cran: ape | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-83355-1

Phylogenomics reveals viral sources, transmission, and potential superinfection in early-stage COVID-19 patients in Ontario, Canada
Cited by: 10
Author(s): Calvin Sjaarda, Nazneen Rustom, Gerald A. Evans, David Huang, Santiago Pérez-Patrigeón, Melissa Hudson, Henry Wong, Zhengxin Sun, T Hugh Guan, Muhammad Ayub, Cláudio N. Soares, Robert I. Colautti, Prameet M. Sheth
Software Mentions: 5
Published: almost 4 years ago

10.1007/s00442-019-04426-9

Low levels of intraspecific trait variation in a keystone invertebrate group
Cited by: 25
Author(s): Clara A. Gaudard, Mark P. Robertson, Tom R. Bishop
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-88964-4

A morphometric approach to track opium poppy domestication
Cited by: 18
Author(s): A.C. Assis Jesus, Vincent Bonhomme, Allowen Evin, Sarah Ivorra, Raül Soteras, Aurélie Salavert, Ferrán Antolín, Laurent Bouby
Software Mentions: 5
Published: over 3 years ago

10.1186/s12862-018-1297-8

Diversity of opisthokont septin proteins reveals structural constraints and conserved motifs
Cited by: 15
Author(s): Ben Auxier, Jaclyn Dee, Mary L. Berbee, Michelle Momany
Software Mentions: 5
Published: almost 6 years ago

10.3389/fmicb.2020.590944

Analyzing Ash Leaf-Colonizing Fungal Communities for Their Biological Control of Hymenoscyphus fraxineus
Cited by: 21
Author(s): Regina Becker, Kristina Ulrich, Undine Behrendt, Michael Kube, Andreas Ulrich
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0164532

The Evolutionary Basis of Naturally Diverse Rice Leaves Anatomy
Cited by: 23
Author(s): Jolly Chatterjee, Jacqueline Dionora, Abigail Elmido-Mabilangan, Samart Wanchana, Vivek Thakur, Anindya Bandyopadhyay, D. S. Brar, W. Paul Quick
Software Mentions: 5
Published: about 8 years ago

10.1186/1471-2105-12-104

PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Cited by: 50
Author(s): Botond Sipos, Tim Massingham, Gregory E. Jordan, Nick Goldman
Software Mentions: 5
Published: over 13 years ago

10.1093/gbe/evz246

Reprogramming of retrotransposon activity during speciation of the genus Citrus
Cited by: 2
Author(s): Carles Borredà, Estela Pérez-Román, Victoria Ibáñez, Javier Terol, Manuel Talón
Software Mentions: 5
Published: about 5 years ago

10.1093/molbev/msaa309

A New Catalog of Structural Variants in 1,301 A. thaliana Lines from Africa, Eurasia, and North America Reveals a Signature of Balancing Selection at Defense Response Genes
Cited by: 22
Author(s): Mehmet Göktay, Andrea Fulgione, Angela M. Hancock
Software Mentions: 5
Published: almost 4 years ago

10.3389/fnana.2016.00099

Big Cat Coalitions: A Comparative Analysis of Regional Brain Volumes in Felidae
Cited by: 19
Author(s): Sharleen T. Sakai, Bradley M. Arsznov, Ani E. Hristova, Elise Yoon, Barbara L. Lundrigan
Software Mentions: 5
Published: about 8 years ago

10.1093/molbev/msw285

Rapid expansion of immune-related gene families in the house fly, Musca domestica
Cited by: 23
Author(s): Timothy B. Sackton, Brian P. Lazzaro, Andrew G. Clark
Software Mentions: 5
Published: almost 8 years ago

10.1002/ece3.7555

Scaling the extinction vortex: Body size as a predictor of population dynamics close to extinction events
Cited by: 7
Author(s): Nathan F. Williams, Louise McRae, Robin Freeman, Pol Capdevila, Christopher F. Clements
Software Mentions: 5
Published: over 3 years ago

10.1186/s13100-019-0190-3

Stowaway miniature inverted repeat transposable elements are important agents driving recent genomic diversity in wild and cultivated carrot
Cited by: 6
Author(s): Alicja Macko-Podgórni, Katarzyna Stelmach, Kornelia Kwolek, Dariusz Grzebelus
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0088805

Molecular Phylogenetics and Temporal Diversification in the Genus Aeromonas Based on the Sequences of Five Housekeeping Genes
Cited by: 13
Author(s): J. Gaspar Lorén, Maribel Farfán, M. Carmen Fusté
Software Mentions: 5
Published: almost 11 years ago

10.3390/microorganisms8081152

Population Structure of Non-ST6 Listeria monocytogenes Isolated in the Red Meat and Poultry Value Chain in South Africa
Cited by: 11
Author(s): Itumeleng Matle, Thendo Mafuna, Evelyn Madoroba, Khanyisile R. Mbatha, Kudakwashe Magwedere, Rian Pierneef
Software Mentions: 5
Published: over 4 years ago

10.1128/mSphere.00738-20

Genomic Epidemiology and Evolution of Escherichia coli in Wild Animals in Mexico
Cited by: 14
Author(s): Robert S. Murphy, Martin Palm, Ville Mustonen, Jonas Warringer, Anne Farewell, Leopold Parts, Danesh Moradigaravand
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0154871

Fruiting Season Length Restricts Global Distribution of Female-Only Parental Care in Frugivorous Passerine Birds
Cited by: 8
Author(s): Sahas Barve, Frank A. La Sorte
Software Mentions: 5
Published: over 8 years ago

10.1186/s12862-016-0758-1

Molecular phylogeny and timing of diversification in Alpine Rhithrogena (Ephemeroptera: Heptageniidae)
Cited by: 15
Author(s): Laurent Vuataz, Sereina Rutschmann, Michael T. Monaghan, Michel Sartori
Software Mentions: 5
Published: about 8 years ago

10.3390/microorganisms8060905

First Detection of Paralytic Shellfish Toxins from Alexandrium pacificum above the Regulatory Limit in Blue Mussels (Mytilus galloprovincialis) in New South Wales, Australia
Cited by: 8
Author(s): Abanti Barua, Penelope Ajani, Rendy Ruvindy, H. Farrell, A. Zammit, Steve Brett, David R. Hill, Chowdhury Sarowar, Mona Hoppenrath, Shauna A. Murray
Software Mentions: 5
Published: over 4 years ago

10.3390/microorganisms9020229

Arbuscular Mycorrhizal Fungal Communities in the Soils of Desert Habitats
Cited by: 15
Author(s): Martti Vasar, John Davison, Siim‐Kaarel Sepp, Maarja Öpik, Mari Moora, Kadri Koorem, Yiming Meng, Jane Oja, Asem A. Akhmetzhanova, Saleh Al‐Quraishy, В. Г. Онипченко, Juan José Cantero, Sydney I. Glassman, Wael N. Hozzein, Martin Zobel
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0239541

Genetic structure of a germplasm for hybrid breeding in rye (Secale cereale L.)
Cited by: 14
Author(s): Nikolaj Vendelbo, Pernille Sarup, Jihad Orabi, Peter Skov Kristensen, A. Jahoor
Software Mentions: 5
Published: about 4 years ago

10.3390/ijms22115876

Oral Microbiome in Relation to Periodontitis Severity and Systemic Inflammation
Cited by: 31
Author(s): Adelina S. Plachokova, Sergio Andreu‐Sánchez, Marlies P. Noz, Jingyuan Fu, Niels P. Riksen
Software Mentions: 5
Published: over 3 years ago

10.1186/s40168-021-01119-5

Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage
Cited by: 16
Author(s): Dominique Le Bœuf, John M. Eppley, Daniel Mende, Rex R. Malmstrom, Tanja Woyke, Edward F. DeLong
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0182270

Differential regulation of germ line apoptosis and germ cell differentiation by CPEB family members in C. elegans
Cited by: 4
Author(s): Kapil Dev Singh, Xue Zheng, Stuart Milstein, Martin Keller, Bernd Roschitzki, Jonas Grossmann, Michael O. Hengartner
Software Mentions: 5
Published: over 7 years ago

10.1186/s13059-020-01971-y

High-resolution modeling of the selection on local mRNA folding strength in coding sequences across the tree of life
Cited by: 22
Author(s): Michael Peeri, Tamir Tuller
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0140761

Relation between Water Balance and Climatic Variables Associated with the Geographical Distribution of Anurans
Cited by: 25
Author(s): Braz Titon, Fernando Ribeiro Gomes
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pone.0244803

Trypanosoma (Herpetosoma) diversity in rodents and lagomorphs of New Mexico with a focus on epizootological aspects of infection in Southern Plains woodrats (Neotoma micropus)
Cited by: 0
Author(s): Irina Goodrich, Clifton McKee, Michael Kosoy
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0148459

Assessment of Overlap of Phylogenetic Transmission Clusters and Communities in Simple Sexual Contact Networks: Applications to HIV-1
Cited by: 28
Author(s): Luc Villandré, David A. Stephens, Aurélie Labbe, Huldrych F. Günthard, Roger D. Kouyos, Tanja Stadler
Software Mentions: 5
Published: almost 9 years ago

10.1186/s40168-020-00907-9

Impact of investigational microbiota therapeutic RBX2660 on the gut microbiome and resistome revealed by a placebo-controlled clinical trial
Cited by: 33
Author(s): Suryang Kwak, Joo-Hee Choi, Tiffany Hink, Kimberly A. Reske, Kenneth Blount, Courtney Jones, Margaret H. Bost, Xiaoqing Sun, Carey-Ann D. Burnham, Erik R. Dubberke, Gautam Dantas
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0127692

Revealing Beta-Diversity Patterns of Breeding Bird and Lizard Communities on Inundated Land-Bridge Islands by Separating the Turnover and Nestedness Components
Cited by: 71
Author(s): Xingfeng Si, Andrés Baselga, Ping Ding
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0188430

Diversification rates, host plant shifts and an updated molecular phylogeny of Andean Eois moths (Lepidoptera: Geometridae)
Cited by: 14
Author(s): Patrick Strutzenberger, Gunnar Brehm, Brigitte Gottsberger, Florian Bodner, Carlo L. Seifert, Konrad Fiedler
Software Mentions: 5
Published: almost 7 years ago

10.3389/fonc.2020.00117

From the Clinic to the Bench and Back Again in One Dog Year: How a Cross-Species Pipeline to Identify New Treatments for Sarcoma Illuminates the Path Forward in Precision Medicine
Cited by: 17
Author(s): Satish Rao, Jason A. Somarelli, Erdem Altunel, Laura E. Selmic, Mark Byrum, Maya U. Sheth, Serene Cheng, Kathryn E. Ware, So Young Kim, Joseph A. Prinz, Nicolas Devos, David L. Corcoran, Arthur Moseley, Erik J. Soderblom, Shiaowen David Hsu, William C. Eward
Software Mentions: 5
Published: almost 5 years ago

10.3389/fphys.2020.00706

Integrating Mortality Risk and the Adaptiveness of Hibernation
Cited by: 10
Author(s): Théo Constant, Sylvain Giroud, Vincent A. Viblanc, Mathilde L. Tissier, Patrick Bergeron, F. Stephen Dobson, Caroline Habold
Software Mentions: 5
Published: over 4 years ago

10.1128/mSphere.00104-18

The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis
Cited by: 95
Author(s): Stephen Wandro, Stephanie Osborne, Claudia Enriquez, Christine Bixby, Antonio Arrieta, Katrine Whiteson
Software Mentions: 5
Published: over 6 years ago

10.1002/ece3.7793

Common Buzzards wintering strategies as an effect of weather conditions and geographic barriers
Cited by: 1
Author(s): Emanuel Ștefan Baltag, István Kovács, Lucian Sfîcă
Software Mentions: 5
Published: over 3 years ago

10.3390/ani9100733

Virulence Genes, Shiga Toxin Subtypes, Serogroups, and Clonal Relationship of Shiga Toxin-Producing Escherichia Coli Strains Isolated from Livestock and Companion Animals
Cited by: 15
Author(s): Nicolás Galarce, Beatriz Escobar, Francisco Javier Sierro Sánchez, Esteban Paredes-Osses, Raúl Alegría-Morán, César Borie
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0113429

Body Size, Extinction Risk and Knowledge Bias in New World Snakes
Cited by: 14
Author(s): Bruno Vilela, Fabricio Villalobos, Miguel Á. Rodrı́guez, Levi Carina Terribile
Software Mentions: 5
Published: about 10 years ago

10.1186/s12864-019-6114-2

Genus level analysis of PKS-NRPS and NRPS-PKS hybrids reveals their origin in Aspergilli
Cited by: 14
Author(s): Sebastian Theobald, Tammi Camilla Vesth, Mikael Rørdam Andersen
Software Mentions: 5
Published: about 5 years ago

10.1128/mSphere.01070-20

Monitoring COVID-19 Transmission Risks by Quantitative Real-Time PCR Tracing of Droplets in Hospital and Living Environments
Cited by: 20
Author(s): Andrea Piana, Maria Eugenia Colucci, Federica Valeriani, Adriano Marcolongo, Giovanni Sotgiu, Cesira Pasquarella, Lory Marika Margarucci, Andrea Petrucca, Gianluca Gianfranceschi, Sergio Babudieri, Pietro Vitali, Giuseppe D’Ermo, Assunta Bizzarro, Flavio De Maio, Matteo Vitali, Antonio Azara, Ferdinando Romano, Maurizio Simmaco, Vincenzo Romano Spica
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-97556-1

De novo transcriptome assembly, polymorphic SSR markers development and population genetics analyses for southern corn rust (Puccinia polysora)
Cited by: 3
Author(s): Qiuyu Sun, Jie Liu, Keyu Zhang, Chong Huang, Leifu Li, Jiayu Dong, Yong Luo, Zhanhong Ma
Software Mentions: 5
Published: about 3 years ago

10.1038/s41598-021-97519-6

Landscape genetics and the genetic legacy of Upper Paleolithic and Mesolithic hunter-gatherers in the modern Caucasus
Cited by: 1
Author(s): Alexander Gavashelishvili, Alexey Yanchukov, David Tarkhnishvili, Marine Murtskhvaladze, Irakli Akhvlediani, Ceren Kazancı
Software Mentions: 5
Published: about 3 years ago

10.1242/bio.014902

Feliform carnivores have a distinguished constitutive innate immune response
Cited by: 23
Author(s): Sonja K. Heinrich, Bettina Wachter, Ortwin Aschenborn, Susanne Thalwitzer, Jörg Melzheimer, Heribert Hofer, Gábor Á. Czirják
Software Mentions: 5
Published: over 8 years ago

10.3389/fpls.2019.01434

Mapping and Dynamics of Regulatory DNA in Maturing Arabidopsis thaliana Siliques
Cited by: 12
Author(s): Alessandra M. Sullivan, Andrej A Arsovski, Agnieszka Thompson, Richard Sandstrom, Robert E. Thurman, Shane Neph, Audra Johnson, Shawn Sullivan, Peter J. Sabo, Fidencio Neri, Molly Weaver, Morgan Diegel, Jennifer L. Nemhauser, J Stamatoyannopoulos, Kerry L Bubb, Christine Queitsch
Software Mentions: 5
Published: about 5 years ago

10.1128/mSphere.00071-20

Different Types of Atrial Fibrillation Share Patterns of Gut Microbiota Dysbiosis
Cited by: 36
Author(s): Kun Zuo, Xiandong Yin, Kuibao Li, Jing Zhang, Pan Wang, Jie Jiao, Zheng Liu, Xiaoqing Liu, Jiapeng Liu, Jing Li, Xinchun Yang
Software Mentions: 5
Published: over 4 years ago

10.1186/s12898-019-0220-5

Ecological and life history traits are associated with Ross River virus infection among sylvatic mammals in Australia
Cited by: 11
Author(s): Michael Walsh
Software Mentions: 5
Published: almost 6 years ago

10.3389/fpls.2020.00022

Plastome Evolution and Phylogeny of Orchidaceae, With 24 New Sequences
Cited by: 50
Author(s): Sang Hyun Kim, Sangjin Jo, Se Hwan Cheon, Min Jung Joo, Ja Ram Hong, Myounghai Kwak, Ki Joong Kim
Software Mentions: 5
Published: over 4 years ago

10.1186/s12898-018-0171-2

Do avian blood parasites influence hypoxia physiology in a high elevation environment?
Cited by: 20
Author(s): Farah Ishtiaq, Sahas Barve
Software Mentions: 5
Published: over 6 years ago

10.3389/fpls.2020.01140

Development of a Novel Phenotypic Roadmap to Improve Blueberry Quality and Storability
Cited by: 10
Author(s): Brian Farneti, F. Emanuelli, Iuliia Khomenko, M. Ajelli, Franco Biasioli, L. Giongo
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.46883

Proteome-wide signatures of function in highly diverged intrinsically disordered regions
Cited by: 115
Author(s): Taraneh Zarin, Bob Strome, Alex N Nguyen Ba, Simon Alberti, Julie D. Forman‐Kay, Alan M. Moses
Software Mentions: 5
Published: over 5 years ago

10.1186/s12866-020-01884-7

Diversity and distribution of marine heterotrophic bacteria from a large culture collection
Cited by: 24
Author(s): Isabel Sanz-Sáez, Guillem Salazar, Pablo Sánchez, Elena Lara, Marta Royo-Llonch, Elisabet L. Sà, Teresa Lucena, María J. Pujalte, Dolors Vaqué, Carlos M. Duarte, Josep M. Gasol, Carlos Pedrós‐Alió, Olga Sánchez, Silvia G. Acinas
Software Mentions: 5
Published: over 4 years ago

10.1186/s12866-021-02195-1

Characteristics and variation of fecal bacterial communities and functions in isolated systolic and diastolic hypertensive patients
Cited by: 8
Author(s): Pan Wang, Ying Dong, Kun Zuo, Chide Han, Jie Jiao, Xinchun Yang, Jing Li
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0222527

Bacterial diversity in Icelandic cold spring sources and in relation to the groundwater amphipod Crangonyx islandicus
Cited by: 7
Author(s): Ragnhildur Guðmundsdóttir, Agnes-Katharina Kreiling, Bjarni K. Kristjánsson, V. Marteinsson, Snæbjörn Pálsson
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0078392

Scale Effects between Body Size and Limb Design in Quadrupedal Mammals
Cited by: 55
Author(s): Brandon M. Kilbourne, Louwrens C. Hoffman
Software Mentions: 5
Published: about 11 years ago

10.1073/pnas.2008281117

A SARS-CoV-2 vaccine candidate would likely match all currently circulating variants
Cited by: 192
Author(s): Bethany L. Dearlove, Éric Lewitus, Hongjun Bai, Yifan Li, Daniel B. Reeves, Michael Joyce, Paul T. Scott, Mihret F. Amare, Sandhya Vasan, Nelson L. Michael, Kayvon Modjarrad, Morgane Rolland
Software Mentions: 5
Published: about 4 years ago

10.1098/rsos.190939

Implications of kappa-casein evolutionary diversity for the self-assembly and aggregation of casein micelles
Cited by: 8
Author(s): Jean Manguy, Denis C. Shields
Software Mentions: 5
Published: about 5 years ago

10.1098/rsos.181423

Geographical, temporal and individual factors influencing foraging behaviour and consistency in Australasian gannets
Cited by: 4
Author(s): Marlenne A. Rodríguez‐Malagón, Elodie C. M. Camprasse, Lauren P. Angel, John P. Y. Arnould
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0217839

The allometry of proboscis length in Melittidae (Hymenoptera: Apoidae) and an estimate of their foraging distance using museum collections
Cited by: 5
Author(s): Annalie Melin, Harald W. Krenn, Raurie C.K. Bowie, Colin M. Beale, John C. Manning, Jonathan F. Colville
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.6126

Evolution of altitudinal migration in passerines is linked to diet
Cited by: 13
Author(s): Claudie Pageau, Mariana M. Vale, Márcio Argollo de Menezes, Luciana Barçante, Mateen Shaikh, Maria Alice S. Alves, Matthew W. Reudink
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0171870

Phylogenetic patterns and the adaptive evolution of osmoregulation in fiddler crabs (Brachyura, Uca)
Cited by: 25
Author(s): Samuel Coelho Faria, Diogo B. Provete, Carl L. Thurman, John Campbell McNamara
Software Mentions: 5
Published: almost 8 years ago

10.1128/mSystems.00195-17

Developing a Bacteroides System for Function-Based Screening of DNA from the Human Gut Microbiome
Cited by: 8
Author(s): Kathy N. Lam, Eric C. Martens, Trevor C. Charles
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0010429

Novel Weapons Testing: Are Invasive Plants More Chemically Defended than Native Plants?
Cited by: 60
Author(s): Eric M. Lind, John D. Parker
Software Mentions: 5
Published: over 14 years ago

10.1371/journal.pone.0134817

Male Homosexual Preference: Where, When, Why?
Cited by: 9
Author(s): Julien Barthes, Pierre‐André Crochet, M. Raymond
Software Mentions: 5
Published: over 9 years ago

10.1038/sdata.2014.15

Tree of Sex: A database of sexual systems
Cited by: 199
Author(s): Tia‐Lynn Ashman, Doris Bachtrog, Heath Blackmon, Emma E. Goldberg, Matthew W. Hahn, Mark Kirkpatrick, Jun Kitano, Judith E. Mank, Itay Mayrose, Ray Ming, Sarah P. Otto, Catherine L. Peichel, Matthew W. Pennell, Nicolas Perrin, Laura Ross, Nicole Valenzuela, Jana C. Vamosi
Software Mentions: 5
Published: over 10 years ago

10.1002/ece3.4006

Low acclimation capacity of narrow‐ranging thermal specialists exposes susceptibility to global climate change
Cited by: 40
Author(s): Tricia M. Markle, Kenneth H. Kozak
Software Mentions: 5
Published: over 6 years ago

10.1186/s12862-019-1545-6

Leaps and bounds: geographical and ecological distance constrained the colonisation of the Afrotemperate by Erica
Cited by: 9
Author(s): Michael D. Pirie, Martha Kandziora, Nicolai M. Nürk, Nicholas C Le Maitre, A. Mugrabi de Kuppler, Berit Gehrke, E. G. H. Oliver, Dirk U. Bellstedt
Software Mentions: 5
Published: almost 5 years ago

10.1098/rspb.2018.2387

The achaete–scute complex contains a single gene that controls bristle development in the semi-aquatic bugs
Cited by: 13
Author(s): Cédric Finet, Amélie Decaras, David Armisén, Abderrahman Khila
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pntd.0003284

Improvements on Restricted Insecticide Application Protocol for Control of Human and Animal African Trypanosomiasis in Eastern Uganda
Cited by: 30
Author(s): Dennis Muhanguzi, Kim Picozzi, Jan Hatendorf, Michael Thrusfield, Susan C. Welburn, John David Kabasa, Charles Waiswa
Software Mentions: 5
Published: about 10 years ago

10.1038/sdata.2019.7

The effect of 16S rRNA region choice on bacterial community metabarcoding results
Cited by: 222
Author(s): Yu. S. Bukin, Yuri P. Galachyants, И. В. Морозов, S. V. Bukin, А. S. Zakharenko, Т. I. Zemskaya
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0144147

The Independent Evolution Method Is Not a Viable Phylogenetic Comparative Method
Cited by: 3
Author(s): Rodger W. Griffin, Gabriel Yapuncich
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pone.0198367

Comprehensive evolutionary analysis of the Anthroherpon radiation (Coleoptera, Leiodidae, Leptodirini)
Cited by: 10
Author(s): Iva Njunjić, A. Perrard, Kasper P. Hendriks, Menno Schilthuizen, Michel Perreau, Vincent Merckx, Michel Baylac, Louis Deharveng
Software Mentions: 5
Published: over 6 years ago

10.1098/rspb.2016.1587

Evolutionary heritage influences Amazon tree ecology
Cited by: 44
Author(s): Fernanda Coelho de Souza, Kyle G. Dexter, Oliver L. Phillips, Roel Brienen, Jérôme Chave, David Galbraith, Gabriela Lopez‐Gonzalez, Abel Monteagudo Mendoza, R. Toby Pennington, Lourens Poorter, Miguel Alexiades, Esteban Álvarez-Dávila, Ana Andrade, L. E. O. C. Aragão, Alejandro Araujo‐Murakami, E.J.M.M. Arets, Gerardo A. Aymard C, Christopher Baraloto, Jorcely Barroso, Damien Bonal, René Boot, José L. Camargo, J. A. Comiskey, Fernando Cornejo Valverde, Plínio Barbosa de Camargo, Anthony Di Fiore, Fernando Elias, Terry L. Erwin, Ted R. Feldpausch, Leandro Valle Ferreira, Nikolaos M. Fyllas, Emanuel Gloor, Bruno Hérault, R. Herrera, Níro Higuchi, Eurídice N. Honorio Coronado, Timothy J. Killeen, William F. Laurance, Susan G. Laurance, J. Lloyd, Thomas Ε. Lovejoy, Yadvinder Malhi, Leandro Maracahipes, Beatriz Schwantes Marimon, Casimiro Mendoza, Paulo S. Morandi, David Neill, Percy Núñez Vargas, Edmar Almeida de Oliveira, Eddie Lenza, Walter A. Palacios, M. C. Peñuela, John J. Pipoly, Nigel C. A. Pitman, Adriana Prieto, Carlos Alberto Quesada, Hirma Ramírez‐Angulo, Agustín Rudas, Kalle Ruokolainen, Rafael de Paiva Salomão, Marcos Silveira, Juliana Stropp, Hans ter Steege, Raquel Thomas-Caesar, P. van der Hout, Geertje M. F. van der Heijden, P.J. van der Meer, Rodolfo Vásquez, Simone A. Vieira, Emilio Vilanova Torre, Vincent Vos, Ophelia Wang, Kenneth R. Young, Roderick Zagt, Timothy R. Baker
Software Mentions: 5
Published: almost 8 years ago

10.1098/rspb.2015.2840

Environmental drivers of crocodyliform extinction across the Jurassic/Cretaceous transition
Cited by: 40
Author(s): Jonathan Tennant, Philip D. Mannion, Paul Upchurch
Software Mentions: 5
Published: over 8 years ago

10.1038/srep41393

Tree cover in Central Africa: determinants and sensitivity under contrasted scenarios of global change
Cited by: 11
Author(s): Julie C. Aleman, Olivier Blarquez, Sylvie Gourlet‐Fleury, Laurent Brémond, Charly Favier
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0168441

Landscape Use and Co-Occurrence Patterns of Neotropical Spotted Cats
Cited by: 52
Author(s): Mariana B. Nagy‐Reis, James D. Nichols, Adriano Garcia Chiarello, Milton Cézar Ribeiro, Eleonore Zulnara Freire Setz
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pcbi.1009256

Computational identification and experimental characterization of preferred downstream positions in human core promoters
Cited by: 2
Author(s): René Dreos, Anna Sloutskin, Nati Malachi, Diana Ideses, Philipp Bücher, Tamar Juven‐Gershon
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0094162

Geographic Variation of Melanisation Patterns in a Hornet Species: Genetic Differences, Climatic Pressures or Aposematic Constraints?
Cited by: 39
Author(s): A. Perrard, Marcella Arca, Quentin Rome, Franck Müller, Jiang-Li Tan, Sanjaya Bista, Hari Nugroho, Raymond Baudoin, Michel Baylac, Jean François Silvain, James M. Carpenter, Claire Villemant
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.ppat.1009313

Diverging patterns of introgression from Schistosoma bovis across S. haematobium African lineages
Cited by: 24
Author(s): Olivier Rey, Ève Toulza, Cristian Chaparro, Jean‐François Allienne, Julien Kincaid-Smith, Eglantine Mathieu‐Bégné, Fiona Allan, David Rollinson, Bonnie L. Webster, Jérôme Boissier
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pcbi.1008640

Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa
Cited by: 7
Author(s): Verena Ras, Gerrit Botha, Shaun Aron, Katie Lennard, Imane Allali, Shantelle Claassen-Weitz, Kilaza Samson Mwaikono, Dane Kennedy, Jessica R. Holmes, Gloria Rendon, Sumir Panji, Christopher J. Fields, Nicola Mulder
Software Mentions: 5
Published: over 3 years ago

10.1186/s12862-019-1479-z

Identification and assessment of variable single-copy orthologous (SCO) nuclear loci for low-level phylogenomics: a case study in the genus Rosa (Rosaceae)
Cited by: 16
Author(s): Kévin Debray, Jordan Marie‐Magdelaine, Tom Ruttink, Jérémy Clotault, Fabrice Foucher, Valéry Malécot
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1003457

Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
Cited by: 207
Author(s): Thibaut Jombart, Anne Cori, Xavier Didelot, Simon Cauchemez, Christophe Fraser, Neil M. Ferguson
Software Mentions: 5
Published: almost 11 years ago

10.3389/fmicb.2019.02902

Exploring Soil Factors Determining Composition and Structure of the Bacterial Communities in Saline-Alkali Soils of Songnen Plain
Cited by: 42
Author(s): Shuang Wang, Lei Sun, Ning Ling, Chen Zhu, Fengqin Chi, Weiqun Li, Xiaoyu Hao, Wu Zhang, Jingyang Bian, Lei Chen, Dan Wei
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-018-23292-8

Fungal spore diversity reflects substrate-specific deposition challenges
Cited by: 45
Author(s): Sara Calhim, Panu Halme, Jens H. Petersen, Thomas Læssøe, Claus Bässler, Jacob Heilmann‐Clausen
Software Mentions: 5
Published: over 6 years ago

10.1002/ece3.2527

Experimentally comparing the attractiveness of domestic lights to insects: Do LEDs attract fewer insects than conventional light types?
Cited by: 44
Author(s): Andrew Wakefield, Moth Broyles, Emma L. Stone, Gareth Jones, Stephen Harris
Software Mentions: 5
Published: about 8 years ago

10.7717/peerj-cs.243

HACSim: an R package to estimate intraspecific sample sizes for genetic diversity assessment using haplotype accumulation curves
Cited by: 15
Author(s): Jarrett D. Phillips, Steven H. French, Robert Hanner, Daniel Gillis
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-018-26181-2

Paddy-upland rotation for sustainable agriculture with regards to diverse soil microbial community
Cited by: 31
Author(s): Ping Hou, Chia Hung Chien, Yi Fan Chiang-Hsieh, Kuan Chieh Tseng, Chi Nga Chow, Hao Huang, Wen Chi Chang
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2021.738129

Taxonomic Compositions and Co-occurrence Relationships of Protists in Bulk Soil and Rhizosphere of Soybean Fields in Different Regions of China
Cited by: 3
Author(s): Jun Zhang, Pengcheng Xing, Mengyu Niu, Gehong Wei, Peng Shi
Software Mentions: 5
Published: about 3 years ago

10.3934/microbiol.2019.1.62

Stability of temperate coral Astrangia poculata microbiome is reflected across different sequencing methodologies
Cited by: 5
Author(s): Dawn B. Goldsmith, Zoe A. Pratte, Christina A. Kellogg, Sara E. Snader, Koty Sharp
Software Mentions: 4
Published: almost 6 years ago

10.1002/aps3.11442

Relative performance of customized and universal probe sets in target enrichment: A case study in subtribe Malinae
Cited by: 13
Author(s): Roman Ufimov, Vojtěch Zeisek, Soňa Píšová, William J. Baker, Tomáš Fér, Marcela van Loo, Christoph Dobeš, Roswitha Schmickl
Software Mentions: 4
Published: over 3 years ago

10.31557/APJCP.2021.22.1.105

Spatial Association between Gastric Cancer Mortality and Goiter in Sardinia
Cited by: 5
Author(s): Giovanni Mario Pes, Giuseppe Fanciulli, Alessandro Delitala, Andrea Piana, Maria Pina Dore
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12859-019-3020-1

LSX: automated reduction of gene-specific lineage evolutionary rate heterogeneity for multi-gene phylogeny inference
Cited by: 3
Author(s): Carlos Rivera-Rivera, Juan I. Montoya‐Burgos
Software Mentions: 4
Published: over 5 years ago

10.1186/s12898-017-0116-1

Wild pollinators enhance oilseed rape yield in small-holder farming systems in China
Cited by: 35
Author(s): Yi Zou, Hai Xiao, Felix J.J.A. Bianchi, Frank Jauker, Shudong Luo, Wopke Van der Werf
Software Mentions: 4
Published: over 7 years ago

10.1186/1472-6785-14-22

Causes and consequences of fine-scale population structure in a critically endangered freshwater seal
Cited by: 28
Author(s): Mia Valtonen, Jukka U. Palo, Jouni Aspi, Minna Ruokonen, Mervi Kunnasranta, Tommi Nyman
Software Mentions: 4
Published: almost 11 years ago

10.1186/s12898-020-00298-3

The trinity of ecological contrasts: a case study on rich insect assemblages by means of species, functional and phylogenetic diversity measures
Cited by: 6
Author(s): Elia Guariento, Patrick Strutzenberger, Christine Truxa, Konrad Fiedler
Software Mentions: 4
Published: over 4 years ago

10.1186/s12862-018-1299-6

Macroevolution of sexual size dimorphism and reproduction-related phenotypic traits in lizards of the Chaco Domain
Cited by: 12
Author(s): Guadalupe López Juri, Margarita Chiaraviglio, Gabriela Cardozo
Software Mentions: 4
Published: almost 6 years ago

10.1186/1471-2148-12-102

Bayesian models for comparative analysis integrating phylogenetic uncertainty
Cited by: 85
Author(s): Pierre de Villemereuil, Jessie A. Wells, R. E. Edwards, Simon P. Blomberg
Software Mentions: 4
Published: over 12 years ago

10.1186/1471-2148-13-272

Explosive diversification following a benthic to pelagic shift in freshwater fishes
Cited by: 31
Author(s): Phillip R. Hollingsworth, Andrew M. Simons, James A. Fordyce, C. Darrin Hulsey
Software Mentions: 4
Published: almost 11 years ago

10.1186/1471-2148-12-182

Can phylogeny predict chemical diversity and potential medicinal activity of plants? A case study of amaryllidaceae
Cited by: 101
Author(s): Nina Rønsted, Matthew R. E. Symonds, Trine Birkholm, Søren Brøgger Christensen, Alan W. Meerow, Marianne Molander, Per Mølgaard, Gitte Petersen, Nina Rasmussen, J. Van Staden, G.I. Stafford, Anna K. Jäger
Software Mentions: 4
Published: almost 13 years ago

10.1186/s12862-014-0194-z

Basal metabolic rate and maternal energetic investment durations in mammals
Cited by: 9
Author(s): Gabrielle Jackson, Arne Ø. Mooers, Evgenia Dubman, Jenna Hutchen, Mark Collard
Software Mentions: 4
Published: about 10 years ago

10.1186/1471-2148-11-371

Driving south: a multi-gene phylogeny of the brown algal family Fucaceae reveals relationships and recent drivers of a marine radiation
Cited by: 51
Author(s): Fernando Cánovas, Catarina Mota, Ester A. Serrão, Gareth A. Pearson
Software Mentions: 4
Published: almost 14 years ago

10.1186/s12862-017-1071-3

A reconstruction of sexual modes throughout animal evolution
Cited by: 20
Author(s): Daniel A. Sasson, Joseph F. Ryan
Software Mentions: 4
Published: almost 7 years ago

Projects: cran: ape

Papers Mentioning ape 918