Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/srep35903

https://doi.org/10.1038/srep35903

Genome-wide methylation analysis identified sexually dimorphic methylated regions in hybrid tilapia

Cited by: 59
Author(s): Zi Yi Wan, Jun Xia, Grace Lin, Le Wang, Valerie Chun Ling Lin, Gen Hua Yue
Published: about 8 years ago

Software Mentions 8

bioconductor: BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs
Papers that mentioned: 47
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: methylKit
DNA methylation analysis from high-throughput bisulfite sequencing results
Papers that mentioned: 154
bioconductor: MethylSeekR
Segmentation of Bis-seq data
Papers that mentioned: 33
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: IMP
Interactive Model Performance Evaluation
Papers that mentioned: 172
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759