Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.15252/msb.20167435

https://doi.org/10.15252/msb.20167435

Transcriptional regulatory networks underlying gene expression changes in Huntington's disease

Cited by: 51
Author(s): Seth A. Ament, Jocelynn Pearl, Jeffrey P. Cantle, Robert M. Bragg, Peter J. Skene, Sydney R. Coffey, Dani E Bergey, Vanessa C. Wheeler, Marcy E. MacDonald, Nitin S. Baliga, Jim Rosinski, Leroy Hood, Jeffrey B. Carroll, Nathan D. Price
Published: over 6 years ago

Software Mentions 6

bioconductor: affy
Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233