cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3390/microorganisms8030405

Agroforestry Management Systems Drive the Composition, Diversity, and Function of Fungal and Bacterial Endophyte Communities in Theobroma Cacao Leaves
Cited by: 19
Author(s): Franziska Wemheuer, Dirk Hölscher, Bernd Wemheuer, Rolf Daniel, Stefan Vidal, Hervé Bertin Bisseleua Daghela
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2021.617949

Compositional Data Analysis of Periodontal Disease Microbial Communities
Cited by: 9
Author(s): Laura Sisk-Hackworth, Adrian Ortiz-Velez, Micheal Reed, Scott T. Kelley
Software Mentions: 6
Published: over 5 years ago

10.1186/s40168-021-01053-6

Towards enhancing coral heat tolerance: a “microbiome transplantation” treatment using inoculations of homogenized coral tissues
Cited by: 60
Author(s): Talisa Doering, Marlene Wall, Lalita Putchim, Tipwimon Rattanawongwan, Roman Schroeder, Ute Hentschel, Anna Krystyna Roik
Software Mentions: 6
Published: over 5 years ago

10.1038/s42003-019-0610-4

Above-below surface interactions mediate effects of seagrass disturbance on meiobenthic diversity, nematode and polychaete trophic structure
Cited by: 4
Author(s): Francisco J. A. Nascimento, Martin Dahl, Diana Deyanova, Liberatus D. Lyimo, Holly M. Bik, Taruna Schuelke, Tiago José Pereira, Mats Björk, Simon Creer, Martin Gullström
Software Mentions: 6
Published: almost 7 years ago

10.1038/s42003-018-0119-2

Biodiversity estimates and ecological interpretations of meiofaunal communities are biased by the taxonomic approach
Cited by: 26
Author(s): Francesca Leasi, Joseph L. Sevigny, Eric M. Laflamme, Tom Artois, Marco Curini‐Galletti, Alberto de Jesús Navarrete, Maikon Di Domênico, Freya Goetz, Jeffrey A. Hall, Rick Hochberg, Katharina M. Jörger, Ulf Jondelius, Mary Antonio Donatello Todaro, Herman H. Wirshing, Jon L. Norenburg, W. Kelley Thomas
Software Mentions: 6
Published: about 8 years ago

10.3389/fmicb.2018.01202

Relationships Between Gastrointestinal Parasite Infections and the Fecal Microbiome in Free-Ranging Western Lowland Gorillas
Cited by: 15
Author(s): Klára Vlčková, Barbora Pafčo, Klára J. Petrželková, David Modrý, Angelique Todd, Carl J. Yeoman, Manolito Torralba, Brenda A. Wilson, Rebecca M. Stumpf, Bryan A. White, Karen E. Nelson, Steven R. Leigh, Andrés Gómez
Software Mentions: 6
Published: about 8 years ago

10.3389/fmicb.2019.01637

Characterization of Distinct CyanoHABs-Related Modules in Microbial Recurrent Association Network
Cited by: 30
Author(s): Seong-Jun Chun, Yingshun Cui, Chang‐Soo Lee, A Ra Cho, Kiwoon Baek, Jae‐Suk Choi, So-Ra Ko, Hyung-Gwan Lee, Seungwoo Hwang, Hee‐Mock Oh, Chi‐Yong Ahn
Software Mentions: 6
Published: about 7 years ago

10.3389/fmicb.2018.02920

Symbiosis Specificity of the Preceding Host Plant Can Dominate but Not Obliterate the Association Between Wheat and Its Arbuscular Mycorrhizal Fungal Partners
Cited by: 23
Author(s): Catarina Campos, Mário de Carvalho, Clarisse Brı́gido, M. J. Goss, Tânia Nobre
Software Mentions: 6
Published: over 7 years ago

10.7717/peerj.5467

Unveiling community patterns and trophic niches of tropical and temperate ants using an integrative framework of field data, stable isotopes and fatty acids
Cited by: 17
Author(s): Félix Baumgarten Rosumek, Nico Blüthgen, Adrian Brückner, Florian Menzel, Gerhard Gebauer, Michael Heethoff
Software Mentions: 6
Published: almost 8 years ago

10.1186/s40168-020-00854-5

Alterations of gut microbiome accelerate multiple myeloma progression by increasing the relative abundances of nitrogen-recycling bacteria
Cited by: 52
Author(s): Xingxing Jian, Yinghong Zhu, Jian Ouyang, Yihui Wang, Qian Lei, Jiliang Xia, Yongjun Guan, Jingyu Zhang, Jiaojiao Guo, Yanjuan He, Jinuo Wang, Jian Li, Jingchao Lin, Mingming Su, Guancheng Li, Minghua Wu, Lugui Qiu, Juanjuan Xiang, Lu Xie, Jia Wang, Wen Zhou
Software Mentions: 6
Published: about 6 years ago

10.1186/s42523-020-00042-8

Survey of rumen microbiota of domestic grazing yak during different growth stages revealed novel maturation patterns of four key microbial groups and their dynamic interactions
Cited by: 31
Author(s): Wei Guo, Mi Zhou, Tao Ma, Sisi Bi, Weiwei Wang, Ying Zhang, Xiaodan Huang, Le Luo Guan, Ruijun Long
Software Mentions: 6
Published: about 6 years ago

10.1186/s13073-018-0586-6

Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers
Cited by: 96
Author(s): Vanessa L. Hale, Patricio Jeraldo, Jun Chen, Michael B. Mundy, Jingwen Yao, Sambhawa Priya, Gary Keeney, Kelly Lyke, Jason M. Ridlon, Bryan A. White, Amy J. French, Stephen N. Thibodeau, Christian Diener, Osbaldo Reséndis-Antonio, Jaime Gransee, Tumpa Dutta, Xuan Mai Petterson, Jaeyun Sung, Ran Blekhman, Lisa A. Boardman, David W. Larson, Heidi Nelson, Nicholas Chia
Software Mentions: 6
Published: almost 8 years ago

10.7717/peerj.6674

Epizootic ulcerative syndrome causes cutaneous dysbacteriosis in hybrid snakehead (Channa maculata♀ × Channa argus♂)
Cited by: 6
Author(s): Zhifei Li, Guangjun Wang, Kai Zhang, Wangbao Gong, Ermeng Yu, Jingjing Tian, Jun Xie, Deguang Yu
Software Mentions: 6
Published: over 7 years ago

10.3389/fmicb.2021.701796

L-Canavanine, a Root Exudate From Hairy Vetch (Vicia villosa) Drastically Affecting the Soil Microbial Community and Metabolite Pathways
Cited by: 7
Author(s): Hossein Mardani-Korrani, Masaru Nakayasu, Shinichi Yamazaki, Yosuke Aoki, Rumi Kaida, Takashi Motobayashi, Masaru Kobayashi, Naoko Ohkama‐Ohtsu, Yosei Oikawa, Akifumi Sugiyama, Yoshiharu Fujii
Software Mentions: 6
Published: almost 5 years ago

10.3390/cells8060517

Fecal Microbiota Transplantation Controls Murine Chronic Intestinal Inflammation by Modulating Immune Cell Functions and Gut Microbiota Composition
Cited by: 46
Author(s): Claudia Burrello, Maria Rita Giuffrè, Angeli Dominique Macandog, Angélica Díaz‐Basabe, Fulvia Milena Cribiù, Gianluca Lopez, Francesca Borgo, Luigi Nezi, Flavio Caprioli, Maurizio Vecchi, Federica Facciotti
Software Mentions: 6
Published: about 7 years ago

10.1186/s12866-019-1540-5

Taxonomic features and comparisons of the gut microbiome from two edible fungus-farming termites (Macrotermes falciger; M. natalensis) harvested in the Vhembe district of Limpopo, South Africa
Cited by: 13
Author(s): Stephanie L. Schnorr, Courtney A. Hofman, Shandukani R. Netshifhefhe, Frances D. Duncan, Tanvi P. Honap, Julie J. Lesnik, Cecil M. Lewis
Software Mentions: 6
Published: about 7 years ago

10.3389/fmicb.2021.607601

Temperature Stress Induces Shift From Co-Existence to Competition for Organic Carbon in Microalgae-Bacterial Photobioreactor Community – Enabling Continuous Production of Microalgal Biomass
Cited by: 7
Author(s): Eva Sörenson, Eric Capo, Hanna Farnelid, Elin Lindehoff, Catherine Legrand
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2017.01011

Diversity and Composition of Sulfate-Reducing Microbial Communities Based on Genomic DNA and RNA Transcription in Production Water of High Temperature and Corrosive Oil Reservoir
Cited by: 45
Author(s): Xiaoxiao Li, Jinfeng Liu, Lei Zhou, Serge Maurice Mbadinga, Shi‐Zhong Yang, Ji‐Dong Gu, Bo‐Zhong Mu
Software Mentions: 6
Published: about 9 years ago

10.1371/journal.pone.0249944

Comprehensive profiling of the gut microbiota in patients with chronic obstructive pulmonary disease of varying severity
Cited by: 16
Author(s): Yu-Chi Chiu, Shih‐Wei Lee, Chen‐Wuing Liu, Rebecca Chou-Jui Lin, Yung‐Chia Huang, Tsuo-Hung Lan, Lawrence Shih Hsin Wu
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2020.01624

Phylogenetic Responses of Marine Free-Living Bacterial Community to Phaeocystis globosa Bloom in Beibu Gulf, China
Cited by: 13
Author(s): Nan Li, Huaxian Zhao, Gonglingxia Jiang, Qiangsheng Xu, Junwu Tang, Xiaoli Li, Jiemei Wen, Huimin Liu, Cui Tang, Ke Dong, Zhenjun Kang
Software Mentions: 6
Published: about 6 years ago

10.1186/s40168-021-01108-8

Human gut-derived B. longum subsp. longum strains protect against aging in a d-galactose-induced aging mouse model
Cited by: 13
Author(s): Yue Xiao, Chao Yang, Leilei Yu, Fengwei Tian, Yarong Wu, Hao Zhang, Ruifu Yang, Colin Hill, Yu‐Jun Cui, Qixiao Zhai
Software Mentions: 6
Published: almost 5 years ago

10.1186/s40168-018-0449-9

The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool
Cited by: 113
Author(s): Jo De Vrieze, Ameet J. Pinto, William T. Sloan, Umer Zeeshan Ijaz
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0238396

Comparison between flaming, mowing and tillage weed control in the vineyard: Effects on plant community, diversity and abundance
Cited by: 22
Author(s): Matia Mainardis, Francesco Boscutti, Maria del Mar Rubio Cebolla, Gianfranco Pergher
Software Mentions: 6
Published: almost 6 years ago

10.1093/aob/mcab007

Evolution of floral scent in relation to self-incompatibility and capacity for autonomous self-pollination in the perennial herb Arabis alpina
Cited by: 15
Author(s): Hampus Petrén, Per Toräng, Jon Ågren, Magne Friberg
Software Mentions: 6
Published: over 5 years ago

10.1186/s40168-020-00822-z

Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios
Cited by: 69
Author(s): Lucas Palma Perez Braga, Aymé Spor, Witold Kot, Marie-Christine Breuil, Lars H. Hansen, João Carlos Setúbal, Laurent Philippot
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2017.00744

Alterations in the Rumen Liquid-, Particle- and Epithelium-Associated Microbiota of Dairy Cows during the Transition from a Silage- and Concentrate-Based Ration to Pasture in Spring
Cited by: 36
Author(s): Melanie Schären, Kerstin Kiri, Susanne Riede, Mark C. Gardener, Ulrich Meyer, Jürgen Hummel, Tim Urich, Gerhard Breves, Sven Dänicke
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pone.0237272

Passenger-surface microbiome interactions in the subway of Mexico City
Cited by: 10
Author(s): Daniela Vargas-Robles, Carolina Gonzalez-Cedillo, Apolinar M. Hernández, Luis David Alcaraz, Mariana Peimbert
Software Mentions: 6
Published: almost 6 years ago

10.1186/s40168-017-0389-9

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming
Cited by: 340
Author(s): Kyle Hartman, Marcel G. A. van der Heijden, Raphaël Wittwer, Samiran Banerjee, Jean Claude Walser, Klaus Schlaeppi
Software Mentions: 6
Published: over 8 years ago

10.3389/fmicb.2021.675693

Nitrogen Fertilization and Native C4 Grass Species Alter Abundance, Activity, and Diversity of Soil Diazotrophic Communities
Cited by: 10
Author(s): Jialin Hu, Jonathan D. Richwine, Patrick D. Keyser, Lidong Li, Fei Yao, Sindhu Jagadamma, Jennifer M. DeBruyn
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0235726

Diversity of mosquitoes (Diptera: Culicidae) collected in different types of larvitraps in an Amazon rural settlement
Cited by: 8
Author(s): João Aprígio Guerra de Almeida, Heliana Christy Matos Belchior, Claudia María Ríos-Velásquez, Felipe Arley Costa Pessoa
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0198539

Pink shrimp Farfantepenaeus duorarum spatiotemporal abundance trends along an urban, subtropical shoreline slated for restoration
Cited by: 4
Author(s): Ian C. Zink, Joan A. Browder, Diego Lirman, Joseph E. Serafy
Software Mentions: 6
Published: almost 8 years ago

10.1186/s40168-019-0639-0

Rare gut microbiota associated with breeding success, hormone metabolites and ovarian cycle phase in the critically endangered eastern black rhino
Cited by: 61
Author(s): Rachael E. Antwis, Katie L. Edwards, Bryony Unwin, Susan L. Walker, Susanne Shultz
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0227639

Characterization of black patina from the Tiber River embankments using Next-Generation Sequencing
Cited by: 15
Author(s): Federica Antonelli, Alfonso Esposito, Ludovica Calvo, Valerio Licursi, Philippe Tisseyre, Sandra Ricci, Manuela Romagnoli, Silvano Piazza, Francesca Guerrieri
Software Mentions: 6
Published: over 6 years ago

10.1016/j.xcrm.2020.100077

Microbiota Supplementation with Bifidobacterium and Lactobacillus Modifies the Preterm Infant Gut Microbiota and Metabolome: An Observational Study
Cited by: 108
Author(s): Cristina Alcon-Giner, Matthew J. Dalby, Shabhonam Caim, Jennifer Ketskemety, Alexander Shaw, Kathleen Sim, Melissa A. Lawson, Raymond Kiu, Charlotte Leclaire, Lisa Chalklen, Magdalena Kujawska, Suparna Mitra, Fahmina Fardus‐Reid, Gusztav Belteki, Katherine McColl, Jonathan R. Swann, J. Simon Kroll, Paul Clarke, Lindsay J. Hall
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2021.724980

Appendectomy Is Associated With Alteration of Human Gut Bacterial and Fungal Communities
Cited by: 16
Author(s): Shanshan Cai, Yanyun Fan, Bangzhou Zhang, J. H. Lin, Xiaomin Yang, Yunpeng Liu, Jingjing Liu, Jianlin Ren, Hui Xu
Software Mentions: 6
Published: almost 5 years ago

10.3389/fmicb.2021.614634

Terrestrial Inputs Shape Coastal Bacterial and Archaeal Communities in a High Arctic Fjord (Isfjorden, Svalbard)
Cited by: 14
Author(s): Lisa-Marie Delpech, Tobias R. Vonnahme, Maeve McGovern, Rolf Gradinger, Kim Præbel, Amanda Poste
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2018.00186

Resource Availability Drives Responses of Soil Microbial Communities to Short-term Precipitation and Nitrogen Addition in a Desert Shrubland
Cited by: 70
Author(s): Weiwei She, Yuxuan Bai, Yuqing Zhang, Shugao Qin, Wei Feng, Yanfei Sun, Jufeng Zheng, Bin Wu
Software Mentions: 6
Published: over 8 years ago

10.3390/microorganisms8101566

The Prokaryotic Microbiome of Acropora digitifera is Stable under Short-Term Artificial Light Pollution
Cited by: 6
Author(s): Jake Ivan P. Baquiran, Michael Angelou L. Nada, Celine Luisa D. Campos, Sherry Lyn G. Sayco, Patrick C. Cabaitan, Yaeli Rosenberg, Inbal Ayalon, Oren Levy, Cecilia Conaco
Software Mentions: 6
Published: almost 6 years ago

10.3390/nu13092983

Supplementation of 1-Kestose Modulates the Gut Microbiota Composition to Ameliorate Glucose Metabolism in Obesity-Prone Hosts
Cited by: 10
Author(s): Ayako Watanabe, Takumi Tochio, Yasuhiro Kadota, Motoki Takahashi, Yasuyuki Kitaura, H. Ishikawa, Takanori Yasutake, Masahiro Nakano, Hiroe Shinohara, Toru Kudo, Yuichiro Nishimoto, Yoshinori Mizuguchi, Akihito Endo, Yoshiharu Shimomura
Software Mentions: 6
Published: almost 5 years ago

10.3390/ijms21176283

Differential Profiles of Gut Microbiota and Metabolites Associated with Host Shift of Plutella xylostella
Cited by: 22
Author(s): Fei‐Ying Yang, Hafiz Sohaib Ahmed Saqib, Junhui Chen, Qian‐Qian Ruan, Liette Vasseur, Weiyi He, Minsheng You
Software Mentions: 6
Published: almost 6 years ago

10.3390/microorganisms6030068

Cloacal and Ocular Microbiota of the Endangered Australian Northern Quoll
Cited by: 2
Author(s): Catherine Burke, Delaney Burnard, Adam Polkinghorne, Jonathan K. Webb, Wilhelmina M. Huston
Software Mentions: 6
Published: about 8 years ago

10.7554/eLife.53898

The skin microbiome facilitates adaptive tetrodotoxin production in poisonous newts
Cited by: 44
Author(s): Patric M Vaelli, Kevin R. Theis, Janet E. Williams, Lauren A. O’Connell, James A. Foster, Heather L. Eisthen
Software Mentions: 6
Published: over 6 years ago

10.3390/ijms21176441

Hyperspectral Reflectance of Light-Adapted Leaves Can Predict Both Dark- and Light-Adapted Chl Fluorescence Parameters, and the Effects of Chronic Ozone Exposure on Date Palm (Phoenix dactylifera)
Cited by: 18
Author(s): Lorenzo Cotrozzi, Giacomo Lorenzini, Cristina Nali, Elisa Pellegrini, Vincenzo Saponaro, Yasutomo Hoshika, Leila Arab, Heinz Rennenberg, Elena Paoletti
Software Mentions: 6
Published: almost 6 years ago

10.3390/jof7080607

The Diplodia Tip Blight Pathogen Sphaeropsis sapinea Is the Most Common Fungus in Scots Pines’ Mycobiome, Irrespective of Health Status—A Case Study from Germany
Cited by: 12
Author(s): Kathrin Blumenstein, Johanna Bußkamp, Gitta Jutta Langer, Ewald Langer, Eeva Terhonen
Software Mentions: 6
Published: about 5 years ago

10.1084/jem.20200606

Gut microbiome stability and dynamics in healthy donors and patients with non-gastrointestinal cancers
Cited by: 31
Author(s): Allyson L. Byrd, Menghan Liu, Kei E. Fujimura, Svetlana Lyalina, Deepti R. Nagarkar, Bruno Charbit, Jacob Bergstedt, Étienne Patin, Oliver J. Harrison, Lluı́s Quintana-Murci, Ira Mellman, Darragh Duffy, Matthew L. Albert
Software Mentions: 6
Published: almost 6 years ago

10.1186/s40168-016-0174-1

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure
Cited by: 163
Author(s): Isabelle Laforest‐Lapointe, Christian Messier, Steven W. Kembel
Software Mentions: 6
Published: about 10 years ago

10.1371/journal.pone.0233872

Alpha-, beta-, and gamma-diversity of bacteria varies across habitats
Cited by: 83
Author(s): Kendra E. Walters, Jennifer B. H. Martiny
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmicb.2018.01892

Identification of Halophilic Microbes in Lung Fibrotic Tissue by Oligotyping
Cited by: 11
Author(s): Corina N. D’Alessandro-Gabazza, Celia Méndez–García, Osamu Hataji, Sara Westergaard, Fumiaki Watanabe, Taro Yasuma, Masaaki Toda, Hajime Fujimoto, Kota Nishihama, Kentaro Fujiwara, Osamu Taguchi, Tetsu Kobayashi, Roderick I. Mackie, Isaac Cann, Esteban C. Gabazza
Software Mentions: 6
Published: almost 8 years ago

10.7554/eLife.21887

A phylogenetic transform enhances analysis of compositional microbiota data
Cited by: 239
Author(s): Justin D. Silverman, Alex D. Washburne, Sayan Mukherjee, Lawrence A. David
Software Mentions: 6
Published: over 9 years ago

10.1038/s41396-020-00783-z

Root pathogen diversity and composition varies with climate in undisturbed grasslands, but less so in anthropogenically disturbed grasslands
Cited by: 16
Author(s): Camille S. Delavaux, Josh L. Schemanski, Geoffrey L. House, Alice G. Tipton, Benjamin A. Sikes, James D. Bever
Software Mentions: 6
Published: almost 6 years ago

10.1264/jsme2.ME17170

Co-occurrence Network Reveals the Higher Fragmentation of the Bacterial Community in Kaidu River Than Its Tributaries in Northwestern China
Cited by: 22
Author(s): Yang Hu, Chengrong Bai, Jian Cai, Jiangyu Dai, Kwang‐Tsao Shao, Xiangming Tang, Guang Gao
Software Mentions: 6
Published: over 8 years ago

10.1038/s41396-019-0549-y

Coordinated transformation of the gut microbiome and lipidome of bowhead whales provides novel insights into digestion
Cited by: 16
Author(s): Colin Miller, Henry C Holm, Lara Horstmann, J. C. George, Helen F. Fredricks, Benjamin A. S. Van Mooy, Amy Apprill
Software Mentions: 6
Published: over 6 years ago

10.1038/s41396-020-00749-1

Activity-based cell sorting reveals responses of uncultured archaea and bacteria to substrate amendment
Cited by: 37
Author(s): Nicholas J. Reichart, Zackary J. Jay, Viola Krukenberg, Albert E. Parker, Rachel L. Spietz, Roland Hatzenpichler
Software Mentions: 6
Published: almost 6 years ago

10.3390/microorganisms9020252

Relationships among Fecal, Air, Oral, and Tracheal Microbial Communities in Pigs in a Respiratory Infection Disease Model
Cited by: 7
Author(s): Robert Valeris-Chacín, Amanda Sponheim, Eduardo Fano, Richard E. Isaacson, Randall S. Singer, Joel Nerem, Fernando Leite, Maria Pieters
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0224432

Effectiveness of novel fabrics to resist punctures and lacerations from white shark (Carcharodon carcharias): Implications to reduce injuries from shark bites
Cited by: 8
Author(s): Sasha K. Whitmarsh, Dhara B. Amin, John J. Costi, Joshua D. Dennis, Charlie Huveneers
Software Mentions: 6
Published: over 6 years ago

10.1186/s40168-020-00954-2

Bacterial community assemblages in classroom floor dust of 50 public schools in a large city: characterization using 16S rRNA sequences and associations with environmental factors
Cited by: 10
Author(s): Ju‐Hyeong Park, Angela R. Lemons, Jerry Roseman, Brett J. Green, Jean M. Cox‐Ganser
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8081225

Lactobacillus Mucosae Strain Promoted by a High-Fiber Diet in Genetic Obese Child Alleviates Lipid Metabolism and Modifies Gut Microbiota in ApoE-/- Mice on a Western Diet
Cited by: 19
Author(s): Tianyi Jiang, Huan Wu, Xin Yang, Yue Li, Ziyi Zhang, Feng Chen, Liping Zhao, Chenhong Zhang
Software Mentions: 6
Published: about 6 years ago

10.3390/microorganisms9030492

The Lung Microbiome in Young Children with Cystic Fibrosis: A Prospective Cohort Study
Cited by: 11
Author(s): Barry Linnane, Aaron M. Walsh, Calum J. Walsh, Fiona Crispie, Órla O’Sullivan, Paul D. Cotter, Michael McDermott, J. A. A. Renwick, Paul McNally
Software Mentions: 6
Published: over 5 years ago

10.1186/s12864-019-5797-8

Concurrent and long-term associations between the endometrial microbiota and endometrial transcriptome in postpartum dairy cows
Cited by: 13
Author(s): S.G. Moore, Aaron C. Ericsson, Susanta K. Behura, W. R. Lamberson, Timothy J. Evans, Matthew S. McCabe, S.E. Poock, M.C. Lucy
Software Mentions: 6
Published: about 7 years ago

10.1186/s40168-016-0218-6

The gut microbiota in conventional and serrated precursors of colorectal cancer
Cited by: 160
Author(s): Brandilyn A. Peters, Christine Dominianni, Jean A. Shapiro, Timothy R. Church, Jing Wu, George Miller, Elizabeth Yuen, Hal Freiman, Ian Lustbader, James Salik, Charles Friedlander, Richard B. Hayes, Jiyoung Ahn
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pone.0196130

Aridity drives plant biogeographical sub regions in the Caatinga, the largest tropical dry forest and woodland block in South America
Cited by: 51
Author(s): Augusto C. Silva, Alexandre F. Souza
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0258069

Does algae β-glucan affect the fecal bacteriome in dairy calves?
Cited by: 6
Author(s): G.F. Virgínio, Maria Eduarda Reis, Ana Paula da Silva, Ariany Faria de Toledo, Amanda Moelemberg Cezar, Lucas William Mendes, L.F. Greco, Horácio Montenegro, Luiz Lehmann Coutinho, Carla Maris Machado Bittar
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0204317

Association of metformin administration with gut microbiome dysbiosis in healthy volunteers
Cited by: 85
Author(s): Ilze Elbere, Ineta Kalniņa, Ivars Silamiķelis, Ilze Konrāde, Linda Zaharenko, Kristine Sekace, Ilze Radoviča-Spalviņa, Dāvids Fridmanis, Dita Gudrā, Valdis Pīrāgs, Jānis Kloviņš
Software Mentions: 6
Published: almost 8 years ago

10.1038/s41396-021-00987-x

Isotopic tracing reveals single-cell assimilation of a macroalgal polysaccharide by a few marine Flavobacteria and Gammaproteobacteria
Cited by: 14
Author(s): François Thomas, Nolwen Le Duff, Ting-Di Wu, Aurélie Cébron, Stéphane Uroz, Pascal Riera, Cédric Leroux, Gwenn Tanguy, Erwan Legeay, Jean‐Luc Guerquin‐Kern
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8040509

Contrasting Patterns of the Bacterial Communities in Melting Ponds and Periglacial Rivers of the Zhuxi glacier in the Tibet Plateau
Cited by: 2
Author(s): Yang Hu, Xin Yao, Yuanyuan Wu, Wei Han, Yongqiang Zhou, Xiangming Tang, Kwang‐Tsao Shao, Guang Gao
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2021.623799

Comparative Metagenomics Reveals Microbial Signatures of Sugarcane Phyllosphere in Organic Management
Cited by: 11
Author(s): Ahmad Nuruddin Khoiri, Supapon Cheevadhanarak, Jiraporn Jirakkakul, Sudarat Dulsawat, Peerada Prommeenate, Anuwat Tachaleat, Kanthida Kusonmano, Songsak Wattanachaisaereekul, Sawannee Sutheeworapong
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2019.02571

The Skin Microbiota of Eleutherodactylus Frogs: Effects of Host Ecology, Phylogeny, and Local Environment
Cited by: 9
Author(s): Liza Garcia-Recinos, Patricia A. Burrowes, María Gloria Domínguez-Bello
Software Mentions: 6
Published: almost 7 years ago

10.3390/microorganisms7020037

Fungal Endophyte Communities of Three Agricultural Important Grass Species Differ in Their Response Towards Management Regimes
Cited by: 12
Author(s): Bernd Wemheuer, Torsten Thomas, Franziska Wemheuer
Software Mentions: 6
Published: over 7 years ago

10.1128/mSystems.00550-21

Competitiveness for Nodule Colonization in Sinorhizobium meliloti: Combined In Vitro -Tagged Strain Competition and Genome-Wide Association Analysis
Cited by: 5
Author(s): Agnese Bellabarba, Giovanni Bacci, Francesca Decorosi, Erki Aun, Elisa Azzarello, Maido Remm, Luciana Giovannetti, Carlo Viti, Alessio Mengoni, Francesco Pini
Software Mentions: 6
Published: almost 5 years ago

10.1128/mSystems.01269-20

Structure of Chimpanzee Gut Microbiomes across Tropical Africa
Cited by: 7
Author(s): Clifton P. Bueno de Mesquita, Lauren M. Nichols, Matthew J. Gebert, Caihong Vanderburgh, Gaëlle Bocksberger, Jack D. Lester, Ammie K. Kalan, Paula Dieguez, Maureen S. McCarthy, Anthony Agbor, Paula Álvarez Varona, Ayuk Emmanuel Ayimisin, Mattia Bessone, Rebecca Chancellor, Heather Cohen, Charlotte Coupland, Tobias Deschner, Villard Ebot Egbe, Annemarie Goedmakers, Anne Céline Granjon, Cyril C. Grueter, Josephine Head, R. Adriana Hernández‐Aguilar, Kathryn J. Jeffery, Sorrel Jones, Parag Kadam, M. L. Kaiser, Juan Lapuente, Bradley Larson, Sergio Marrocoli, David Morgan, Badru Mugerwa, Felix Mulindahabi, Emily Neil, Protais Niyigaba, Liliana Pacheco, Alex K. Piel, Martha M. Robbins, Aaron Rundus, Crickette Sanz, Lilah Sciaky, Douglas Sheil, Volker Sommer, Fiona Stewart, Els Ton, Joost van Schijndel, Virginie Vergnes, Erin G. Wessling, Roman M. Wittig, Yisa Ginath Yuh, Kyle Yurkiw, Klaus Zuberbühler, Jan F. Gogarten, Anna Heintz‐Buschart, Alexandra N. Muellner‐Riehl, Christophe Boesch, Hjalmar S. Kühl, Noah Fierer, Mimi Arandjelovic, Robert R. Dunn
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2020.574110

Phytophthora Root Rot Modifies the Composition of the Avocado Rhizosphere Microbiome and Increases the Abundance of Opportunistic Fungal Pathogens
Cited by: 28
Author(s): Itzel A. Solís-García, Oscar Ceballos-Luna, Elvis Marian Cortazar-Murillo, Damaris Desgarennes, Edith Garay‐Serrano, Violeta Patiño-Conde, Edgar Guevara-Avendaño, Alfonso Méndez-Bravo, Frédérique Reverchon
Software Mentions: 6
Published: over 5 years ago

10.1111/1462-2920.14516

Differential ratio amplicons (Ramp) for the evaluation of RNA integrity extracted from complex environmental samples
Cited by: 12
Author(s): Fabien Cholet, Umer Zeeshan Ijaz, Cindy J. Smith
Software Mentions: 6
Published: over 7 years ago

10.1128/mSystems.01369-20

Predicted Metabolic Function of the Gut Microbiota of Drosophila melanogaster
Cited by: 8
Author(s): Nana Y. D. Ankrah, Brandon Barker, Joan Song, Cindy Wu, Jeffery S. McMullen, Angela E. Douglas
Software Mentions: 6
Published: about 5 years ago

10.1128/mSystems.00385-21

Diverse Viruses Carrying Genes for Microbial Extremotolerance in the Atacama Desert Hyperarid Soil
Cited by: 22
Author(s): Yunha Hwang, Janina Rahlff, Dirk Schulze‐Makuch, Michael Schloter, Alexander J. Probst
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2020.526545

Nutrients and Pharmaceuticals Structure Bacterial Core Communities in Urban and Montane Stream Biofilms
Cited by: 4
Author(s): Elizabeth M. Ogata, Michelle A. Baker, Emma J. Rosi, Trevor B. Smart, Donald Long, Zachary T. Aanderud
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0210331

Atlantic West Ophiothrix spp. in the scope of integrative taxonomy: Confirming the existence of Ophiothrix trindadensis Tommasi, 1970
Cited by: 12
Author(s): Renata Alitto, A. Cecília Z. Amaral, Letícia Dias de Oliveira, Helena Serrano, Karin Regina Seger, Pablo Damian Borges Guilherme, Maikon Di Domênico, Ana B. Christensen, Luciana Bolsoni Lourenço, Marcos Tavares, Michela Borges
Software Mentions: 6
Published: over 7 years ago

10.1186/s40168-015-0069-6

Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure
Cited by: 108
Author(s): Adrienne B. Narrowe, Munira Albuthi-Lantz, Erin P. Smith, Kimberly J Bower, Timberley M. Roane, Alan M. Vajda, Christopher S. Miller
Software Mentions: 6
Published: over 11 years ago

10.3389/fmicb.2018.00381

The Impact of Maltitol-Sweetened Chewing Gum on the Dental Plaque Biofilm Microbiota Composition
Cited by: 16
Author(s): Bart J. F. Keijser, Tim J. van den Broek, Dagmar Else Slot, Lodewic van Twillert, Jolanda Kool, Clémentine Thabuis, Michel Ossendrijver, Fridus A. Van der Weijden, R.C. Montijn
Software Mentions: 6
Published: over 8 years ago

10.1111/1751-7915.13450

Environmental filtering increases with elevation for the assembly of gut microbiota in wild pikas
Cited by: 47
Author(s): Huan Li, Rui Zhou, Jun Zhu, Xiaodan Huang, Jiapeng Qu
Software Mentions: 6
Published: about 7 years ago

10.3389/fmicb.2018.00651

How Does Salinity Shape Bacterial and Fungal Microbiomes of Alnus glutinosa Roots?
Cited by: 53
Author(s): Dominika Thiem, Marcin Gołębiewski, Piotr Hulisz, Agnieszka Piernik, Katarzyna Hrynkiewicz
Software Mentions: 6
Published: over 8 years ago

10.1186/s40168-019-0734-2

Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics
Cited by: 94
Author(s): Chengying Shi, Leen Beller, Ward Deboutte, Kwe Claude Yinda, Leen Delang, Anubis Vega-Rúa, Anna‐Bella Failloux, Jelle Matthijnssens
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmicb.2014.00541

Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland
Cited by: 71
Author(s): Antje Gittel, Jiří Bárta, Iva Kohoutová, Jörg Schnecker, Birgit Wild, Petr Čapek, Christina Kaiser, Vigdis Torsvik, Andreas Richter, Christa Schleper, Tim Urich
Software Mentions: 6
Published: almost 12 years ago

10.1128/mSystems.00712-21

Activity-Based Cell Sorting Reveals Resistance of Functionally Degenerate Nitrospira during a Press Disturbance in Nitrifying Activated Sludge
Cited by: 4
Author(s): Maxwell B. W. Madill, Yaqian Luo, Pranav Sampara, Ryan M. Ziels
Software Mentions: 6
Published: almost 5 years ago

10.3389/fmicb.2018.02619

Stochastic and Deterministic Effects of a Moisture Gradient on Soil Microbial Communities in the McMurdo Dry Valleys of Antarctica
Cited by: 37
Author(s): Kevin C. Lee, Tancredi Caruso, Stephen Archer, Len N. Gillman, Maggie C. Y. Lau, S. Craig Cary, Charles K. Lee, Stephen B. Pointing
Software Mentions: 6
Published: almost 8 years ago

10.3390/microorganisms8121978

Not That Close to Mommy: Horizontal Transmission Seeds the Microbiome Associated with the Marine Sponge Plakina cyanorosea
Cited by: 8
Author(s): Bruno Francesco Rodrigues de Oliveira, Isabelle Rodrigues Lopes, Anna Luiza Bauer Canellas, Guilherme Muricy, Alan D. W. Dobson, Marinella Silva Laport
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2020.575625

Plant Genotype Influences Physicochemical Properties of Substrate as Well as Bacterial and Fungal Assemblages in the Rhizosphere of Balsam Poplar
Cited by: 9
Author(s): Karelle Rheault, Denis Lachance, Marie-Josée Morency, Évelyne Thiffault, Marie Guittonny, Nathalie Isabel, Christine Martineau, Armand Séguin
Software Mentions: 6
Published: over 5 years ago

10.1128/mSystems.00016-19

A Novel Sparse Compositional Technique Reveals Microbial Perturbations
Cited by: 255
Author(s): Cameron Martino, James T. Morton, Clarisse Marotz, Luke R. Thompson, Anupriya Tripathi, Rob Knight, Karsten Zengler
Software Mentions: 6
Published: over 7 years ago

10.3389/fmicb.2021.723682

Establishment of Gut Microbiome During Early Life and Its Relationship With Growth in Endangered Crested Ibis (Nipponia nippon)
Cited by: 13
Author(s): Ying Zhu, Yudong Li, Hai-Qiong Yang, Ke He, Keyi Tang
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2016.00372

A Combination of Biochar–Mineral Complexes and Compost Improves Soil Bacterial Processes, Soil Quality, and Plant Properties
Cited by: 62
Author(s): Jun Ye, Rui Zhang, Shaun Nielsen, Stephen Joseph, Danfeng Huang, Torsten Thomas
Software Mentions: 6
Published: over 10 years ago

10.1038/s41398-021-01531-3

Gut microbial biomarkers for the treatment response in first-episode, drug-naïve schizophrenia: a 24-week follow-up study
Cited by: 22
Author(s): Xiuxia Yuan, Yunpeng Wang, Xue Li, Jiajun Jiang, Yulin Kang, Lijuan Pang, Peifen Zhang, Ang Li, Luxian Lv, Ole A. Andreassen, Xiaoduo Fan, Shaohua Hu, Xueqin Song
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0229001

Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome
Cited by: 45
Author(s): Samuel J. Bowers, Fernando Vargas, Antonio González, Shannon He, Peng Jiang, Pieter C. Dorrestein, Rob Knight, Kenneth P. Wright, Christopher A. Lowry, Monika Fleshner, Martha Hotz Vitaterna, Fred W. Turek
Software Mentions: 6
Published: over 6 years ago

10.3390/microorganisms8071004

Relationship between the Oral and Vaginal Microbiota of South African Adolescents with High Prevalence of Bacterial Vaginosis
Cited by: 11
Author(s): Christina Balle, Rachel Esra, Enock Havyarimana, Shameem Z. Jaumdally, Katie Lennard, Iyaloo N. Konstantinus, Shaun Barnabas, Anna‐Ursula Happel, Katherine Gill, Tanya Pidwell, Jairam R. Lingappa, Hoyam Gamieldien, Linda‐Gail Bekker, Jo‐Ann S. Passmore, Heather B. Jaspan
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-021-98089-3

Biopsy bacterial signature can predict patient tissue malignancy
Cited by: 10
Author(s): Glenn Hogan, Julia Eckenberger, Neegam Narayanen, Sidney P. Walker, Marcus J. Claesson, Mark Corrigan, Deirdre O’Hanlon, Mark Tangney
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-021-98724-z

Novel attempt at discrimination of a bullet-shaped siphonophore (Family Diphyidae) using matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-ToF MS)
Cited by: 1
Author(s): Nayeon Park, Jisu Yeom, Raehyuk Jeong, Wonchoel Lee
Software Mentions: 6
Published: almost 5 years ago

10.1186/s40168-017-0325-z

Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome
Cited by: 71
Author(s): David Casero, Kirandeep Gill, Vijayalakshmi Sridharan, Igor Koturbash, Gregory A. Nelson, Martin Hauer‐Jensen, Marjan Boerma, Jonathan Braun, Amrita K. Cheema
Software Mentions: 6
Published: almost 9 years ago

10.1371/journal.pone.0221408

Distinct temporal dynamics of planktonic archaeal and bacterial assemblages in the bays of the Yellow Sea
Cited by: 16
Author(s): Jong-Geol Kim, Joo-Han Gwak, Man‐Young Jung, Sung‐Uk An, Jung‐Ho Hyun, Sanghoon Kang, Sung‐Keun Rhee
Software Mentions: 6
Published: almost 7 years ago

10.3390/microorganisms9051060

Microbial Composition of SCOBY Starter Cultures Used by Commercial Kombucha Brewers in North America
Cited by: 42
Author(s): Keisha Harrison, Chris Curtin
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-92405-7

Microplastics accumulate fungal pathogens in terrestrial ecosystems
Cited by: 73
Author(s): Gerasimos Gkoutselis, Stephan Rohrbach, Janno Harjes, Martin Obst, Andreas Brachmann, Marcus A. Horn, Gerhard Rambold
Software Mentions: 6
Published: about 5 years ago

10.3390/metabo11050269

Influence of Extraction Solvent on Nontargeted Metabolomics Analysis of Enrichment Reactor Cultures Performing Enhanced Biological Phosphorus Removal (EBPR)
Cited by: 4
Author(s): Nay Min Min Thaw Saw, Pipob Suwanchaikasem, Rogelio Zuniga-Montanez, Guanglei Qiu, Ezequiel M. Marzinelli, Stefan Wuertz, Rohan B.H. Williams
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms7120595

Dynamic Succession of Microbiota during Ensiling of Whole Plant Corn Following Inoculation with Lactobacillus buchneri and Lactobacillus hilgardii Alone or in Combination
Cited by: 40
Author(s): Pascal Drouin, Julien Tremblay, Frédérique Chaucheyras‐Durand
Software Mentions: 6
Published: over 6 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292