10.1093/femsyr/foaa044

Pseudohyphal differentiation in Komagataella phaffii: investigating the FLO gene family
Cited by: 3
Author(s): Sonakshi De, Corinna Rebnegger, Josef W. Moser, Nadine E Tatto, Alexandra B. Graf, Diethard Mattanovich, Brigitte Gasser
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmolb.2016.00026

biosigner: A New Method for the Discovery of Significant Molecular Signatures from Omics Data
Cited by: 46
Author(s): Philippe Rinaudo, Samia Boudah, Christophe Junot, Etienne Thévenot
Software Mentions: 6
Published: about 10 years ago

10.1186/s12917-019-2205-1

Acute changes in the colonic microbiota are associated with large intestinal forms of surgical colic
Cited by: 8
Author(s): Shebl E. Salem, Thomas W. Maddox, Philipp Antczak, Julian M. Ketley, Nicola Williams, Debra Archer
Software Mentions: 6
Published: over 6 years ago

10.1186/s42523-020-0022-2

Antibiotic resistance gene sharing networks and the effect of dietary nutritional content on the canine and feline gut resistome
Cited by: 15
Author(s): Younjung Kim, Marcus H. Y. Leung, Wendy Kwok, Guillaume Fournié, Jun Li, Patrick K. H. Lee, Dirk U. Pfeiffer
Software Mentions: 6
Published: over 6 years ago

10.1186/1471-2105-13-76

EpiFire: An open source C++ library and application for contact network epidemiology
Cited by: 34
Author(s): Thomas J. Hladish, Eugene Melamud, Luis Barrera, Alison P. Galvani, Lauren Ancel Meyers
Software Mentions: 6
Published: about 14 years ago

10.12688/f1000research.20887.3

RCy3: Network biology using Cytoscape from within R
Cited by: 72
Author(s): Julia Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R. Pico
Software Mentions: 6
Published: over 6 years ago

10.7717/peerj.3730

Uncovering unseen fungal diversity from plant DNA banks
Cited by: 16
Author(s): Erin M. Datlof, Anthony S. Amend, Kamala Earl, J. Hayward, Clifford W. Morden, Rachael Wade, Geoffrey Zahn, Nicole A. Hynson
Software Mentions: 6
Published: almost 9 years ago

10.1016/j.dib.2020.105757

The molecular entities in linked data dataset
Cited by: 1
Author(s): Dominik Tomaszuk, Łukasz Szeremeta
Software Mentions: 6
Published: almost 6 years ago

10.3390/microorganisms8060883

Linking Shifts in Bacterial Community Composition and Function with Changes in the Dissolved Organic Matter Pool in Ice-Covered Baiyangdian Lake, Northern China
Cited by: 13
Author(s): Shilei Zhou, Yifei Sun, Ming-Hui Yu, Zhenpeng Shi, Hang Zhang, Rui-Zhe Peng, Zaixing Li, Jiansheng Cui, Xiang Liu
Software Mentions: 6
Published: about 6 years ago

10.1186/s12966-015-0228-y

International study of perceived neighbourhood environmental attributes and Body Mass Index: IPEN Adult study in 12 countries
Cited by: 52
Author(s): Ilse De Bourdeaudhuij, Delfien Van Dyck, Deborah Salvo, Rachel Davey, Rodrigo Siqueira Reis, Grant Schofield, Olga L. Sarmiento, Josef Mitáš, Lars Breum Christiansen, Duncan J. Macfarlane, Takemi Sugiyama, Inés Aguinaga-Ontoso, Neville Owen, Terry L. Conway, James F. Sallis, Ester Cerin
Software Mentions: 6
Published: about 11 years ago

10.1093/emph/eow013

The low prevalence of female smoking in the developing world: gender inequality or maternal adaptations for fetal protection?
Cited by: 28
Author(s): Edward H. Hagen, Melissa J. Garfield, Roger J. Sullivan
Software Mentions: 6
Published: over 10 years ago

10.7554/eLife.62939

Social groups buffer maternal loss in mountain gorillas
Cited by: 14
Author(s): Robin E. Morrison, Winnie Eckardt, Fernando Colchero, Veronica Vecellio, Tara S. Stoinski
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2019.00904

Advances and Challenges in Metatranscriptomic Analysis
Cited by: 217
Author(s): Migun Shakya, Chien‐Chi Lo, Patrick Chain
Software Mentions: 6
Published: almost 7 years ago

10.1186/s12868-020-0549-x

Capturing multiple interaction effects in L1 and L2 object-naming reaction times in healthy bilinguals: a mixed-effects multiple regression analysis
Cited by: 1
Author(s): Severin Schramm, N Tanigawa, Lorena Tussis, Bernhard Meyer, Nico Sollmann, Sandro M. Krieg
Software Mentions: 6
Published: over 6 years ago

10.3390/toxins11110624

Analysis of the Use of Cylindrospermopsin and/or Microcystin-Contaminated Water in the Growth, Mineral Content, and Contamination of Spinacia oleracea and Lactuca sativa
Cited by: 22
Author(s): María Llana-Ruiz-Cabello, Ángeles Jos, Ana M. Cameán, Flávio Luís de Oliveira, Aldo Barreiro Felpeto, J.A.T. Machado, Joana Azevedo, Edgar Pinto, Agostinho Almeida, Alexandre Campos, Vítor Vasconcelos, Marisa Freitas
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0189338

Long disordered regions of the C-terminal domain of Abelson tyrosine kinase have specific and additive functions in regulation and axon localization
Cited by: 3
Author(s): Han S J Cheong, Mark F. A. VanBerkum
Software Mentions: 6
Published: over 8 years ago

10.1002/ece3.6267

Adaptation potential of the copepod <i>Eurytemora affinis</i> to a future warmer Baltic Sea
Cited by: 7
Author(s): Konrad Karlsson, Monika Winder
Software Mentions: 6
Published: about 6 years ago

10.1016/j.cels.2018.08.001

Machine Learning Predicts the Yeast Metabolome from the Quantitative Proteome of Kinase Knockouts
Cited by: 77
Author(s): Aleksej Zelezniak, Jakob Vowinckel, Floriana Capuano, Christoph B. Messner, Vadim Demichev, Nicole Polowsky, Michael Mülleder, Stephan Kamrad, Bernd Klaus, Markus A. Keller, Markus Ralser
Software Mentions: 6
Published: almost 8 years ago

10.1186/s13059-020-1942-6

A framework for transcriptome-wide association studies in breast cancer in diverse study populations
Cited by: 60
Author(s): Arjun Bhattacharya, Montserrat García‐Closas, Andrew F. Olshan, Charles M. Perou, Melissa A. Troester, Michael I. Love
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.ppat.1008179

Molecular dating and viral load growth rates suggested that the eclipse phase lasted about a week in HIV-1 infected adults in East Africa and Thailand
Cited by: 24
Author(s): Morgane Rolland, Sodsai Tovanabutra, Bethany L. Dearlove, Yifan Li, Christopher L. Owen, Éric Lewitus, Eric Sanders‐Buell, Meera Bose, Anne Marie O’Sullivan, Raabya Rossenkhan, Jan Phillipus Lourens Labuschagne, Paul T. Edlefsen, Daniel B. Reeves, Gustavo H. Kijak, Shana Miller, Kultida Poltavee, Jenica Lee, Lydia Bonar, Elizabeth A. Harbolick, Bahar Ahani, Phuc Pham, Hannah Kibuuka, Lucas Maganga, Sorachai Nitayaphan, Fred Sawe, Leigh Anne Eller, Robert A. Gramzinski, Jerome H. Kim, Nelson L. Michael, Merlin L. Robb
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0211608

Managing genomic variant calling workflows with Swift/T
Cited by: 7
Author(s): Azza E. Ahmed, Jacob R Heldenbrand, Yan W. Asmann, Faisal M. Fadlelmola, Daniel S. Katz, Katherine Kendig, Matthew Kendzior, Tiffany Li, Yingxue Ren, Elliott Rodriguez, Matthew Weber, Justin M. Wozniak, Jennie Zermeno, Liudmila Sergeevna Mainzer
Software Mentions: 6
Published: almost 7 years ago

10.3389/fpls.2019.00698

PropaNet: Time-Varying Condition-Specific Transcriptional Network Construction by Network Propagation
Cited by: 5
Author(s): Hongryul Ahn, Kyuri Jo, Dabin Jeong, Minwoo Pak, Jihye Hur, Wi Hoon Jung, Sun Kim
Software Mentions: 6
Published: about 7 years ago

10.3389/fcell.2021.682002

Identification of CDK2-Related Immune Forecast Model and ceRNA in Lung Adenocarcinoma, a Pan-Cancer Analysis
Cited by: 34
Author(s): Tingting Liu, Rui Li, Huo Chen, Jianping Li, Jie Yao, Xiu-Li Ji, Yi-Qing Qu
Software Mentions: 6
Published: almost 5 years ago

10.7717/peerj.997

Deep sequencing of the viral<i>phoH</i>gene reveals temporal variation, depth-specific composition, and persistent dominance of the same viral<i>phoH</i>genes in the Sargasso Sea
Cited by: 34
Author(s): Dawn B. Goldsmith, Rachel Parsons, Damitu Beyene, Peter Salamon, Mya Breitbart
Software Mentions: 6
Published: about 11 years ago

10.1371/journal.pone.0212668

Determinants of the little auk (Alle alle) breeding colony location and size in W and NW coast of Spitsbergen
Cited by: 28
Author(s): Liliana Katarzyna Keslinka, Katarzyna Wojczulanis‐Jakubas, Dariusz Jakubas, Grzegorz Neubauer
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0047508

Early Social Networks Predict Survival in Wild Bottlenose Dolphins
Cited by: 177
Author(s): Margaret A. Stanton, Janet Mann
Software Mentions: 6
Published: over 13 years ago

10.1371/journal.pone.0193759

Sharing-based social capital associated with harvest production and wealth in the Canadian Arctic
Cited by: 25
Author(s): Elspeth Ready
Software Mentions: 6
Published: over 8 years ago

10.1093/g3journal/jkab248

Harnessing multivariate, penalized regression methods for genomic prediction and QTL detection of drought-related traits in grapevine
Cited by: 5
Author(s): Charlotte Brault, Agnès Doligez, Le Cunff, Aude Coupel‐Ledru, Thierry Simonneau, Julien Chiquet, Patrice This, Timothée Flutre
Software Mentions: 6
Published: almost 5 years ago

10.1007/s00415-020-09859-4

Posterior circulation stroke: machine learning-based detection of early ischemic changes in acute non-contrast CT scans
Cited by: 12
Author(s): Helge Kniep, Peter Sporns, Gabriel Broocks, André Kemmling, Jawed Nawabi, Thilo Rusche, Jens Fiehler, Uta Hanning
Software Mentions: 6
Published: about 6 years ago

10.3390/microorganisms8030405

Agroforestry Management Systems Drive the Composition, Diversity, and Function of Fungal and Bacterial Endophyte Communities in Theobroma Cacao Leaves
Cited by: 19
Author(s): Franziska Wemheuer, Dirk Hölscher, Bernd Wemheuer, Rolf Daniel, Stefan Vidal, Hervé Bertin Bisseleua Daghela
Software Mentions: 6
Published: over 6 years ago

10.1016/j.isci.2021.102452

Scaling relation between genome length and particle size of viruses provides insights into viral life history
Cited by: 8
Author(s): Harshali V. Chaudhari, Mandar M. Inamdar, Kiran Kondabagil
Software Mentions: 6
Published: about 5 years ago

10.1186/s12885-021-08106-x

Nomograms to predict the prognosis in locally advanced oral squamous cell carcinoma after curative resection
Cited by: 10
Author(s): Zhiliang Nie, Pengcheng Zhao, Yishan Shang, Bo Sun
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pcbi.1007509

Clustering-independent analysis of genomic data using spectral simplicial theory
Cited by: 19
Author(s): Kiya W. Govek, Venkata S. Yamajala, Pablo G. Cámara
Software Mentions: 6
Published: over 6 years ago

10.12688/wellcomeopenres.16791.1

Ultraplex: A rapid, flexible, all-in-one fastq demultiplexer
Cited by: 9
Author(s): Oscar G. Wilkins, Charlotte Capitanchik, Nicholas M. Luscombe, Jernej Ule
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pgen.1007276

Argonaute2 and LaminB modulate gene expression by controlling chromatin topology
Cited by: 19
Author(s): Ezequiel Názer, Ryan Dale, Madoka Chinen, Behram Radmanesh, Elissa P. Lei
Software Mentions: 6
Published: over 8 years ago

10.7717/peerj.791

A reproducible approach to high-throughput biological data acquisition and integration
Cited by: 12
Author(s): Daniela Börnigen, Yo Sup Moon, Ali Rahnavard, Levi Waldron, Lauren J. McIver, Afrah Shafquat, Eric A. Franzosa, Larissa Miropolsky, Christopher J. Sweeney, Xochitl C. Morgan, Wendy S. Garrett, Curtis Huttenhower
Software Mentions: 6
Published: over 11 years ago

10.3389/fonc.2020.01383

Prognostic Molecular Signatures for Metastatic Potential in Clinically Low-Risk Stage I and II Clear Cell Renal Cell Carcinomas
Cited by: 2
Author(s): Andrew Shih, Neal Murphy, Zachary Kozel, Paras Shah, Oksana Yaskiv, Houman Khalili, Anthony Liew, Louis R. Kavoussi, Simon Hall, Manish Vira, Xinhua Zhu, Annette T. Lee
Software Mentions: 6
Published: almost 6 years ago

10.1002/ece3.7729

Damselfly eggs alter their development rate in the presence of an invasive alien cue but not a native predator cue
Cited by: 7
Author(s): Andrzej Antoł, Szymon Śniegula
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-017-09738-5

Anosmia impairs homing orientation but not foraging behaviour in free-ranging shearwaters
Cited by: 26
Author(s): Oliver Padget, Gaia Dell’Ariccia, Ana Gagliardo, Jacob González‐Solís, Tim Guilford
Software Mentions: 6
Published: almost 9 years ago

10.1371/journal.pntd.0005246

The Biomphalaria glabrata DNA methylation machinery displays spatial tissue expression, is differentially active in distinct snail populations and is modulated by interactions with Schistosoma mansoni
Cited by: 39
Author(s): Kathrin K. Geyer, Umar Niazi, David Timothy Duval, Céline Cosseau, Chad Tomlinson, Iain W. Chalmers, Martin Swain, David Cutress, Utibe Bickham-Wright, Sabrina E. Munshi, Christoph Grunau, Timothy P. Yoshino, Karl F. Hoffmann
Software Mentions: 6
Published: about 9 years ago

10.3390/cells10030644

Highly Species-Specific Foliar Metabolomes of Diverse Woody Species and Relationships with the Leaf Economics Spectrum
Cited by: 7
Author(s): Rabea Schweiger, Eva Castells, Luca Da Sois, Jordi Martínez‐Vilalta, Caroline Müller
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0003415

Gene Expression Profiling of Two Distinct Neuronal Populations in the Rodent Spinal Cord
Cited by: 10
Author(s): Jesper Ryge, Ann-Charlotte Westerdahl, Preben Alstrøm, Ole Kiehn
Software Mentions: 6
Published: over 17 years ago

10.12688/f1000research.24345.2

Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz
Cited by: 0
Author(s): Justin Wagner, Jayaram Kancherla, Domenick J. Braccia, James Matsumara, Victor Felix, Jonathan Crabtree, Anup Mahurkar, Héctor Corrada Bravo
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0235159

Zooplankton biogeographic boundaries in the California Current System as determined from metabarcoding
Cited by: 13
Author(s): Kathleen J. Pitz, Jinchen Guo, Shannon B. Johnson, Tracy L. Campbell, Haibin Zhang, Robert C. Vrijenhoek, Francisco P. Chávez, Jonathan B. Geller
Software Mentions: 6
Published: about 6 years ago

10.1016/j.dib.2020.106424

An exploratory assessment of a multidimensional healthcare and economic data on COVID-19 in Nigeria
Cited by: 7
Author(s): Ezekiel Ogundepo, Joseph Bamidele Awotunde, Olubayo Adekanmbi, Olalekan Akinsande, Oluwatobi Banjo, Emeka Ogbuju, Francisca Oladipo, Olawale Victor Abimbola, Ehizokhale Oseghale, Oluwatobi Babajide
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-020-74428-8

Large seasonal and spatial variation in nano- and microphytoplankton diversity along a Baltic Sea—North Sea salinity gradient
Cited by: 6
Author(s): Malin Olofsson, James G. Hagan, Bengt Karlson, Lars Gamfeldt
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8111754

Comparison of the Performance and Microbial Community Structure of Two Outdoor Pilot-Scale Photobioreactors Treating Digestate
Cited by: 9
Author(s): Aïda Bani, Katia Parati, Anna Pozzi, Cristina Previtali, Graziella Bongioni, Andrea Pizzera, Elena Ficara, Micol Bellucci
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0196130

Aridity drives plant biogeographical sub regions in the Caatinga, the largest tropical dry forest and woodland block in South America
Cited by: 51
Author(s): Augusto C. Silva, Alexandre F. Souza
Software Mentions: 6
Published: about 8 years ago

10.3389/fpsyt.2021.716722

Transcriptomics Analysis Reveals Shared Pathways in Peripheral Blood Mononuclear Cells and Brain Tissues of Patients With Schizophrenia
Cited by: 6
Author(s): Xuemian Song, Yiyun Liu, Juncai Pu, Siwen Gui, Xiaogang Zhong, Xiaopeng Chen, Weiyi Chen, Xiang Chen, Yue Chen, Haiyang Wang, Ke Cheng, Libo Zhao, Peng Xie
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0070038

Integrating Life Stages into Ecological Niche Models: A Case Study on Tiger Beetles
Cited by: 9
Author(s): Ángela Taboada, Henrik von Wehrden, Thorsten Aßmann
Software Mentions: 6
Published: almost 13 years ago

10.1016/j.csbj.2020.05.017

Constructing knowledge graphs and their biomedical applications
Cited by: 115
Author(s): David N. Nicholson, Casey S. Greene
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0243746

Image-based screen capturing misfolding status of Niemann-Pick type C1 identifies potential candidates for chaperone drugs
Cited by: 7
Author(s): Ryuta Shioi, Fumika Karaki, Hirosuke Yoshioka, Tomomi Noguchi‐Yachide, Minoru Ishikawa, Kosuke Dodo, Yuichi Hashimoto, Mikiko Sodeoka, Kenji Ohgane
Software Mentions: 6
Published: over 5 years ago

10.18632/aging.103626

A novel hypoxic tumor microenvironment signature for predicting the survival, progression, immune responsiveness and chemoresistance of glioblastoma: a multi-omic study
Cited by: 6
Author(s): Zihao Wang, Lu Gao, Xiaopeng Guo, Yaning Wang, Yu Wang, Wenbin Ma, Yi Guo, Bing Xing
Software Mentions: 6
Published: almost 6 years ago

10.1002/1878-0261.12707

Classification of diffuse lower‐grade glioma based on immunological profiling
Cited by: 40
Author(s): Fan Wu, Zhiliang Wang, Kuan‐Yu Wang, Guanzhang Li, Rui‐Chao Chai, Yuqing Liu, Haiyan Jiang, You Zhai, Yuemei Feng, Zheng Zhao, Wei Zhang
Software Mentions: 6
Published: about 6 years ago

10.15252/emmm.202012118

The mutational landscape of the <scp>SCAN</scp> ‐B real‐world primary breast cancer transcriptome
Cited by: 30
Author(s): Christian Brueffer, Sergii Gladchuk, Christof Winter, Johan Vallon‐Christersson, Cecilia Hegardt, Jari Häkkinen, Anthony George, Yilun Chen, Anna Ehinger, Christer Larsson, Niklas Loman, Martin Malmberg, Lisa Rydén, Åke Borg, Lao H. Saal
Software Mentions: 6
Published: almost 6 years ago

10.3390/s21020618

Coupling Analytical Models and Machine Learning Methods for Fast and Reliable Resolution of Effects in Multifrequency Eddy-Current Sensors
Cited by: 6
Author(s): Sergey Kucheryavskiy, А. В. Егоров, V. V. Polyakov
Software Mentions: 6
Published: over 5 years ago

10.1186/s12983-016-0174-9

Crown-of-thorns starfish have true image forming vision
Cited by: 19
Author(s): Ronald Petie, Anders Garm, Michael R. Hall
Software Mentions: 6
Published: almost 10 years ago

10.1371/journal.pone.0164542

IGSA: Individual Gene Sets Analysis, including Enrichment and Clustering
Cited by: 3
Author(s): Lingxiang Wu, Xiujie Chen, Denan Zhang, Wubing Zhang, Lei Liu, Hongzhe Ma, Jingbo Yang, Hongbo Xie, Bo Liu, Qing Jin
Software Mentions: 6
Published: over 9 years ago

10.1186/s13148-018-0593-x

Significantly altered peripheral blood cell DNA methylation profile as a result of immediate effect of metformin use in healthy individuals
Cited by: 19
Author(s): Ilze Elbere, Ivars Silamiķelis, Monta Ustinova, Ineta Kalniņa, Linda Zaharenko, Raitis Pečulis, Ilze Konrāde, Diana M. Ciuculete, Christina Zhukovsky, Dita Gudrā, Ilze Radoviča-Spalviņa, Dāvids Fridmanis, Valdis Pīrāgs, Helgi B. Schiöth, Jānis Kloviņš
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0124477

Can Population-Level Laterality Stem from Social Pressures? Evidence from Cheek Kissing in Humans
Cited by: 25
Author(s): Amandine Chapelain, Pauline Pimbert, Lydiane Aubé, Océane Perrocheau, Gilles Debunne, Alain Bellido, Catherine Blois‐Heulin
Software Mentions: 6
Published: almost 11 years ago

10.1186/s12859-014-0396-9

Pathomx: an interactive workflow-based tool for the analysis of metabolomic data
Cited by: 22
Author(s): Martin Fitzpatrick, Catherine McGrath, Stephen P. Young
Software Mentions: 6
Published: over 11 years ago

10.1186/s13148-021-01017-5

Genetic, epigenetic, and environmental factors controlling oxytocin receptor gene expression
Cited by: 36
Author(s): Joshua S. Danoff, Kelly L. Wroblewski, Andrew J. Graves, Graham C. Quinn, Allison M. Perkeybile, William M. Kenkel, Travis S. Lillard, Hardik I. Parikh, Hudson Golino, Simon Gregory, C. Sue Carter, Karen L. Bales, Jessica J. Connelly
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0083515

Narrow-Front Loop Migration in a Population of the Common Cuckoo Cuculus canorus, as Revealed by Satellite Telemetry
Cited by: 77
Author(s): Mikkel Willemoes, Roine Strandberg, Raymond H. G. Klaassen, Anders P. Tøttrup, Yannis Vardanis, Paul W. Howey, Kasper Thorup, Martin Wikelski, Thomas Alerstam
Software Mentions: 6
Published: over 12 years ago

10.1038/s41598-019-47374-3

Age-dependent carry-over effects in a long-distance migratory bird
Cited by: 6
Author(s): Cosme López‐Calderón, Javier Balbontín Arenas, Keith A. Hobson, Anders Pape Møller
Software Mentions: 6
Published: almost 7 years ago

10.3389/fimmu.2018.01634

Robust B Cell Responses Predict Rapid Resolution of Lyme Disease
Cited by: 22
Author(s): Lisa K. Blum, Julia Z. Adamska, Dale S. Martin, Alison W. Rebman, Serra E. Elliott, Richard R.L. Cao, Monica E. Embers, Mark J. Soloski, William H. Robinson
Software Mentions: 6
Published: almost 8 years ago

10.1371/journal.pone.0203361

In silico drug absorption tract: An agent-based biomimetic model for human oral drug absorption
Cited by: 3
Author(s): Jianyuan Deng, Anika Jhandey, Xiao Zhu, Zhibo Yang, Kin Fu Patrick Yik, Zhong Zuo, Tai Ning Lam
Software Mentions: 6
Published: almost 8 years ago

10.3389/fcell.2021.622021

Identification of Potential ceRNA Network and Patterns of Immune Cell Infiltration in Systemic Sclerosis-Associated Interstitial Lung Disease
Cited by: 6
Author(s): Qiuhong Wu, Yang Liu, Yan Xie, Shixiong Wei, Yi Liu
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0019024

Functional Genomics Unique to Week 20 Post Wounding in the Deep Cone/Fat Dome of the Duroc/Yorkshire Porcine Model of Fibroproliferative Scarring
Cited by: 21
Author(s): Loren H. Engrav, Christopher K. Tuggle, Kathleen F. Kerr, Kehao Zhu, Surawej Numhom, Oliver Couture, Richard P. Beyer, Anne M. Hocking, Gretchen J. Carrougher, Maria Luiza Christóvão Ramos, Matthew B. Klein, Nicole S. Gibran
Software Mentions: 6
Published: about 15 years ago

10.7554/eLife.53933

Heterogeneous T cell motility behaviors emerge from a coupling between speed and turning in vivo
Cited by: 33
Author(s): Elizabeth R. Jerison, Stephen R. Quake
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0219874

Decision-making flexibility in New Caledonian crows, young children and adult humans in a multi-dimensional tool-use task
Cited by: 7
Author(s): Rachael Miller, Romana Gruber, Anna Frohnwieser, Martina Schiestl, Sarah A. Jelbert, Russell D. Gray, Markus Boeckle, Alexander Taylor, Nicola S. Clayton
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0210467

Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets
Cited by: 0
Author(s): Katerina Taškova, Jean-Fred Fontaine, Ralf Mrowka, Miguel A. Andrade‐Navarro
Software Mentions: 6
Published: over 7 years ago

10.1038/s41597-019-0261-9

A 2D hyperspectral library of mineral reflectance, from 900 to 2500 nm
Cited by: 7
Author(s): Laurent Fasnacht, Marie-Louise Vogt, Philippe Renard, Philip Brunner
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pcbi.1007973

XDream: Finding preferred stimuli for visual neurons using generative networks and gradient-free optimization
Cited by: 9
Author(s): Will Xiao, Gabriel Kreiman
Software Mentions: 6
Published: about 6 years ago

10.1111/cns.13701

Establishment of a nomogram with EMP3 for predicting clinical outcomes in patients with glioma: A bi‐center study
Cited by: 5
Author(s): Anke Zhang, Houshi Xu, Zeyu Zhang, Yibo Liu, Xiaying Han, Ling Yuan, Yunjia Ni, Shiqi Gao, Yuanzhi Xu, Sheng Chen, Junkun Jiang, Yike Chen, Xiaotao Zhang, Meiqing Lou, Jianmin Zhang
Software Mentions: 6
Published: almost 5 years ago

10.1186/s40168-019-0705-7

Microbial indicators of environmental perturbations in coral reef ecosystems
Cited by: 109
Author(s): Bettina Glasl, David G. Bourne, Pedro R. Frade, Torsten Thomas, Britta Schaffelke, Nicole S. Webster
Software Mentions: 6
Published: about 7 years ago

10.3390/genes12040549

Clinical Identification of Dysregulated Circulating microRNAs and Their Implication in Drug Response in Triple Negative Breast Cancer (TNBC) by Target Gene Network and Meta-Analysis
Cited by: 15
Author(s): Amal Qattan, Taher Al‐Tweigeri, Wafa Alkhayal, Kausar Suleman, Asma Tulbah, Suad Bin Amer
Software Mentions: 6
Published: about 5 years ago

10.1093/gigascience/giaa116

The Dynamic Proteome of Oligodendrocyte Lineage Differentiation Features Planar Cell Polarity and Macroautophagy Pathways
Cited by: 8
Author(s): Paria Pooyan, Razieh Karamzadeh, Mehdi Mirzaei, Anna Meyfour, Ardeshir Amirkhan, Yunqi Wu, Vivek Gupta, Hossein Baharvand, Mohammad Javan, Ghasem Hosseini Salekdeh
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-020-57474-0

Rejection of the genetic implications of the “Abundant Centre Hypothesis” in marine mussels
Cited by: 18
Author(s): Noxolo N. Ntuli, Katy R. Nicastro, Gerardo I. Zardi, Jorge Assis, Christopher D. McQuaid, Peter R. Teske
Software Mentions: 6
Published: over 6 years ago

10.3390/cancers13051136

Nanopore Sequencing Reveals Global Transcriptome Signatures of Mitochondrial and Ribosomal Gene Expressions in Various Human Cancer Stem-like Cell Populations
Cited by: 13
Author(s): Kaya E. Witte, Oliver Hertel, Beatrice A. Windmöller, Laureen P. Helweg, Anna L. Höving, Cornelius Knabbe, Tobias Busche, Johannes F. W. Greiner, Jörn Kalinowski, Thomas Noll, F. Mertzlufft, Morris Beshay, Jesco Pfitzenmaier, Barbara Kaltschmidt, Christian Kaltschmidt, Constanze Banz‐Jansen, Matthias Simon
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0025630

Leaf Morphology, Taxonomy and Geometric Morphometrics: A Simplified Protocol for Beginners
Cited by: 284
Author(s): Vincenzo Viscosi, Andrea Cardini
Software Mentions: 6
Published: almost 15 years ago

10.1002/ece3.4585

Do replicates of independent guppy lineages evolve similarly in a predator-free laboratory environment?
Cited by: 4
Author(s): Kiyoko M. Gotanda, Amy Pack, Caroline Leblond, Andrew P. Hendry
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0240362

A machine learning approach to the digitalization of bank customers: Evidence from random and causal forests
Cited by: 28
Author(s): Santiago Carbó-Valverde, Pedro J. Cuadros-Solas, Francisco Rodríguez-Fernández
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2020.588778

Labile Dissolved Organic Matter Compound Characteristics Select for Divergence in Marine Bacterial Activity and Transcription
Cited by: 21
Author(s): Benjamin Pontiller, Sandra Martínez‐García, Daniel Lundin, Jarone Pinhassi
Software Mentions: 6
Published: almost 6 years ago

10.1002/ece3.7450

Influence of landscape condition on relative abundance and body condition of two generalist freshwater turtle species
Cited by: 5
Author(s): Joel L. Mota, Donald J. Brown, Danielle M. Canning, Sara M. Crayton, Darien N. Lozon, Alissa L. Gulette, James T. Anderson, Ivana Mali, Brian E. Dickerson, Michael R. J. Forstner, Mark Watson, Thomas K. Pauley
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2021.623799

Comparative Metagenomics Reveals Microbial Signatures of Sugarcane Phyllosphere in Organic Management
Cited by: 11
Author(s): Ahmad Nuruddin Khoiri, Supapon Cheevadhanarak, Jiraporn Jirakkakul, Sudarat Dulsawat, Peerada Prommeenate, Anuwat Tachaleat, Kanthida Kusonmano, Songsak Wattanachaisaereekul, Sawannee Sutheeworapong
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0153355

Immune Profiles to Predict Response to Desensitization Therapy in Highly HLA-Sensitized Kidney Transplant Candidates
Cited by: 20
Author(s): Julie M. Yabu, Janet Siebert, Holden T. Maecker
Software Mentions: 6
Published: about 10 years ago

10.1002/ece3.2787

Re-establishing the pecking order: Niche models reliably predict suitable habitats for the reintroduction of red-billed oxpeckers
Cited by: 11
Author(s): Riddhika Kalle, Leigh Combrink, Tharmalingam Ramesh, Colleen T. Downs
Software Mentions: 6
Published: over 9 years ago

10.1186/s12859-015-0751-5

Comparative study on gene set and pathway topology-based enrichment methods
Cited by: 61
Author(s): Michaela Bayerlová, Klaus Jung, Frank Krämer, Florian Klemm, Annalen Bleckmann, Tim Beißbarth
Software Mentions: 6
Published: over 10 years ago

10.1186/s13029-015-0042-6

PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols
Cited by: 3
Author(s): Alexandros Kanterakis, Joël Kuiper, George Potamias, Morris A. Swertz
Software Mentions: 6
Published: over 10 years ago

10.3389/fmicb.2017.02102

Functionality of Root-Associated Bacteria along a Salt Marsh Primary Succession
Cited by: 17
Author(s): Miao Wang, Erqin Li, Chen Liu, Alexandre Jousset, Joana Falcão Salles
Software Mentions: 6
Published: over 8 years ago

10.1128/AEM.02220-20

Influence of Spatial Scale on Structure of Soil Bacterial Communities across an Arctic Landscape
Cited by: 5
Author(s): Lucie Malard, Muhammad Zohaib Anwar, Carsten Suhr Jacobsen, David A. Pearce
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.5819

Evolution of sexually dimorphic pheromone profiles coincides with increased number of male‐specific chemosensory organs in <i>Drosophila prolongata</i>
Cited by: 12
Author(s): Yige Luo, Yunwei Zhang, Jean‐Pierre Farine, Jean‐François Ferveur, Santiago R. Ramírez, Artyom Kopp
Software Mentions: 6
Published: over 6 years ago

10.1002/1878-0261.12829

Identification of RUNX1T1 as a potential epigenetic modifier in small‐cell lung cancer
Cited by: 10
Author(s): He Tian, Gary Wildey, Karen McColl, Alyssa Savadelis, Kyle B. Spainhower, Cassidy McColl, Adam Kresak, Aik Choon Tan, Michael Yang, Ata Abbas, Afshin Dowlati
Software Mentions: 6
Published: over 5 years ago

10.1038/sdata.2016.95

Systematic chemical-genetic and chemical-chemical interaction datasets for prediction of compound synergism
Cited by: 12
Author(s): Jan Wildenhain, Michaela Spitzer, Sonam Dolma, Nick Jarvik, Robert L. White, Marcia Roy, Emma Griffiths, David S. Bellows, Gerard D. Wright, Mike Tyers
Software Mentions: 6
Published: over 9 years ago

10.1093/jisesa/ieab062

Comparison of Yellow and Blue Sticky Cards for Detection and Monitoring Parasitoid Wasps of the Invasive <i>Halyomorpha halys</i> (Hemiptera: Pentatomidae)
Cited by: 4
Author(s): Mark Cody Holthouse, Lori R. Spears, Diane G. Alston
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13071-021-04615-7

Host–parasite interactions of rodent hosts and ectoparasite communities from different habitats in Germany
Cited by: 8
Author(s): Anna Obiegala, Leonie Arnold, Martin Pfeffer, Michael Kiefer, Daniel Kiefer, Carola Sauter‐Louis, Cornelia Silaghi
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2018.00651

How Does Salinity Shape Bacterial and Fungal Microbiomes of Alnus glutinosa Roots?
Cited by: 53
Author(s): Dominika Thiem, Marcin Gołębiewski, Piotr Hulisz, Agnieszka Piernik, Katarzyna Hrynkiewicz
Software Mentions: 6
Published: about 8 years ago

10.3389/fonc.2021.629633

GMFG Has Potential to Be a Novel Prognostic Marker and Related to Immune Infiltrates in Breast Cancer
Cited by: 5
Author(s): Yan Yang, Xin He, Qianqian Tang, You-Cheng Shao, Wenjing Song, Peng Gong, Yifan Zeng, Shu‐Chun Huang, Jiang-Yao Zhou, Huifang Wan, Lei Wei, Jingwei Zhang
Software Mentions: 6
Published: almost 5 years ago

10.1002/ece3.3109

Flower power: Floral and resource manipulations reveal how and why reproductive trade‐offs occur for lowbush blueberry ( Vaccinium angustifolium )
Cited by: 5
Author(s): Alex W. Bajcz, Francis A. Drummond
Software Mentions: 6
Published: about 9 years ago

10.3390/cancers13081817

USP22 Suppresses SPARC Expression in Acute Colitis and Inflammation-Associated Colorectal Cancer
Cited by: 8
Author(s): Robyn Laura Kosinsky, Dominik Saul, Christoph Ammer‐Herrmenau, William A. Faubion, Albrecht Neeße, Steven A. Johnsen
Software Mentions: 6
Published: about 5 years ago