grabsch, Alessandro Prigione, Stefan Kempa, Thorsten Cramer
Software Mentions: 8
Published: almost 11 years ago

10.1371/journal.pgen.1009094

Transposon mutagenesis identifies cooperating genetic drivers during keratinocyte transformation and cutaneous squamous cell carcinoma progression
Cited by: 2
Author(s): Aziz Aiderus, Justin Y. Newberg, Liliana Guzmán-Rojas, Ana M. Contreras-Sandoval, Amanda L. Meshey, Devin J. Jones, Felipe Amaya-Manzanares, Roberto Rangel, Jerrold M. Ward, Song Choon Lee, Kenneth Ban, Keith Rogers, Susan Rogers, Luxmanan Selvanesan, Leslie A. McNoe, Neal G. Copeland, Nancy A. Jenkins, Kenneth Y. Tsai, Michael A. Black, Karen Mann, Michael B. Mann
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.ppat.1006525

Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens
Cited by: 53
Author(s): Olaya Rendueles, Marc García-Garcerá, Bertrand Néron, Marie Touchon, Eduardo P. C. Rocha
Software Mentions: 8
Published: over 9 years ago

10.1186/s12889-018-5235-x

The fundamental association between mental health and life satisfaction: results from successive waves of a Canadian national survey
Cited by: 121
Author(s): Patrick Lombardo, Wayne Jones, Liangliang Wang, Xin Shen, Elliot M. Goldner
Software Mentions: 8
Published: over 8 years ago

10.1016/j.ekir.2021.04.002

Anti-PLA2R1 Antibodies as Prognostic Biomarker in Membranous Nephropathy
Cited by: 16
Author(s): Anne-Els van de Logt, Joana Justino, Coralien H. Vink, Jan van den Brand, Hanna Dębiec, Gérard Lambeau, Jack F.M. Wetzels
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pmed.1003413

Body mass index and risk of dying from a bloodstream infection: A Mendelian randomization study
Cited by: 14
Author(s): Tormod Rogne, Erik Solligård, Stephen Burgess, Ben Brumpton, Julie Paulsen, Hallie C. Prescott, Randi Marie Mohus, Lise Tuset Gustad, Arne Mehl, Bjørn Olav Åsvold, Andrew T. DeWan, Jan Kristian Damås
Software Mentions: 8
Published: almost 6 years ago

10.1093/jxb/eraa465

Targeted expression of the arsenate reductase HAC1 identifies cell type specificity of arsenic metabolism and transport in plant roots
Cited by: 9
Author(s): Sina Fischer, Eduardo Sánchez-Bermejo, Xuejie Xu, Paulina Flis, Priya Ramakrishna, Mary Lou Guerinot, Fang‐Jie Zhao, David E. Salt
Software Mentions: 8
Published: about 6 years ago

10.1007/s10278-017-0037-8

SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research
Cited by: 239
Author(s): Ziv Yaniv, Bradley Lowekamp, Hans J. Johnson, Richard Beare
Software Mentions: 8
Published: almost 9 years ago

10.3390/jcm9030711

Deregulation of the Purine Pathway in Pre-Transplant Liver Biopsies Is Associated with Graft Function and Survival after Transplantation
Cited by: 4
Author(s): Jin Xu, Mohammad Hassan-Ally, Ana María Casas-Ferreira, Tommi Suvitaival, Yun Ma, Hector Vilca‐Melendez, Mohamed Rela, Nigel Heaton, Wayel Jassem, Cristina Legido‐Quigley
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pntd.0007305

A community-based knowledge, attitude, and practice survey on rabies among cattle owners in selected areas of Bhutan
Cited by: 26
Author(s): Sangay Rinchen, Tenzin Tenzin, David C. Hall, Frank van der Meer, Basant Sharma, Kinzang Dukpa, Susan C. Cork
Software Mentions: 8
Published: over 7 years ago

10.1371/journal.pntd.0008623

Population genomic evidence that human and animal infections in Africa come from the same populations of Dracunculus medinensis
Cited by: 16
Author(s): Caroline Durrant, Elizabeth A. Thiele, Nancy Holroyd, Stephen R. Doyle, Guillaume Sallé, Alan S. Tracey, Geetha Sankaranarayanan, Magda E. Lotkowska, Hayley M. Bennett, Harrison Thomas, Zahra Abdellah, Ouakou Tchindebet, Mesfin Wossen, Makoy Samuel Yibi Logora, Cheick Oumar Coulibaly, Adam Weiss, Albrecht I. Schulte‐Hostedde, Jeremy M. Foster, Christopher A. Cleveland, Michael J. Yabsley, Ernesto Ruiz‐Tiben, Matthew Berriman, Mark L. Eberhard, James A. Cotton
Software Mentions: 8
Published: almost 6 years ago

10.1186/s12889-021-10979-3

Associations of meeting 24-h movement guidelines with stress and self-rated health among adults: is meeting more guidelines associated with greater benefits?
Cited by: 16
Author(s): Kaja Kastelic, Željko Pedišić, Dean Lipovac, Nika Kastelic, Sitong Chen, Nejc Šarabon
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0155237

Human Exposures to Bisphenol A, Bisphenol F and Chlorinated Bisphenol A Derivatives and Thyroid Function
Cited by: 66
Author(s): Xanthi Andrianou, Stephanie Gängler, Doina Piciu, Pantelis Charisiadis, Christina Zira, K. Aristidou, Doina Piciu, Russ Hauser, Konstantinos C. Makris
Software Mentions: 8
Published: almost 10 years ago

10.1186/s13059-021-02260-y

LINE retrotransposons characterize mammalian tissue-specific and evolutionarily dynamic regulatory regions
Cited by: 31
Author(s): Maša Roller, Ericca L. Stamper, Diego Villar, Osagie Izuogu, Fergal J. Martin, Aisling M. Redmond, Raghavendra Ramachanderan, Louise Harewood, Duncan T. Odom, Paul Flicek
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0229689

Population dynamics and biological feasibility of sustainable harvesting as a conservation strategy for tropical and temperate freshwater turtles
Cited by: 11
Author(s): Angga Rachmansah, D. Ryan Norris, James P. Gibbs
Software Mentions: 8
Published: over 6 years ago

10.1186/s13059-020-02195-w

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
Cited by: 107
Author(s): Alon Shaiber, Amy Willis, Tom O. Delmont, Simon Roux, Lin-Xing Chen, Abigail C. Schmid, Mahmoud Yousef, Andrea R. Watson, Karen Lolans, Özcan C. Esen, Sonny T. M. Lee, Nora Downey, Hilary G. Morrison, Floyd E. Dewhirst, Jessica L. Mark Welch, A. Murat Eren
Software Mentions: 8
Published: almost 6 years ago

10.18632/oncotarget.14443

Investigating the utility of human melanoma cell lines as tumour models
Cited by: 48
Author(s): Krista Vincent, Lynne-Marie Postovit
Software Mentions: 8
Published: almost 10 years ago

10.1186/s13059-020-01998-1

Wheat chromatin architecture is organized in genome territories and transcription factories
Cited by: 89
Author(s): Lorenzo Concia, Alaguraj Veluchamy, Juan S. Ramirez-Prado, Azahara Martin-Ramirez, Ying Huang, Magali Perez, Séverine Domenichini, Natalia Y. Rodriguez Granados, Soon-Kap Kim, Thomas Blein, Susan Duncan, Clement Pichot, Deborah Manza‐Mianza, Caroline Juéry, Etienne Paux, Graham Moore, Heribert Hirt, Catherine Bergounioux, Martín Crespi, Magdy M. Mahfouz, Abdelhafid Bendahmane, Chang Liu, Anthony Hall, Cécile Raynaud, David Latrasse, Moussa Benhamed
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0191752

Transfusion practice in anemic, non-bleeding patients: Cross-sectional survey of physicians working in general internal medicine teaching hospitals in Switzerland
Cited by: 4
Author(s): Michelle von Babo, Corinne Chmiel, Simon Andreas Müggler, Julia Rakusa, Caroline Schuppli, Philipp Meier, Manuel Fischler, Martin Urner
Software Mentions: 8
Published: over 8 years ago

10.1371/journal.pone.0241059

Health related quality of life and satisfaction with care of stroke patients in Budapest: A substudy of the EuroHOPE project
Cited by: 7
Author(s): Ildikó Szőcs, Balázs Dobi, Judit Lám, Károly Orbán-Kis, Unto Häkkinen, Éva Bíró, Dániel Bereczki, Ildikó Vastagh
Software Mentions: 8
Published: about 6 years ago

10.1186/s13059-019-1641-3

dStruct: identifying differentially reactive regions from RNA structurome profiling data
Cited by: 20
Author(s): Krishna Choudhary, Yi-Chun Lai, Elizabeth Tran, Sharon Aviran
Software Mentions: 8
Published: over 7 years ago

10.1186/s13059-018-1567-1

Expression quantitative trait loci in the developing human brain and their enrichment in neuropsychiatric disorders
Cited by: 119
Author(s): Heath O’Brien, Eilís Hannon, Matthew Hill, Carolina Toste, Matthew J. Robertson, Joanne Morgan, Gemma M. McLaughlin, Cathryn M. Lewis, Leonard C Schalkwyk, Lynsey S. Hall, Antonio F. Pardiñas, Michael John Owen, Michael O’Donovan, Jonathan Mill, Nicholas John Bray
Software Mentions: 8
Published: almost 8 years ago

10.1186/s13059-018-1435-z

RNA m6A methylation participates in regulation of postnatal development of the mouse cerebellum
Cited by: 152
Author(s): Chunhui Ma, Mengqi Chang, Hongyi Lv, Zhiwei Zhang, Weilong Zhang, Xue He, Gaolang Wu, Shuaiyang Zhao, Yao Zhang, Di Wang, Xufei Teng, Chunying Liu, Qing Li, Arne Klungland, Yamei Niu, Shuhui Song, Wei‐Min Tong
Software Mentions: 8
Published: over 8 years ago

10.1371/journal.pone.0239189

Mining GWAS and eQTL data for CF lung disease modifiers by gene expression imputation
Cited by: 8
Author(s): Hong Dang, Deepika Polineni, Rhonda G. Pace, Jaclyn R. Stonebraker, Harriet Corvol, Garry R. Cutting, Mitchell L. Drumm, Lisa J. Strug, Wanda K. O’Neal, Michael R. Knowles
Software Mentions: 8
Published: almost 6 years ago

10.7554/eLife.54818

A single-cell survey of Drosophila blood
Cited by: 109
Author(s): Sudhir Gopal Tattikota, Bumsik Cho, Yifang Liu, Yanhui Hu, Víctor Barrera, Michael J. Steinbaugh, Sangtae Yoon, Aram Comjean, Fangge Li, Franz Dervis, Ruei-Jiun Hung, Jin Wu Nam, Shannan Ho Sui, Jiwon Shim, Norbert Perrimon
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0109917

Adjacent Habitat Influence on Stink Bug (Hemiptera: Pentatomidae) Densities and the Associated Damage at Field Corn and Soybean Edges
Cited by: 67
Author(s): P. Dilip Venugopal, Peter L. Coffey, Galen P. Dively, William O. Lamp
Software Mentions: 8
Published: about 12 years ago

10.1371/journal.pone.0255708

Identification of key genes and immune infiltration modulated by CPAP in obstructive sleep apnea by integrated bioinformatics analysis
Cited by: 3
Author(s): Cheng Fan, Sisi Huang, Chunhua Xiang, Tianhui An, Yi Song
Software Mentions: 8
Published: about 5 years ago

10.3389/fvets.2020.00523

Mind the Queue: A Case Study in Visualizing Heterogeneous Behavioral Patterns in Livestock Sensor Data Using Unsupervised Machine Learning Techniques
Cited by: 11
Author(s): Catherine McVey, Fushing Hsieh, Diego Manríquez, Pablo Pinedo, Kristina Horback
Software Mentions: 8
Published: about 6 years ago

10.1371/journal.pone.0199841

Spatially explicit action research for coastal fisheries management
Cited by: 7
Author(s): Tara N. Lawrence, R. S. Bhalla
Software Mentions: 8
Published: over 8 years ago

10.3389/fpsyg.2021.601679

Computational Language Assessments of Harmony in Life — Not Satisfaction With Life or Rating Scales — Correlate With Cooperative Behaviors
Cited by: 7
Author(s): Oscar Kjell, Daiva Daukantaité, Sverker Sikström
Software Mentions: 8
Published: over 5 years ago

10.3389/fpsyg.2020.567484

Mental Health Through the COVID-19 Quarantine: A Growth Curve Analysis on Italian Young Adults
Cited by: 85
Author(s): Anna Parola, Alessandro Rossi, Francesca Tessitore, Gina Troisi, Stefania Mannarini
Software Mentions: 8
Published: about 6 years ago

10.1371/journal.pone.0143666

Pathogenesis of Primary Foot-and-Mouth Disease Virus Infection in the Nasopharynx of Vaccinated and Non-Vaccinated Cattle
Cited by: 44
Author(s): Carolina Stenfeldt, Michael Eschbaumer, Juan M. Pacheco, Steven I. Rekant, Luis L. Rodrı́guez, Jonathan Arzt
Software Mentions: 8
Published: almost 11 years ago

10.3389/fpls.2018.00387

Functional and Taxonomic Differentiation of Macrophyte Assemblages Across the Yangtze River Floodplain Under Human Impacts
Cited by: 22
Author(s): Min Zhang, Jorge García Molinos, Xiaolin Zhang, Jun Xu
Software Mentions: 8
Published: over 8 years ago

10.3389/fpls.2020.00820

Biological Nitrification Inhibition (BNI): Phenotyping of a Core Germplasm Collection of the Tropical Forage Grass Megathyrsus maximus Under Greenhouse Conditions
Cited by: 28
Author(s): Daniel Villegas, Ashly Arévalo, Jonathan Nùñez, Johanna Mazabel, G. V. Subbarao, Idupulapati M. Rao, Jose J De Vega, Jacobo Arango
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0239639

Monsters with a shortened vertebral column: A population phenomenon in radiating fish Labeobarbus (Cyprinidae)
Cited by: 9
Author(s): А. С. Голубцов, Nikolai B. Korostelev, Б. А. Левин
Software Mentions: 8
Published: almost 6 years ago

10.3390/cancers13184656

The Evolution and Prognostic Role of Tumour-Infiltrating Lymphocytes and Peripheral Blood-Based Biomarkers in Inflammatory Breast Cancer Patients Treated with Neoadjuvant Chemotherapy
Cited by: 7
Author(s): Christophe Van Berckelaer, Iris Vermeiren, Leonie Vercauteren, Charlotte Rypens, Gizem Öner, Xuan Bich Trinh, Wiebren A.A. Tjalma, Glenn Broeckx, Emmanuelle Charafe‐Jauffret, Steven Van Laere, François Bertucci, Cécile Colpaert, Peter van Dam
Software Mentions: 8
Published: about 5 years ago

10.3390/cancers13061212

Comparison of Structural and Short Variants Detected by Linked-Read and Whole-Exome Sequencing in Multiple Myeloma
Cited by: 3
Author(s): Ashwini Kumar, Sadiksha Adhikari, Matti Kankainen, Caroline A. Heckman
Software Mentions: 8
Published: over 5 years ago

10.3390/cancers12010045

N-Terminal Truncated Myb with New Transcriptional Activity Produced Through Use of an Alternative MYB Promoter in Salivary Gland Adenoid Cystic Carcinoma
Cited by: 11
Author(s): Candace A. Frerich, Hailey N. Sedam, Huining Kang, Yoshitsugu Mitani, Adel K. El‐Naggar, Scott A. Ness
Software Mentions: 8
Published: almost 7 years ago

10.3390/cancers12113089

CT-Based Radiomics Analysis to Predict Malignancy in Patients with Intraductal Papillary Mucinous Neoplasm (IPMN) of the Pancreas
Cited by: 28
Author(s): David Tobaly, João Santinha, Riccardo Sartoris, Marco Dioguardi Burgio, Celso Matos, Jérôme Cros, Anne Couvelard, Vinciane Rebours, Alain Sauvanet, Maxime Ronot, Nikolaos Papanikolaou, Valérie Vilgrain
Software Mentions: 8
Published: about 6 years ago

10.3389/fpls.2021.675760

Genotype-Specific Expression and NLR Repertoire Contribute to Phenotypic Resistance Diversity in Plantago lanceolata
Cited by: 4
Author(s): Pezhman Safdari, Layla Höckerstedt, Mikael Brosché, Jarkko Salojärvi, Anna‐Liisa Laine
Software Mentions: 8
Published: over 5 years ago

10.3389/fpls.2021.616975

Heterotic Patterns of Temperate and Tropical Maize by Ear Photometry
Cited by: 1
Author(s): Seth Tolley, Amritpal Singh, Mitchell R. Tuinstra
Software Mentions: 8
Published: over 5 years ago

10.3389/fmolb.2021.655126

Silencing of the TRIM58 Gene by Aberrant Promoter Methylation is Associated with a Poor Patient Outcome and Promotes Cell Proliferation and Migration in Clear Cell Renal Cell Carcinoma
Cited by: 6
Author(s): Ying Gan, Congcong Cao, Aolin Li, Haifeng Song, Guanyu Kuang, Binglei Ma, Quan Zhang, Qian Zhang
Software Mentions: 8
Published: over 5 years ago

10.1016/j.csbj.2021.05.024

Machine learning applied to serum and cerebrospinal fluid metabolomes revealed altered arginine metabolism in neonatal sepsis with meningoencephalitis
Cited by: 12
Author(s): Peng Zhang, Zhangxing Wang, Huixian Qiu, Wenhao Zhou, Mingbang Wang, Guoqiang Cheng
Software Mentions: 8
Published: almost 6 years ago

10.3389/fmolb.2019.00005

Alternative Splicing of MXD3 and Its Regulation of MXD3 Levels in Glioblastoma
Cited by: 10
Author(s): Tin Ngo, Abraham Corrales, Traci Bourne, Samir Elmojahid, Kit S. Lam, Elizabeth Díaz
Software Mentions: 8
Published: over 7 years ago

10.3389/fmolb.2021.657087

N6-Methyladenosine RNA Methylation Regulator-Related Alternative Splicing (AS) Gene Signature Predicts Non–Small Cell Lung Cancer Prognosis
Cited by: 16
Author(s): Zhenyu Zhao, Qidong Cai, Peng-Fei Zhang, Boxue He, Ping Xiong, Guangxu Tu, Weilin Peng, Li Wang, Fenglei Yu, Xiang Wang
Software Mentions: 8
Published: over 5 years ago

10.1093/conphys/coab047

An organizing feature of bumble bee life history: worker emergence promotes queen reproduction and survival in young nests
Cited by: 7
Author(s): Erica Sarro, Penglin Sun, Kerry E. Mauck, Damaris Rodriguez-Arellano, Naoaki Yamanaka, S. Hollis Woodard
Software Mentions: 8
Published: almost 6 years ago

10.3389/fmicb.2019.02492

Do Organic Substrates Drive Microbial Community Interactions in Arctic Snow?
Cited by: 17
Author(s): Benoît Bergk Pinto, Lorrie Maccario, Aurélien Dommergue, Timothy M. Vogel, Catherine Larose
Software Mentions: 8
Published: almost 7 years ago

10.3389/fmicb.2020.01780

Response of Soil Bacterial Community Diversity and Composition to Time, Fertilization, and Plant Species in a Sub-Boreal Climate
Cited by: 5
Author(s): Honghong Li, Petri Penttinen, Anu Mikkonen, Frederick L. Stoddard, Kristina Lindström
Software Mentions: 8
Published: about 6 years ago

10.1093/dnares/dsaa017

A specific combination of dual index adaptors decreases the sensitivity of amplicon sequencing with the Illumina platform
Cited by: 0
Author(s): Yuu Hirose, Takuhei Shiozaki, Itsuki Hamano, Shizue Yoshihara, Hayato Tokumoto, Toshihiko Eki, Naomi Harada
Software Mentions: 8
Published: about 6 years ago

10.18632/oncotarget.13467

Effects of Abies sibirica terpenes on cancer- and aging-associated pathways in human cells
Cited by: 9
Author(s): Anna V. Kudryavtseva, George S. Krasnov, Anastasiya V. Lipatova, B. Ya. Alekseev, Faniya Maganova, Mikhail Shaposhnikov, Maria S. Fedorova, Anastasiya V. Snezhkina, Alexey Moskalev
Software Mentions: 8
Published: almost 10 years ago

10.3389/fmicb.2018.00570

SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments
Cited by: 37
Author(s): Nicholas D. Youngblut, Samuel E. Barnett, Daniel H. Buckley
Software Mentions: 8
Published: over 8 years ago

10.3389/fmicb.2020.01045

Effects of Intra- and Interspecific Plant Density on Rhizosphere Bacterial Communities
Cited by: 23
Author(s): Andrea Cavalieri, Friedhelm Bak, Adriana M. García-Lemos, Jacob Weiner, Mette Haubjerg Nicolaisen, Ole Nybroe
Software Mentions: 8
Published: over 6 years ago

10.3389/fmicb.2020.00494

A Multi-Omics Analysis Suggests Links Between the Differentiated Surface Metabolome and Epiphytic Microbiota Along the Thallus of a Mediterranean Seaweed Holobiont
Cited by: 27
Author(s): Benoît Paix, Nathan Carriot, Raphaëlle Barry‐Martinet, Stéphane Greff, Benjamin Misson, Jean‐François Briand, Gérald Culioli
Software Mentions: 8
Published: over 6 years ago

10.1186/s41512-021-00103-9

The development and validation of prognostic models for overall survival in the presence of missing data in the training dataset: a strategy with a detailed example
Cited by: 1
Author(s): Kara-Louise Royle, David A. Cairns
Software Mentions: 8
Published: about 5 years ago

10.7717/peerj.11894

Identification of a circRNA-miRNA-mRNA regulatory network for exploring novel therapeutic options for glioma
Cited by: 4
Author(s): Yi He, Yihong Chen, Yuxin Tong, Wenyong Long, Qing Liu
Software Mentions: 7
Published: about 5 years ago

10.1186/s40793-019-0348-0

Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom
Cited by: 13
Author(s): Srijak Bhatnagar, Elise S. Cowley, Sebastian Kopf, Sherlynette Pérez Castro, Sean M. Kearney, Scott C. Dawson, Kurt Hanselmann, S. Emil Ruff
Software Mentions: 7
Published: almost 7 years ago

10.3389/fcell.2019.00283

A Combined Mass Spectrometry and Data Integration Approach to Predict the Mitochondrial Poly(A) RNA Interacting Proteome
Cited by: 2
Author(s): Selma L van Esveld, Şirin Cansız-Arda, Fenna Hensen, Robin van der Lee, Martijn Huynen, Johannes N. Spelbrink
Software Mentions: 7
Published: almost 7 years ago

10.1186/s12894-021-00795-7

Comprehensive analysis of tumour mutational burden and its clinical significance in prostate cancer
Cited by: 14
Author(s): Limin Wang, Shucheng Pan, Binbin Zhu, Zhenliang Yu, Wei Wang
Software Mentions: 7
Published: over 5 years ago

10.1186/s40793-020-00365-8

Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond
Cited by: 14
Author(s): Jessica Chopyk, Daniel J. Nasko, Sarah Allard, Anthony Bui, Mihai Pop, Emmanuel F. Mongodin, Amy R. Sapkota
Software Mentions: 7
Published: almost 6 years ago

10.3389/fimmu.2021.645320

Effects of Hypoxia in Intestinal Tumors on Immune Cell Behavior in the Tumor Microenvironment
Cited by: 14
Author(s): Luping Zhang, Shaokun Wang, Yachen Wang, Wenjie Zhao, Yingli Zhang, Nan Zhang, Hong Xu
Software Mentions: 7
Published: over 5 years ago

10.3389/fvets.2018.00269

The Use of Kernel Density Estimation With a Bio-Physical Model Provides a Method to Quantify Connectivity Among Salmon Farms: Spatial Planning and Management With Epidemiological Relevance
Cited by: 27
Author(s): Danielle L. Cantrell, Erin E. Rees, Raphaël Vanderstichel, Jon E. Grant, Ramón Filgueira, Crawford W. Revie
Software Mentions: 7
Published: almost 8 years ago

10.1038/s41598-021-95668-2

Short-term cell death in tissues of Pulsatilla vernalis seeds from natural and ex situ conserved populations
Cited by: 0
Author(s): Katarzyna M. Zielińska, Andrzej Kaźmierczak, Ewa Michalska
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pgen.1008375

DNA variants affecting the expression of numerous genes in trans have diverse mechanisms of action and evolutionary histories
Cited by: 29
Author(s): Sheila Lutz, Christian Brion, Margaret Kliebhan, Frank W. Albert
Software Mentions: 7
Published: almost 7 years ago

10.7717/peerj.7233

An artificial-vision- and statistical-learning-based method for studying the biodegradation of type I collagen scaffolds in bone regeneration systems
Cited by: 9
Author(s): Y. Robles-Bykbaev, Salvador Naya, Silvia Díaz‐Prado, D. Calle-Lopez, Vladimir Robles-Bykbaev, Luis Garzón, Clara Sanjurjo‐Rodríguez, Javier Tarrío-Saavedra
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-021-85855-6

Developing a non-destructive metabarcoding protocol for detection of pest insects in bulk trap catches
Cited by: 29
Author(s): Jana Batovska, Alexander M. Piper, Isabel Valenzuela, John Paul Cunningham, Mark J. Blacket
Software Mentions: 7
Published: over 5 years ago

10.3389/fmolb.2021.705008

CUX1 Facilitates the Development of Oncogenic Properties Via Activating Wnt/β-Catenin Signaling Pathway in Glioma
Cited by: 2
Author(s): Fang Fěng, Zongqing Zhao, Yunfei Zhou, Yalin Cheng, Xiujie Wu, Xueyuan Heng
Software Mentions: 7
Published: about 5 years ago

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