Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fpls.2019.01434

https://doi.org/10.3389/fpls.2019.01434

Mapping and Dynamics of Regulatory DNA in Maturing Arabidopsis thaliana Siliques

Cited by: 12
Author(s): Alessandra M. Sullivan, Andrej A Arsovski, Agnieszka Thompson, Richard Sandstrom, Robert E. Thurman, Shane Neph, Audra Johnson, Shawn Sullivan, Peter J. Sabo, Fidencio Neri, Molly Weaver, Morgan Diegel, Jennifer L. Nemhauser, J Stamatoyannopoulos, Kerry L Bubb, Christine Queitsch
Published: about 5 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989