10.2196/17986

The Impact of Reducing the Number of Wearable Devices on Measuring Gait in Parkinson Disease: Noninterventional Exploratory Study
Cited by: 10
Author(s): Matthew Czech, Charmaine Demanuele, Michael Kelley Erb, Vesper Ramos, Hao Zhang, Bryan Ho, Shyamal Patel
Software Mentions: 6
Published: over 5 years ago

10.1186/s12918-018-0581-y

SCNS: a graphical tool for reconstructing executable regulatory networks from single-cell genomic data
Cited by: 49
Author(s): Steven Woodhouse, Nir Piterman, Christoph M. Wintersteiger, Berthold Göttgens, Jasmin Fisher
Software Mentions: 6
Published: about 8 years ago

10.1038/s41598-021-87365-x

Comparison of Argentinean microbiota with other geographical populations reveals different taxonomic and functional signatures associated with obesity
Cited by: 5
Author(s): Susana Pesoa, Néstor D. Portela, Eduardo Aguilar Fernández, Osvaldo Elbarcha, Martín Gotteland, Fabien Magne
Software Mentions: 6
Published: about 5 years ago

10.3390/genes11101124

Comparative Transcriptomics and Co-Expression Networks Reveal Tissue- and Genotype-Specific Responses of qDTYs to Reproductive-Stage Drought Stress in Rice (Oryza sativa L.)
Cited by: 11
Author(s): Jeshurun Asher Tarun, Ramil Mauleon, Juan David Arbelaez, Sheryl Catausan, Shalabh Dixit, Arvind Kumar, Patrick J. Brown, Ajay Kohli, Tobias Kretzschmar
Software Mentions: 6
Published: almost 6 years ago

10.3390/genes10030231

H3K27me3 Depletion during Differentiation Promotes Myogenic Transcription in Porcine Satellite Cells
Cited by: 12
Author(s): Sheng Wang, Yan Sun, Ruimin Ren, Junhui Xie, Xiaohuan Tian, Shuhong Zhao, Xinyun Li, Jianhua Cao
Software Mentions: 6
Published: over 7 years ago

10.18632/aging.103350

A novel molecular-clinicopathologic nomogram to improve prognosis prediction of hepatocellular carcinoma
Cited by: 3
Author(s): Zhongjing Zhang, Wanqing Weng, Weiguo Huang, Boda Wu, Yi Zhou, Jie Zhang, Tuo Deng, Yan Wen, Jiecheng Zhang, Jian‐Yang Ao, Qiyu Zhang, Ke‐Qing Shi
Software Mentions: 6
Published: about 6 years ago

10.18632/aging.203166

Identification and validation of inferior prognostic genes associated with immune signatures and chemotherapy outcome in acute myeloid leukemia
Cited by: 7
Author(s): Jie Wang, Hao Jian-ping, Nazim Uddin, Yun Wu, Rong Chen, Dongfeng Li, Dai-qin Xiong, Nan Ding, Jianhua Yang, Xiaowen Ding
Software Mentions: 6
Published: about 5 years ago

10.7717/peerj.7141

Comparison of soil bacterial community and functional characteristics following afforestation in the semi-arid areas
Cited by: 27
Author(s): Jiaojiao Deng, Yan Zhang, You Yin, Xu Zhu, Wenxu Zhu, Yongbin Zhou
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pntd.0000436

Cholera Epidemics, War and Disasters around Goma and Lake Kivu: An Eight-Year Survey
Cited by: 72
Author(s): Didier Bompangue, Patrick Giraudoux, Martine Piarroux, Guy Mutombo, Rick Shamavu, Bertrand Súdre, Annie Mutombo, Vital Mondonge, Renaud Piarroux
Software Mentions: 6
Published: about 17 years ago

10.1186/s13007-020-00611-7

DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models
Cited by: 22
Author(s): Ilana Lambert, Christine Paysant‐Le Roux, Stefano Colella, Marie-Laure Martin
Software Mentions: 6
Published: about 6 years ago

10.3389/fgene.2021.674783

Gene Loss, Pseudogenization in Plastomes of Genus Allium (Amaryllidaceae), and Putative Selection for Adaptation to Environmental Conditions
Cited by: 8
Author(s): Victoria A. Scobeyeva, Ilya V. Artyushin, A.A. Krinitsina, Nikitin Pavel, Antipin Mi, Sergei V. Kuptsov, Maxim S. Belenikin, Denis O. Omelchenko, Maria D. Logacheva, Е. А. Коноров, Andrei E. Samoilov, Anna S. Speranskaya
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0231215

Characterization of plant growth-promoting bacteria associated with avocado trees (Persea americana Miller) and their potential use in the biocontrol of Scirtothrips perseae (avocado thrips)
Cited by: 18
Author(s): Jorge A. Tzec-Interián, Damaris Desgarennes, Gloria Carrión, Juan L. Monribot‐Villanueva, José A. Guerrero‐Analco, Ofelia Ferrera-Rodríguez, Dulce Lizbeth Santos-Rodríguez, Nut Liahut-Guin, Gerardo Emmanuel Caballero-Reyes, Randy Ortíz-Castro
Software Mentions: 6
Published: about 6 years ago

10.1007/s00125-019-05032-3

Clinical and genetic correlates of islet-autoimmune signatures in juvenile-onset type 1 diabetes
Cited by: 19
Author(s): Laura A. Claessens, Joris Wesselius, Menno van Lummel, Sandra Laban, Flip Mulder, Dick Mul, Tanja Nikolić, Henk‐Jan Aanstoot, Bobby P. C. Koeleman, Bart O. Roep
Software Mentions: 6
Published: over 6 years ago

10.1186/s12864-018-4980-7

Proteomic and evolutionary analyses of sperm activation identify uncharacterized genes in Caenorhabditis nematodes
Cited by: 3
Author(s): Katja R Kasimatis, Megan Moerdyk-Schauwecker, Nadine Timmermeyer, Patrick C. Phillips
Software Mentions: 6
Published: almost 8 years ago

10.1098/rstb.2018.0337

Ecological indicators of mammal exposure to Ebolavirus
Cited by: 14
Author(s): John P. Schmidt, Sean P. Maher, John M. Drake, Tao Huang, Maxwell J. Farrell, Barbara A. Han
Software Mentions: 6
Published: almost 7 years ago

10.7717/peerj.2452

Canopy position has a profound effect on soybean seed composition
Cited by: 27
Author(s): Steven C. Huber, Kunzhi Li, Randall L. Nelson, Alexander Ulanov, Catherine M. DeMuro, Ivan Baxter
Software Mentions: 6
Published: almost 10 years ago

10.1186/s12859-021-04189-2

A novel miRNA-based classification model of risks and stages for clear cell renal cell carcinoma patients
Cited by: 11
Author(s): Eskezeia Y. Dessie, Jeffrey J. P. Tsai, Jan‐Gowth Chang, Ka-Lok Ng
Software Mentions: 6
Published: about 5 years ago

10.3389/fimmu.2019.02568

Gene Expression-Based Identification of Antigen-Responsive CD8+ T Cells on a Single-Cell Level
Cited by: 22
Author(s): Yannick F. Fuchs, Virag Sharma, Anne Eugster, Gloria Kraus, Robert Morgenstern, Andreas Dahl, Susanne Reinhardt, A. Petzold, Annett Lindner, Doreen Löbel, Ezio Bonifacio
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0158117

Food for Pollinators: Quantifying the Nectar and Pollen Resources of Urban Flower Meadows
Cited by: 208
Author(s): D. M. Hicks, Pierre Ouvrard, Katherine C. R. Baldock, Mathilde Baude, Mark A. Goddard, William E. Kunin, Nadine Mitschunas, Jane Memmott, Helen Morse, Maria Nikolitsi, Lynne M. Osgathorpe, Simon G. Potts, Kirsty M. Robertson, Anna Scott, Frazer Sinclair, Duncan B. Westbury, Graham N. Stone
Software Mentions: 6
Published: about 10 years ago

10.1371/journal.pone.0118732

Dietary Inference from Upper and Lower Molar Morphology in Platyrrhine Primates
Cited by: 36
Author(s): Kari Allen, Siobhán B. Cooke, Lauren A Gonzales, Richard F. Kay
Software Mentions: 6
Published: over 11 years ago

10.26508/lsa.202000974

GATA transcription factors, SOX17 and TFAP2C, drive the human germ-cell specification program
Cited by: 30
Author(s): Yôji Kojima, Chika Yamashiro, Yusuke Murase, Yukihiro Yabuta, Ikuhiro Okamoto, Chizuru Iwatani, Hideaki Tsuchiya, Masataka Nakaya, Tomoyuki Tsukiyama, Tomonori Nakamura, Takuya Yamamoto, Mitinori Saitou
Software Mentions: 6
Published: over 5 years ago

10.3390/ani10091612

Efficacy of Management and Monitoring Methods to Prevent Post-Harvest Losses Caused by Rodents
Cited by: 1
Author(s): Inge Krijger, Gerrit Gort, Steven R. Belmain, P.W.G. Groot Koerkamp, R.B. Shafali, B.G. Meerburg
Software Mentions: 6
Published: almost 6 years ago

10.1186/s13148-015-0097-x

DNA methylation levels are highly correlated between pooled samples and averaged values when analysed using the Infinium HumanMethylation450 BeadChip array
Cited by: 15
Author(s): Cristina Gallego-Fábrega, Caty Carrera, Elena Muiño, Joan Montaner, Jurek Krupinski, Israel Fernández-Cadenas
Software Mentions: 6
Published: almost 11 years ago

10.7554/eLife.35368

Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila
Cited by: 92
Author(s): Zaijun Ma, Hui Wang, Yuping Cai, Han Wang, Kongyan Niu, Xiaofen Wu, Huanhuan Ma, Yun Yang, Wenhua Tong, Feng Liu, Zhandong Liu, Yaoyang Zhang, Rui Li, Zheng‐Jiang Zhu, Nan Liu
Software Mentions: 6
Published: about 8 years ago

10.1002/2211-5463.12327

Multiple-cumulative probabilities used to cluster and visualize transcriptomes
Cited by: 4
Author(s): Xueping Jia, Yisu Liu, Qiuhong Han, Lu Zhang
Software Mentions: 6
Published: over 8 years ago

10.1002/ece3.4679

Responses of macroalgae to CO₂ enrichment cannot be inferred solely from their inorganic carbon uptake strategy
Cited by: 48
Author(s): Luna M. van der Loos, Matthias Schmid, Pablo P. Leal, Christina M. McGraw, Damon Britton, Andrew T. Revill, Patti Virtue, Peter D. Nichols, Catriona L. Hurd
Software Mentions: 6
Published: over 7 years ago

10.3390/cancers13092248

Claudin-Low Breast Cancer Inflammatory Signatures Support Polarization of M1-Like Macrophages with Protumoral Activity
Cited by: 7
Author(s): Mayra C. Suárez-Arriaga, Alfonso Méndez‐Tenorio, Vadim Pérez‐Koldenkova, Ezequiel M. Fuentes‐Pananá
Software Mentions: 6
Published: about 5 years ago

10.1242/dmm.041947

Temporal evolution of the microbiome, immune system, and epigenome with disease progression in ALS mice
Cited by: 44
Author(s): Claudia Figueroa‐Romero, Kai Guo, Benjamin J. Murdock, Ximena Paez-Colasante, Christine M. Bassis, Kristen A. Mikhail, Kristen D. Raue, Matthew C. Evans, Ghislaine F. Taubman, Andrew J. McDermott, Phillipe D. O’Brien, Masha G. Savelieff, Junguk Hur, Eva L. Feldman
Software Mentions: 6
Published: over 7 years ago

10.1242/bio.058222

RNA-Seq reveals changes in human placental metabolism, transport and endocrinology across the first–second trimester transition
Cited by: 15
Author(s): Malwina Prater, Russell S. Hamilton, Hong Wa Yung, Andrew Sharkey, Paul Robson, N. Erlyani Abd Hamid, Eric Jauniaux, D. Stephen Charnock-Jones, Graham J. Burton, Tereza Cindrová‐Davies
Software Mentions: 6
Published: about 5 years ago

10.1002/ece3.5202

Chemical defense of toad tadpoles under risk by four predator species
Cited by: 15
Author(s): Bálint Üveges, Márk Szederkényi, Katharina Mahr, Ágnes M. Móricz, Dániel Krüzselyi, Veronika Bókony, Herbert Hoi, Attila Hettyey
Software Mentions: 6
Published: about 7 years ago

10.1186/s12859-016-1104-8

SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis
Cited by: 75
Author(s): Masaomi Hatakeyama, Lennart Opitz, Giancarlo Russo, Weihong Qi, Ralph Schlapbach, Hubert Rehrauer
Software Mentions: 6
Published: about 10 years ago

10.3389/fnbeh.2020.581296

A Probiotic Mixture Induces Anxiolytic- and Antidepressive-Like Effects in Fischer and Maternally Deprived Long Evans Rats
Cited by: 6
Author(s): Valérie Daugé, Catherine Philippe, Mahendra Mariadassou, Olivier Rué, Jean‐Charles Martin, Marie Rossignol, Nathalie Dourmap, Ljubica Svilar, Franck Tourniaire, Magali Monnoye, Déborah Jardet, Marie Bangratz, Sophie Holowacz, Sylvie Rabot, Laurent Naudon
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0081458

Stability-Based Comparison of Class Discovery Methods for DNA Copy Number Profiles
Cited by: 1
Author(s): Isabel Martínez Brito, Philippe Hupé, Pierre Neuvial, Emmanuel Barillot
Software Mentions: 6
Published: over 12 years ago

10.1186/s12885-021-08617-7

Precision treatment exploration of breast cancer based on heterogeneity analysis of lncRNAs at the single-cell level
Cited by: 3
Author(s): Yan Zhang, Denan Zhang, Qingkang Meng, Ziqi Liu, Hongbo Xie, Lei Liu, Fei Xu, Xiujie Chen
Software Mentions: 6
Published: almost 5 years ago

10.3389/fmolb.2021.644557

Reconstruction and Analysis of the Immune-Related LINC00987/A2M Axis in Lung Adenocarcinoma
Cited by: 8
Author(s): Jiakang Ma, Xinhua Lin, Xueting Wang, Qing-Qing Min, Tonglian Wang, Chaozhi Tang
Software Mentions: 6
Published: about 5 years ago

10.3390/ijms22168482

Multicellular Human Cardiac Organoids Transcriptomically Model Distinct Tissue-Level Features of Adult Myocardium
Cited by: 17
Author(s): Charles M. Kerr, Dylan Richards, Donald R. Menick, Kristine Y. DeLeon‐Pennell, Ying Mei
Software Mentions: 6
Published: almost 5 years ago

10.26508/lsa.202000976

Profiling chromatin accessibility responses in human neutrophils with sensitive pathogen detection
Cited by: 5
Author(s): Nikhil Ram-Mohan, Simone A. Thair, Ulrike M. Litzenburger, Steven Cogill, Nadya Andini, Xi Yang, Howard Y. Chang, Samuel Yang
Software Mentions: 6
Published: about 5 years ago

10.1128/mSystems.00423-19

Network Analysis of the Papaya Orchard Virome from Two Agroecological Regions of Chiapas, Mexico
Cited by: 25
Author(s): Ricardo I. Alcalá-Briseño, Kena Casarrubias-Castillo, Diana López-Ley, Karen A. Garrett, Laura Silva-Rosales
Software Mentions: 6
Published: over 6 years ago

10.3390/genes12081276

Hypomethylation of AHRR (cg05575921) Is Related to Smoking Status in the Mexican Mestizo Population
Cited by: 1
Author(s): Omar Andrés Bravo-Gutiérrez, Ramcés Falfán-Valencia, Alejandra Ramírez‐Venegas, Raúl H Sansores, Rafael de Jesús Hernández-Zenteno, Andrea Hernández-Pérez, Leonor García-Gómez, Jennifer Osio-Echánove, Edgar Abarca-Rojano, Gloría Pérez-Rubio
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13071-020-04386-7

Low temperature tolerance of three Aedes albopictus strains (Diptera: Culicidae) under constant and fluctuating temperature scenarios
Cited by: 14
Author(s): Lisa Tippelt, Doreen Werner, Helge Kampen
Software Mentions: 6
Published: over 5 years ago

10.1172/jci.insight.146242

Comorbid illnesses are associated with altered adaptive immune responses to SARS-CoV-2
Cited by: 36
Author(s): Krystle K. Q. Yu, Stephanie Fischinger, Malisa T. Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D. Layton, Jennifer K. Logue, Melissa S. Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas Franko, Robert Y. Choi, Anna Wald, Dan H. Barouch, David M. Koelle, Douglas A. Lauffenburger, Helen Y. Chu, Galit Alter, Chetan Seshadri
Software Mentions: 6
Published: over 5 years ago

10.1161/CIRCULATIONAHA.119.039596

Widespread Translational Control of Fibrosis in the Human Heart by RNA-Binding Proteins
Cited by: 74
Author(s): Sonia Chothani, Sebastian Schäfer, Eleonora Adami, V. Sivakumar, Anissa A. Widjaja, Sarah R. Langley, Jessie Tan, Mao Wang, Nicholas M Quaife, Chee Jian Pua, G. D’Agostino, Shamini Guna Shekeran, Benjamin L. George, Si Ching Lim, Elaine Yiqun Cao, Sebastiaan van Heesch, Franziska Witte, Leanne E. Felkin, Eleni G. Christodoulou, Jinqiao Dong, Susanne Blachut, Giannino Patone, Paul J.R. Barton, Norbert Hübner, Stuart A. Cook, Owen J. L. Rackham
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41426-018-0204-0

A viral race for primacy: co-infection of a natural pair of low and highly pathogenic H7N7 avian influenza viruses in chickens and embryonated chicken eggs
Cited by: 19
Author(s): Annika Graaf, Reiner Ulrich, Pavlo Maksimov, David Scheibner, Susanne Koethe, Elsayed M. Abdelwhab, Thomas C. Mettenleiter, Martin Beer, Timm Harder
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-018-37512-8

Sheathless CE-MS based metabolic profiling of kidney tissue section samples from a mouse model of Polycystic Kidney Disease
Cited by: 22
Author(s): Elena Sánchez-López, Guinevere S. M. Kammeijer, Antonio L. Crego, Marı́a Luisa Marina, Rawi Ramautar, Dorien J.M. Peters, Oleg A. Mayboroda
Software Mentions: 6
Published: over 7 years ago

10.3390/ijms22115814

Genomic Characterization of Cisplatin Response Uncovers Priming of Cisplatin-Induced Genes in a Resistant Cell Line
Cited by: 7
Author(s): Hadar Golan Berman, Pooja Chauhan, Shira Shalev, Hiba Hassanain, Avital Parnas, Sheera Adar
Software Mentions: 6
Published: about 5 years ago

10.1093/femsec/fiz108

Diversity of tryptophan halogenases in sponges of the genus Aplysina
Cited by: 9
Author(s): Johanna Gutleben, Jasper J. Koehorst, Kyle McPherson, Shirley A. Pomponi, René H. Wijffels, Hauke Smidt, Detmer Sipkema
Software Mentions: 6
Published: about 7 years ago

10.1186/s12915-020-00842-z

Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo
Cited by: 19
Author(s): Jialin Liu, Michael Frochaux, Vincent Gardeux, Bart Deplancke, Marc Robinson‐Rechavi
Software Mentions: 6
Published: almost 6 years ago

10.3389/fonc.2021.617289

Derivation and Validation of a Prognostic Model for Cancer Dependency Genes Based on CRISPR-Cas9 in Gastric Adenocarcinoma
Cited by: 16
Author(s): Wenjie Zhou, Junqing Li, Xiufen Lu, Fangjie Liu, Tailai An, Xing Xiao, Zi Chong Kuo, Wenhui Wu, Yulong He
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0207538

Integrating spatial indicators in the surveillance of exploited marine ecosystems
Cited by: 11
Author(s): Marta M. Rufino, Nicolas Bez, Anik Brind’Amour
Software Mentions: 6
Published: over 7 years ago

10.1186/s12862-021-01880-z

Radiating pain: venom has contributed to the diversification of the largest radiations of vertebrate and invertebrate animals
Cited by: 3
Author(s): Kevin Arbuckle, Richard J. Harris
Software Mentions: 6
Published: almost 5 years ago

10.1007/s40037-018-0438-5

#MedEd: exploring the relationship between altmetrics and traditional measures of dissemination in health professions education
Cited by: 38
Author(s): Lauren A. Maggio, Todd C. Leroux, Holly Meyer, Anthony R. Artino
Software Mentions: 6
Published: about 8 years ago

10.18632/aging.103695

Glioblastoma cell differentiation trajectory predicts the immunotherapy response and overall survival of patients
Cited by: 26
Author(s): Zihao Wang, Xiaopeng Guo, Lu Gao, Yu Wang, Wenbin Ma, Bing Xing
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-021-90735-0

Distinct microbial community along the chronic oil pollution continuum of the Persian Gulf converge with oil spill accidents
Cited by: 16
Author(s): Maryam Rezaei Somee, Seyed Mohammad Mehdi Dastgheib, Mahmoud Shavandi, Leila Ghanbari Maman, Kaveh Kavousi, Mohammad Ali Amoozegar, Maliheh Mehrshad
Software Mentions: 6
Published: about 5 years ago

10.3390/cancers12123551

High-Plex and High-Throughput Digital Spatial Profiling of Non-Small-Cell Lung Cancer (NSCLC)
Cited by: 27
Author(s): James Monkman, Touraj Taheri, Majid Ebrahimi Warkiani, Connor O’Leary, Rahul Ladwa, Derek J. Richard, K.J. O’Byrne, Arutha Kulasinghe
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-020-63039-y

Inter-individual differences in foveal shape in a scavenging raptor, the black kite Milvus migrans
Cited by: 11
Author(s): Simon Potier, Mindaugas Mitkus, Thomas J. Lisney, Pierre‐François Isard, Thomas Dulaurent, Marielle Mentek, Raphaël Cornette, David Schikorski, Almut Kelber
Software Mentions: 6
Published: about 6 years ago

10.3390/genes12040549

Clinical Identification of Dysregulated Circulating microRNAs and Their Implication in Drug Response in Triple Negative Breast Cancer (TNBC) by Target Gene Network and Meta-Analysis
Cited by: 15
Author(s): Amal Qattan, Taher Al‐Tweigeri, Wafa Alkhayal, Kausar Suleman, Asma Tulbah, Suad Bin Amer
Software Mentions: 6
Published: about 5 years ago

10.3390/plants10061149

QTL Mapping and Phenotypic Variation for Seedling Vigour Traits in Barley (Hordeum vulgare L.)
Cited by: 7
Author(s): Ludovic J. A. Capo-chichi, Sharla Eldridge, Ammar Elakhdar, Takahiko Kubo, Robert Brueggeman, Anthony O. Anyia
Software Mentions: 6
Published: about 5 years ago

10.1186/s12983-021-00410-3

Hanging by a thread: unusual nocturnal resting behaviour in a jumping spider
Cited by: 4
Author(s): Daniela C. Rößler, Massimo De Agrò, Elia Biundo, Paul S. Shamble
Software Mentions: 6
Published: about 5 years ago

10.1186/s12920-021-01036-4

Multi-factor regulatory network and different clusters in hypertrophic obstructive cardiomyopathy
Cited by: 3
Author(s): Xianyu Qin, Lei Huang, Sicheng Chen, Shaoxian Chen, Pengju Wen, Yueheng Wu, Jian Zhuang
Software Mentions: 6
Published: almost 5 years ago

10.3389/fonc.2021.592211

An Immune-Related Gene Pairs Signature Predicts Prognosis and Immune Heterogeneity in Glioblastoma
Cited by: 1
Author(s): Nijia Zhang, Ming Ge, Tao Jiang, Xiaoxia Peng, Hailang Sun, Qi Xiang, Zhewei Zou, Dapeng Li
Software Mentions: 6
Published: about 5 years ago

10.3389/fvets.2019.00323

Evaluation of Hair Characteristics and Animal Age on the Impact of Hair Cortisol Concentration in Feedlot Steers
Cited by: 6
Author(s): F. Baier, Temple Grandin, T. E. Engle
Software Mentions: 6
Published: almost 7 years ago

10.1186/s13059-021-02306-1

Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox
Cited by: 101
Author(s): Jakob Wirbel, Konrad Zych, Morgan Essex, Nicolai Karcher, Ece Kartal, Guillem Salazar, Peer Bork, Shinichi Sunagawa, Georg Zeller
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.1971

PKC in motorneurons underlies self-learning, a form of motor learning in<i>Drosophila</i>
Cited by: 13
Author(s): Julien Colomb, Bjoern Brembs
Software Mentions: 6
Published: about 10 years ago

10.1371/journal.pone.0066826

A Comparative Analysis of Transcription Factor Expression during Metazoan Embryonic Development
Cited by: 31
Author(s): Alicia N. Schep, Boris Adryan
Software Mentions: 6
Published: about 13 years ago

10.1371/journal.pone.0243694

Impact of social isolation due to COVID-19 on the seasonality of pediatric respiratory diseases
Cited by: 50
Author(s): Milena Siciliano Nascimento, Diana Milena Baggio, Linus Pauling Fascina, Cristiane do Prado
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0169339

Comparison of bacterial communities from lava cave microbial mats to overlying surface soils from Lava Beds National Monument, USA
Cited by: 51
Author(s): Kathleen H. Lavoie, Ara S. Winter, Kaitlyn J. H. Read, Evan M. Hughes, M. Spilde, Diana E. Northup
Software Mentions: 6
Published: over 9 years ago

10.1186/1471-2105-15-274

A feature selection method for classification within functional genomics experiments based on the proportional overlapping score
Cited by: 38
Author(s): Osama Mahmoud, Andrew Harrison, Aris Perperoglou, Asma Gul, Zardad Khan, Metodi V. Metodiev, Berthold Lausen
Software Mentions: 6
Published: almost 12 years ago

10.1371/journal.pgen.1009027

Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD
Cited by: 5
Author(s): Christian Groß, Chiara Bortoluzzi, Dick de Ridder, Hendrik‐Jan Megens, Martien A. M. Groenen, Marcel J. T. Reinders, Mirte Bosse
Software Mentions: 6
Published: almost 6 years ago

10.3389/fimmu.2017.00246

Host Genetic Background Strongly Affects Pulmonary microRNA Expression before and during Influenza A Virus Infection
Cited by: 19
Author(s): Matthias Preuße, Klaus Schughart, Frank Peßler
Software Mentions: 6
Published: over 9 years ago

10.3389/fonc.2021.665870

Prognostic and Predictive Value of Immune-Related Gene Pair Signature in Primary Lower-Grade Glioma Patients
Cited by: 2
Author(s): Kunjian Lei, Jingying Li, Zewei Tu, Feng Liu, Minhua Ye, Minxian Wu, Yue Zhu, Min Luo, Lin Li, Chuming Tao, Kai Huang, Xingen Zhu
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0254178

Addressing cluster-constant covariates in mixed effects models via likelihood-based boosting techniques
Cited by: 3
Author(s): Colin Griesbach, Andreas Groll, Elisabeth Bergherr
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-019-50864-z

Circular RNA differential expression in blood cell populations and exploration of circRNA deregulation in pediatric acute lymphoblastic leukemia
Cited by: 62
Author(s): Enrico Gaffo, Elena Boldrin, Anna Dal Molin, Silvia Bresolin, Annagiulia Bonizzato, Luca Trentin, Chiara Frasson, Klaus‐Michael Debatin, Lueder Hinrich Meyer, Geertruy te Kronnie, Stefania Bortoluzzi
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-87643-8

Reaction lumping in metabolic networks for application with thermodynamic metabolic flux analysis
Cited by: 1
Author(s): Lea Seep, Zahra Razaghi-Moghadam, Zoran Nikoloski
Software Mentions: 6
Published: about 5 years ago

10.1093/jxb/erab072

Dynamic histone acetylation in floral volatile synthesis and emission in petunia flowers
Cited by: 19
Author(s): Ryan M. Patrick, Xing-Qi Huang, Natalia Dudareva, Ying Liu
Software Mentions: 6
Published: over 5 years ago

10.3389/fmed.2021.681388

A Five-Gene-Based Prognostic Signature for Hepatocellular Carcinoma
Cited by: 7
Author(s): Dean Tian, Yang Yu, Li Zhang, Jiufeng Sun, Wentao Jiang
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0244877

Towards remote monitoring in pediatric care and clinical trials—Tolerability, repeatability and reference values of candidate digital endpoints derived from physical activity, heart rate and sleep in healthy children
Cited by: 10
Author(s): Matthijs D Kruizinga, N van der Heide, A. C. Moll, Ahnjili Zhuparris, Yalçin Yavuz, Marieke L. de Kam, Frederik E. Stuurman, Adam F. Cohen, Gertjan J. Driessen
Software Mentions: 6
Published: over 5 years ago

10.1136/bmjgast-2020-000593

Diarrhoea and preadmission antibiotic exposure in COVID-19: a retrospective cohort study of 1153 hospitalised patients
Cited by: 1
Author(s): Bilal A. Mateen, Sujay Samanta, Sebastian Tullie, Sarah O’Neill, Zillah Cargill, Gillian Kelly, Ewen Brennan, Mehul Patel, Mohammad Al-Agil, James Galloway, James Teo, Debbie L. Shawcross, Alexandra Kent, BuʼHussain Hayee
Software Mentions: 6
Published: almost 5 years ago

10.1007/s00239-021-10012-6

Dynamic Molecular Evolution of Mammalian Homeobox Genes: Duplication, Loss, Divergence and Gene Conversion Sculpt PRD Class Repertoires
Cited by: 8
Author(s): Thomas D. Lewin, Amy H. Royall, Peter W.H. Holland
Software Mentions: 6
Published: about 5 years ago

10.1186/s12872-021-02166-4

Identification of biomarkers associated with metabolic cardiovascular disease using mRNA-SNP-miRNA regulatory network analysis
Cited by: 4
Author(s): Zhiyuan Fan, Wei Peng, Zhiwen Wang, Ling Zhang, Kuo Li
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-021-81506-y

Deep learning predicts postsurgical recurrence of hepatocellular carcinoma from digital histopathologic images
Cited by: 25
Author(s): Rikiya Yamashita, Long Jin, Atif Saleem, Daniel L. Rubin, Jeanne Shen
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0071090

Glocal Clinical Registries: Pacemaker Registry Design and Implementation for Global and Local Integration – Methodology and Case Study
Cited by: 29
Author(s): Kátia Regina da Silva, Roberto Costa, Elizabeth Sartori Crevelari, Marianna Sobral Lacerda, Caio Marcos de Moraes Albertini, Martino Martinelli Filho, José Eduardo Santana, João Ricardo Nickenig Vissoci, Ricardo Pietrobon, Jacson Venâncio de Barros
Software Mentions: 6
Published: almost 13 years ago

10.1186/s13058-020-01350-2

Prognostic value of 18F-FDG PET and PET/CT for assessment of treatment response to neoadjuvant chemotherapy in breast cancer: a systematic review and meta-analysis
Cited by: 19
Author(s): Sangwon Han, Ju Young Choi
Software Mentions: 6
Published: over 5 years ago

10.7554/eLife.59733

Activation of a neural stem cell transcriptional program in parenchymal astrocytes
Cited by: 41
Author(s): Jens P Magnusson, Margherita Zamboni, Giuseppe Santopolo, Jeff E. Mold, Mauricio Barrientos‐Somarribas, Carlos Talavera-López, Björn Andersson, Jonas Frisén
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-020-68879-2

Adaptation of gene loci to heterochromatin in the course of Drosophila evolution is associated with insulator proteins
Cited by: 2
Author(s): S. Yu. Funikov, Alexander P. Rezvykh, Д. А. Куликова, E. S. Zelentsova, Lyudmila A. Protsenko, Lyubov N. Chuvakova, Venera Tyukmaeva, Irina R. Arkhipova, Michael B. Evgen’ev
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0053544

Visualising the Cross-Level Relationships between Pathological and Physiological Processes and Gene Expression: Analyses of Haematological Diseases
Cited by: 13
Author(s): M. Ono, Reiko Tanaka, Manabu Kano, Toshio Sugiman
Software Mentions: 6
Published: over 13 years ago

10.1371/journal.ppat.1006668

Merkel cell polyomavirus recruits MYCL to the EP400 complex to promote oncogenesis
Cited by: 78
Author(s): Jingwei Cheng, Donglim Esther Park, Christian Berrios, Elizabeth White, Reety Arora, Rosa Yoon, Timothy Branigan, Tengfei Xiao, Thomas Westerling, Alexander Federation, Rhamy Zeid, Benjamin J. Strober, Selene K. Swanson, Laurence Florens, James E. Bradner, Myles Brown, Peter M. Howley, Megha Padi, Michael P. Washburn, James A. DeCaprio
Software Mentions: 6
Published: over 8 years ago

10.1186/s13073-017-0511-4

Linking FOXO3, NCOA3, and TCF7L2 to Ras pathway phenotypes through a genome-wide forward genetic screen in human colorectal cancer cells
Cited by: 6
Author(s): Snehangshu Kundu, Muhammad Akhtar-Ali, Niklas Handin, Narendra Padhan, Jimmy Larsson, Maria Karoutsou, Kenneth Ban, Jacek R. Wiśniewski, Per Artursson, Liqun He, Mats Hellström, Tobias Sjöblom
Software Mentions: 6
Published: over 8 years ago

10.3389/frai.2021.644554

Using Twitter Data for the Study of Language Change in Low-Resource Languages. A Panel Study of Relative Pronouns in Frisian
Cited by: 0
Author(s): Jelske Dijkstra, Wilbert Heeringa, Lysbeth Jongbloed-Faber, H. Van de Velde
Software Mentions: 6
Published: about 5 years ago

10.1111/mec.15047

Caste‐ and pesticide‐specific effects of neonicotinoid pesticide exposure on gene expression in bumblebees
Cited by: 53
Author(s): Thomas J. Colgan, Isabel Fletcher, Andres N. Arce, Richard J. Gill, Ana Ramos Rodrigues, Eckart Stolle, Lars Chittka, Yannick Wurm
Software Mentions: 6
Published: over 7 years ago

10.1186/s12885-021-08520-1

Computational analysis for identification of early diagnostic biomarkers and prognostic biomarkers of liver cancer based on GEO and TCGA databases and studies on pathways and biological functions affecting the survival time of liver cancer
Cited by: 21
Author(s): Shuangquan Gao, Jian Gang, Man Yu, Guiliang Xin, Huixin Tan
Software Mentions: 6
Published: almost 5 years ago

10.1186/s40168-021-01087-w

Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches
Cited by: 5
Author(s): Sharon Huws, Joan E. Edwards, Wen Lin, Francesco Rubino, Mark Alston, David Swarbreck, Shabhonam Caim, Pauline Rees Stevens, Justin A. Pachebat, Mi Young Won, Linda Oyama, Christopher J. Creevey, Alison H. Kingston‐Smith
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2021.689855

Wheat Rhizosphere Metagenome Reveals Newfound Potential Soil Zn-Mobilizing Bacteria Contributing to Cultivars’ Variation in Grain Zn Concentration
Cited by: 5
Author(s): Sen Wang, Zikang Guo, Li Wang, Yan Zhang, Fan Jiang, Xingshu Wang, Lei Yin, Bo Liu, Hangwei Liu, Hengchao Wang, Anqi Wang, Yingxue Ren, Conghui Liu, Wei Fan, Zhaohui Wang
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0249832

Non-small cell lung cancer microbiota characterization: Prevalence of enteric and potentially pathogenic bacteria in cancer tissues
Cited by: 14
Author(s): Nathan Dumont-Leblond, Marc Veillette, Christine Racine, Philippe Joubert, Caroline Duchaine
Software Mentions: 6
Published: about 5 years ago

10.1186/s13073-019-0644-8

Clinical utility of custom-designed NGS panel testing in pediatric tumors
Cited by: 77
Author(s): Lea F. Surrey, Suzanne P. MacFarland, Fengqi Chang, Ke Cao, Komal S. Rathi, Gozde Akgumus, Daniel Gallo, Fumin Lin, Adam Gleason, Pichai Raman, Richard Aplenc, Rochelle Bagatell, Jane E. Minturn, Yaël P. Mossé, Mariarita Santi, Sarah K. Tasian, Angela J. Waanders, Mahdi Sarmady, John M. Maris, Stephen P. Hunger, Marilyn M. Li
Software Mentions: 6
Published: about 7 years ago

10.1002/ece3.5627

How do trees respond to species mixing in experimental compared to observational studies?
Cited by: 7
Author(s): Stephan Kambach, Eric Allan, Simon Bilodeau‐Gauthier, David A. Coomes, Joséphine Haase, Tommaso Jucker, Georges Künstler, Sandra Müller, Charles A. Nock, Alain Paquette, Fons van der Plas, Sophia Ratcliffe, Fabian Roger, Paloma Ruiz‐Benito, Michael Scherer‐Lorenzen, Harald Auge, Olivier Bouriaud, Bastien Castagneyrol, Jonas Dahlgren, Lars Gamfeldt, Hervé Jactel, Gerald Kändler, Julia Koricheva, Aleksi Lehtonen, Bart Muys, Quentin Ponette, Nuri Nurlaila Setiawan, Thomas Peer, Kris Verheyen, M. Zavala, Helge Bruelheide
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0181033

Transcriptomic and metabolomic profiles of Chinese citrus fly, Bactrocera minax (Diptera: Tephritidae), along with pupal development provide insight into diapause program
Cited by: 14
Author(s): Jia Wang, Hong-Tao Fan, Ke-Cai Xiong, Ying‐Hong Liu
Software Mentions: 6
Published: almost 9 years ago

10.1186/s12864-021-07443-2

Investigating mechanisms underlying genetic resistance to Salmon Rickettsial Syndrome in Atlantic salmon using RNA sequencing
Cited by: 12
Author(s): Carolina P. Moraleda, Diego Robledo, Alejandro P. Gutiérrez, Jorge Del‐Pozo, José M. Yáñez, Ross D. Houston
Software Mentions: 6
Published: over 5 years ago

10.1002/1878-0261.12965

The ZEB2‐dependent EMT transcriptional programme drives therapy resistance by activating nucleotide excision repair genes <i>ERCC1</i> and <i>ERCC4</i> in colorectal cancer
Cited by: 14
Author(s): Rahul Sreekumar, Hajir AlSaihati, Muhammad Emaduddin, Karwan A. Moutasim, Massimiliano Mellone, Ashish Patel, Seval Kılıç, Metin Çetįn, Sule Erdemir, Marta Salgado Navio, Maria A. Lopez, Nathan Curtis, Tamer Yağcı, John Primrose, Brendan D. Price, Geert Berx, Gareth J. Thomas, Eugene Tulchinsky, Alex H. Mirnezami, Emre Sayan
Software Mentions: 6
Published: about 5 years ago

10.1186/s12944-019-1165-6

Sequence analysis and variant identification at the APOC3 gene locus indicates association of rs5218 with BMI in a sample of Kuwaiti’s
Cited by: 0
Author(s): Zainab H. Malalla, Ahmad Al-Serri, Huda Alaskar, Wafaa Y. Al-Kandari, Suzanne A. Al-Bustan
Software Mentions: 6
Published: over 6 years ago

10.1155/2016/9185496

Lncident: A Tool for Rapid Identification of Long Noncoding RNAs Utilizing Sequence Intrinsic Composition and Open Reading Frame Information
Cited by: 12
Author(s): Siyu Han, Yanchun Liang, Ying Liu, Wei Du
Software Mentions: 6
Published: over 10 years ago