10.1371/journal.pone.0211608
Managing genomic variant calling workflows with Swift/TCited by: 7
Author(s): Azza E. Ahmed, Jacob R Heldenbrand, Yan W. Asmann, Faisal M. Fadlelmola, Daniel S. Katz, Katherine Kendig, Matthew Kendzior, Tiffany Li, Yingxue Ren, Elliott Rodriguez, Matthew Weber, Justin M. Wozniak, Jennie Zermeno, Liudmila Sergeevna Mainzer
Software Mentions: 6
Published: almost 7 years ago
10.1007/s00421-021-04676-7
Individual cardiovascular responsiveness to work-matched exercise within the moderate- and severe-intensity domainsCited by: 17
Author(s): Felipe Mattioni Maturana, Philipp Schellhorn, Gunnar Erz, Christof Burgstahler, Manuel Widmann, Barbara Munz, Rogério N. Soares, Juan M. Murias, Ansgar Thiel, Andreas M. Nieß
Software Mentions: 6
Published: about 5 years ago
10.18632/aging.202638
Identification of key genes in coronary artery disease: an integrative approach based on weighted gene co-expression network analysis and their correlation with immune infiltrationCited by: 10
Author(s): Yang Yang, Xiangshan Xu
Software Mentions: 6
Published: over 5 years ago
10.1098/rstb.2019.0242
Phylogenetic conservation of soil bacterial responses to simulated global changesCited by: 41
Author(s): Kazuo Isobe, Nicholas J. Bouskill, Eoin L. Brodie, Erika A. Sudderth, Jennifer B. H. Martiny
Software Mentions: 6
Published: over 6 years ago
10.1007/s40747-020-00216-6
A novel hand-crafted with deep learning features based fusion model for COVID-19 diagnosis and classification using chest X-ray imagesCited by: 60
Author(s): K. Shankar, Eswaran Perumal
Software Mentions: 6
Published: over 5 years ago
10.1038/s41598-021-98414-w
Integrated genomics point to immune vulnerabilities in pleural mesotheliomaCited by: 7
Author(s): Anca Năstase, Amit Kumar Mandal, Shir Kiong Lu, Hima Anbunathan, Deborah Morris-Rosendahl, Yu Zhi Zhang, Xiaoming Sun, Spyridon Gennatas, Robert C. Rintoul, Matthew Edwards, Alex Bowman, Tatyana Chernova, T. Benepal, Eric Lim, Alison Taylor, Andrew G. Nicholson, Sanjay Popat, Anne E. Willis, Marion MacFarlane, Mark Lathrop, Anne M. Bowcock, Miriam F. Moffatt, William Cookson
Software Mentions: 6
Published: almost 5 years ago
10.34133/2020/1925495
Soybean Root System Architecture Trait Study through Genotypic, Phenotypic, and Shape-Based ClustersCited by: 30
Author(s): Kevin G. Falk, Talukder Z. Jubery, Jamie A. O’Rourke, Arti Singh, Soumik Sarkar, Baskar Ganapathysubramanian
Software Mentions: 6
Published: over 6 years ago
10.1038/s41598-020-69635-2
Rapid fragmentation of microplastics by the freshwater amphipod Gammarus duebeni (Lillj.)Cited by: 91
Author(s): Alicia Mateos-Cárdenas, John O’Halloran, Frank N.A.M. van Pelt, Marcel A. K. Jansen
Software Mentions: 6
Published: almost 6 years ago
10.1186/1471-2105-15-170
Ensemble analyses improve signatures of tumour hypoxia and reveal inter-platform differencesCited by: 24
Author(s): Natalie S. Fox, Maud H.W. Starmans, Syed Haider, Philippe Lambin, Paul C. Boutros
Software Mentions: 6
Published: about 12 years ago
10.1038/s41408-021-00434-2
Polymorphisms in CXCR3 ligands predict early CXCL9 recovery and severe chronic GVHDCited by: 5
Author(s): Hao Dai, Sivaramakrishna P Rachakonda, Olaf Penack, Igor Wolfgang Blau, Olga Blau, Aleksandar Radujkovic, Carsten Müller‐Tidow, Peter Dreger, Rajiv Kumar, Thomas Luft
Software Mentions: 6
Published: over 5 years ago
10.3390/ani11030625
RNA-Seq Implies Divergent Regulation Patterns of LincRNA on Spermatogenesis and Testis Growth in GoatsCited by: 6
Author(s): Dongdong Bo, Xunping Jiang, Guiqiong Liu, Ronggui Hu, Yuqing Chong
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pone.0155477
Risk Factors for Seabird Bycatch in a Pelagic Longline Tuna FisheryCited by: 30
Author(s): Eric Gilman, Milani Chaloupka, John Peschon, Sarah Ellgen
Software Mentions: 6
Published: about 10 years ago
10.3389/fpls.2020.00939
Preferential Disomic Segregation and C. micrantha/C. medica Interspecific Recombination in Tetraploid ‘Giant Key’ Lime; Outlook for Triploid Lime BreedingCited by: 9
Author(s): Dalel Ahmed, Franck Curk, Jean Charles Evrard, Yann Froelicher, Patrick Ollitrault
Software Mentions: 6
Published: about 6 years ago
10.1371/journal.pntd.0009537
Spatio-temporal modelling of the first Chikungunya epidemic in an intra-urban setting: The role of socioeconomic status, environment and temperatureCited by: 10
Author(s): Laís Picinini Freitas, Alexandra M. Schmidt, William Cossich, Oswaldo Gonçalves Cruz, Marília Sá Carvalho
Software Mentions: 6
Published: about 5 years ago
10.7717/peerj.9209
Estimating food resource availability in arid environments with Sentinel 2 satellite imageryCited by: 4
Author(s): Caterina Funghi, René H. J. Heim, Wiebke Schuett, Simon C. Griffith, Jens Oldeland
Software Mentions: 6
Published: about 6 years ago
10.1371/journal.pone.0113838
The Connectome Visualization Utility: Software for Visualization of Human Brain NetworksCited by: 29
Author(s): Roan A. LaPlante, Linda Douw, Wei Tang, Steven M. Stufflebeam
Software Mentions: 6
Published: over 11 years ago
10.1098/rspb.2016.2872
Stable producer–scrounger dynamics in wild birds: sociability and learning speed covary with scrounging behaviourCited by: 28
Author(s): Lucy M. Aplin, Julie Morand‐Ferron
Software Mentions: 6
Published: about 9 years ago
10.1002/ece3.4061
Simple foraging rules in competitive environments can generate socially structured populationsCited by: 32
Author(s): Maurício Cantor, Dan Farine
Software Mentions: 6
Published: about 8 years ago
10.7554/eLife.21887
A phylogenetic transform enhances analysis of compositional microbiota dataCited by: 239
Author(s): Justin D. Silverman, Alex D. Washburne, Sayan Mukherjee, Lawrence A. David
Software Mentions: 6
Published: over 9 years ago
10.3390/microorganisms8071015
Gut Microbiota and Dietary Intake of Normal-Weight and Overweight Filipino ChildrenCited by: 16
Author(s): Maria Julia Golloso-Gubat, Quinten R Ducarmon, Robby Carlo A. Tan, Romy D. Zwittink, Ed J. Kuijper, Jacus S. Nacis, Noelle Lyn C Santos
Software Mentions: 6
Published: almost 6 years ago
10.1038/s41598-021-90538-3
Identification of prognostic biomarkers related to the tumor microenvironment in thyroid carcinomaCited by: 6
Author(s): Junwei Du, Guoquan Li, Yang-sen Li, Xinguang Qiu
Software Mentions: 6
Published: almost 5 years ago
10.1002/ece3.5489
Effects of contemporary agricultural land cover on Colorado potato beetle genetic differentiation in the Columbia Basin and Central SandsCited by: 16
Author(s): Michael S. Crossley, Silvia I. Rondon, Sean D. Schoville
Software Mentions: 6
Published: almost 7 years ago
10.1002/ece3.6978
Implications of genetic heterogeneity for plant translocation during ecological restorationCited by: 2
Author(s): Taylor M. Crow, C. Alex Buerkle, Daniel E. Runcie, Kristina M. Hufford
Software Mentions: 6
Published: over 5 years ago
10.1080/21655979.2020.1840731
Bioinformatics analysis to screen key prognostic genes in the breast cancer tumor microenvironmentCited by: 9
Author(s): Qian Ye, Xiaofei Han, Zhengsheng Wu
Software Mentions: 6
Published: over 6 years ago
10.1111/mec.15047
Caste‐ and pesticide‐specific effects of neonicotinoid pesticide exposure on gene expression in bumblebeesCited by: 53
Author(s): Thomas J. Colgan, Isabel Fletcher, Andres N. Arce, Richard J. Gill, Ana Ramos Rodrigues, Eckart Stolle, Lars Chittka, Yannick Wurm
Software Mentions: 6
Published: over 7 years ago
10.1186/1471-2105-13-76
EpiFire: An open source C++ library and application for contact network epidemiologyCited by: 34
Author(s): Thomas J. Hladish, Eugene Melamud, Luis Barrera, Alison P. Galvani, Lauren Ancel Meyers
Software Mentions: 6
Published: about 14 years ago
10.1107/S0907444909052925
<i>PHENIX</i>: a comprehensive Python-based system for macromolecular structure solutionCited by: 19,578
Author(s): Paul D. Adams, Pavel V. Afonine, G. Bunkóczi, Vincent B. Chen, Ian Davis, Nathaniel Echols, Jeffrey J. Headd, Li Wei Hung, Gary J. Kapral, Ralf W. Grosse‐Kunstleve, Airlie J. McCoy, Nigel W. Moriarty, Robert D. Oeffner, Randy J. Read, David C. Richardson, Jane S. Richardson, Thomas C. Terwilliger, Peter H. Zwart
Software Mentions: 6
Published: over 16 years ago
10.1371/journal.pone.0239673
High-throughput, image-based phenotyping reveals nutrient-dependent growth facilitation in a grass-legume mixtureCited by: 7
Author(s): Kirsten R Ball, Sally A. Power, Chris Brien, Sarah J. Woodin, Nathaniel Jewell, Bettina Berger, Elise Pendall
Software Mentions: 6
Published: over 5 years ago
10.1186/s13073-016-0302-3
An adaptive association test for microbiome dataCited by: 63
Author(s): Chong Wu, Jun Chen, Junghi Kim, Wei Pan
Software Mentions: 6
Published: about 10 years ago
10.1186/s40364-021-00292-x
The REASON score: an epigenetic and clinicopathologic score to predict risk of poor survival in patients with early stage oral squamous cell carcinomaCited by: 13
Author(s): Chi T. Viet, Gary Yu, Kesava Asam, Carissa M. Thomas, Angela J. Yoon, Yan Chen Wongworawat, Mina Haghighiabyaneh, Courtney A. Kilkuts, Caitlyn M. McGue, Marcus Couey, Nicholas Callahan, Coleen Doan, Paul C. Walker, Khanh K. Nguyen, Stephanie C. Kidd, Steve C. Lee, Anupama Grandhi, Allen Cheng, Ashish Patel, Elizabeth Philipone, Olivia L. Ricks, Clint Allen, Bradley E. Aouizerat
Software Mentions: 6
Published: about 5 years ago
10.1186/s41118-017-0018-2
Decomposition of regional convergence in population aging across EuropeCited by: 16
Author(s): Ilya Kashnitsky, Joop de Beer, Leo van Wissen
Software Mentions: 6
Published: about 9 years ago
10.1186/2045-9769-3-1
glbase: a framework for combining, analyzing and displaying heterogeneous genomic and high-throughput sequencing dataCited by: 52
Author(s): Andrew P. Hutchins, Ralf Jauch, Mateusz Dyla, Diego Miranda‐Saavedra
Software Mentions: 6
Published: over 12 years ago
10.1371/journal.pone.0246656
Carbon fixation and rhodopsin systems in microbial mats from hypersaline lakes Brava and Tebenquiche, Salar de Atacama, ChileCited by: 10
Author(s): Daniel Kurth, Darío Elías, María Cecilia Rasuk, Manuel Contreras, Marı́a Eugenia Farı́as
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pone.0075136
Synergistic Re-Activation of Epigenetically Silenced Genes by Combinatorial Inhibition of DNMTs and LSD1 in Cancer CellsCited by: 31
Author(s): Han Han, Xiaojing Yang, Kurinji Pandiyan, Gangning Liang
Software Mentions: 6
Published: almost 13 years ago
10.1186/s12915-019-0731-8
The round goby genome provides insights into mechanisms that may facilitate biological invasionsCited by: 28
Author(s): Irene Adrian‐Kalchhauser, Anders Blomberg, Tomas Larsson, Zuzana Musilová, Claire R. Peart, Martin Pippel, Monica Hongrø Solbakken, Jaanus Suurväli, Jean‐Claude Walser, Joanna Y. Wilson, Magnus Alm Rosenblad, Demián Burguera, Silvia Gutnik, Nico K. Michiels, Mats Töpel, Kirill Pankov, Siegfried Schloissnig, Sylke Winkler
Software Mentions: 6
Published: over 6 years ago
10.1186/s12864-015-1303-0
Genome-wide comparison of PU.1 and Spi-B binding sites in a mouse B lymphoma cell lineCited by: 34
Author(s): Lauren A. Solomon, Stephen K. H. Li, Jan Piskorz, Li Xu, Rodney P. DeKoter
Software Mentions: 6
Published: over 11 years ago
10.3389/fmicb.2018.00381
The Impact of Maltitol-Sweetened Chewing Gum on the Dental Plaque Biofilm Microbiota CompositionCited by: 16
Author(s): Bart J. F. Keijser, Tim J. van den Broek, Dagmar Else Slot, Lodewic van Twillert, Jolanda Kool, Clémentine Thabuis, Michel Ossendrijver, Fridus A. Van der Weijden, R.C. Montijn
Software Mentions: 6
Published: over 8 years ago
10.1186/s12864-018-4738-2
Functional signaling and gene regulatory networks between the oocyte and the surrounding cumulus cellsCited by: 43
Author(s): Fernando H. Biase, Katelyn M. Kimble
Software Mentions: 6
Published: about 8 years ago
10.1002/ece3.5512
Can plant traits predict seed dispersal probability via red deer guts, fur, and hooves?Cited by: 8
Author(s): Tanja K. Petersen, Hans Henrik Bruun
Software Mentions: 6
Published: almost 7 years ago
10.1038/s41398-020-0710-4
Large epigenome-wide association study of childhood ADHD identifies peripheral DNA methylation associated with disease and polygenic risk burdenCited by: 49
Author(s): Michael A. Mooney, Peter Ryabinin, Beth Wilmot, Priya Bhatt, Jonathan Mill, Joel T. Nigg
Software Mentions: 6
Published: over 6 years ago
10.1172/JCI121087
An airway epithelial IL-17A response signature identifies a steroid-unresponsive COPD patient subgroupCited by: 69
Author(s): Stephanie A. Christenson, Maarten van den Berge, Alen Faiz, Kai Inkamp, Nirav R. Bhakta, Luke R. Bonser, Lorna Zlock, Igor Barjaktarević, R. Graham Barr, Eugene R. Bleecker, Richard C. Boucher, Russell P. Bowler, Alejandro P. Comellas, Jeffrey L. Curtis, Mei Lan K. Han, Nadia N. Hansel, Pieter S. Hiemstra, Robert J. Kaner, Jerry A. Krishnanm, Fernando J. Martínez, Wanda K. O’Neal, Robert Paine, Wim Timens, James M. Wells, Avrum Spira, David J. Erle, Prescott G. Woodruff
Software Mentions: 6
Published: over 7 years ago
10.1371/journal.pone.0236878
Modeling cannabinoids from a large-scale sample of Cannabis sativa chemotypesCited by: 12
Author(s): Daniela Vergara, Reggie Gaudino, Thomas Blank, Brian Keegan
Software Mentions: 6
Published: almost 6 years ago
10.1002/cam4.3251
Uridine phosphorylase 1 is a novel immune‐related target and predicts worse survival in brain gliomaCited by: 16
Author(s): Jin Wang, Shi‐Hai Xu, Wen Lv, Fei Shi, Shanshan Mei, Aijun Shan, Jiake Xu, Ying Yang
Software Mentions: 6
Published: about 6 years ago
10.1186/s12874-015-0066-2
Comparison of subset selection methods in linear regression in the context of health-related quality of life and substance abuse in RussiaCited by: 53
Author(s): Olga Morozova, Olga S. Levina, Anneli Uusküla, Robert Heimer
Software Mentions: 6
Published: almost 11 years ago
10.1186/1752-0509-8-47
Fast Bayesian inference for gene regulatory networks using ScanBMACited by: 78
Author(s): William Chad Young, Adrian E. Raftery, Ka Yee Yeung
Software Mentions: 6
Published: about 12 years ago
10.1371/journal.pone.0254829
Tumor infiltrating lymphocytes associated competitive endogenous RNA networks as predictors of outcome in hepatic carcinoma based on WGCNA analysisCited by: 1
Author(s): Ying He, Xu Rui, Li Peng, Xiaoyu Hu
Software Mentions: 6
Published: almost 5 years ago
10.1186/s13059-020-1947-1
Assembly of hundreds of novel bacterial genomes from the chicken caecumCited by: 95
Author(s): Laura Glendinning, Robert D. Stewart, Mark J. Pallen, Kellie Watson, Mick Watson
Software Mentions: 6
Published: over 6 years ago
10.1186/s12870-014-0315-2
The chickpea genomic web resource: visualization and analysis of the desi-type Cicer arietinum nuclear genome for comparative exploration of legumesCited by: 8
Author(s): Gopal Misra, Piyush Priya, Nitesh Bandhiwal, Neha Bareja, Mukesh Jain, Sabhyata Bhatia, Debasis Chattopadhyay, Akhilesh K. Tyagi, Gitanjali Yadav
Software Mentions: 6
Published: over 11 years ago
10.1002/ece3.4724
Highly flexible infection programs in a specialized wheat pathogenCited by: 72
Author(s): Janine Haueisen, Mareike Möller, Christoph Eschenbrenner, Jonathan Grandaubert, Heike Seybold, Holger Adamiak, Eva H. Stukenbrock
Software Mentions: 6
Published: over 7 years ago
10.1002/ece3.4237
Gene flow and Andean uplift shape the diversification of <i>Gasteracantha cancriformis</i> (Araneae: Araneidae) in Northern South AmericaCited by: 19
Author(s): Fabian C. Salgado-Roa, Carolina Pardo‐Díaz, Eloisa Lasso, Carlos F. Arias, Vera Nisaka Solferini, Camilo Salazar
Software Mentions: 6
Published: about 8 years ago
10.1186/s12864-019-6034-1
De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and CambodiaCited by: 19
Author(s): Eugeni Belda, Ferdinand Nanfack-Minkeu, Karin Eiglmeier, Guillaume Carissimo, Inge Holm, Mawlouth Diallo, Diawo Diallo, Amélie Vantaux, Saorin Kim, Igor V. Sharakhov, Kenneth D. Vernick
Software Mentions: 6
Published: almost 7 years ago
10.1371/journal.pone.0053544
Visualising the Cross-Level Relationships between Pathological and Physiological Processes and Gene Expression: Analyses of Haematological DiseasesCited by: 13
Author(s): M. Ono, Reiko Tanaka, Manabu Kano, Toshio Sugiman
Software Mentions: 6
Published: over 13 years ago
10.1371/journal.pone.0230274
Dengue importation into Europe: A network connectivity-based approachCited by: 12
Author(s): Donald Salami, César Capinha, Maria do Rosário Oliveira Martins, Carla A. Sousa
Software Mentions: 6
Published: over 6 years ago
10.1007/s10928-021-09760-1
Pharmacometric estimation methods for aggregate data, including data simulated from other pharmacometric modelsCited by: 1
Author(s): Pyry A. J. Välitalo
Software Mentions: 6
Published: about 5 years ago
10.1111/tpj.14184
An updated gene atlas for maize reveals organ‐specific and stress‐induced genesCited by: 91
Author(s): Genevieve M. Hoopes, John Hamilton, Joshua C. Wood, Eddi Esteban, Asher Pasha, Brieanne Vaillancourt, Nicholas J. Provart, C. Robin Buell
Software Mentions: 6
Published: over 7 years ago
10.1038/s41598-021-90334-z
Evidence toward the potential absence of relationship between temporal and spatial heartbeats perceptionCited by: 2
Author(s): Sophie Betka, Marta Łukowska, Marta Silva, King Joshua, Sarah Garfinkel, Hugo Critch-ley
Software Mentions: 6
Published: about 5 years ago
10.3390/nu11010038
Mapping the Literature on Nutritional Interventions in Cognitive Health: A Data-Driven ApproachCited by: 2
Author(s): Erin Walsh, Nicolas Cherbuin
Software Mentions: 6
Published: over 7 years ago
10.1186/s12864-016-2381-3
Increasing genomic diversity and evidence of constrained lifestyle evolution due to insertion sequences in Aeromonas salmonicidaCited by: 40
Author(s): Antony T. Vincent, Mélanie V. Trudel, Luca Freschi, Vandan Nagar, Cynthia Gagné-Thivierge, Roger C. Levesque, Steve J. Charette
Software Mentions: 6
Published: over 10 years ago
10.1038/s41598-020-73083-3
Evolutionary and ontogenetic changes of the anatomical organization and modularity in the skull of archosaursCited by: 12
Author(s): Hiu Wai Lee, Borja Esteve‐Altava, Arhat Abzhanov
Software Mentions: 6
Published: almost 6 years ago
10.1093/molbev/msab172
Evolutionary and Ecological Drivers Shape the Emergence and Extinction of Foot-and-Mouth Disease Virus LineagesCited by: 12
Author(s): Antonello Di Nardo, Luca Ferretti, Jemma Wadsworth, Valérie Mioulet, Boris Gelman, Sharon Karniely, A. V. Scherbakov, Ghulam Ziay, Fuat Özyörük, Ünal Parlak, Pelin Tuncer‐Göktuna, Reza Hassanzadeh, Mehdi Khalaj, Seyed Mohsen Dastoor, Darab Abdollahi, Ehtisham-ul-Haq Khan, Muhammad Afzal, Manzoor Hussain, Nick J. Knowles, Donald P. King
Software Mentions: 6
Published: about 5 years ago
10.1099/mgen.0.000156
Assembly of highly repetitive genomes using short reads: the genome of discrete typing unit III Trypanosoma cruzi strain 231Cited by: 23
Author(s): Rodrigo P. Baptista, João Luís Reis-Cunha, Jeremy D. DeBarry, Égler Chiari, Jessica C. Kissinger, Daniella Castanheira Bartholomeu, Andréa Mara Macedo
Software Mentions: 6
Published: over 8 years ago
10.1002/ece3.8048
Community species diversity mediates the trade‐off between aboveground and belowground biomass for grasses and forbs in degraded alpine meadow, Tibetan PlateauCited by: 2
Author(s): Tiancai Zhou, Jian Sun, Nan Zong, Guichen Hou, Peili Shi
Software Mentions: 6
Published: almost 5 years ago
10.12688/f1000research.24868.3
Stage 1 Registered Report: Anomalous perception in a Ganzfeld condition - A meta-analysis of more than 40 years investigationCited by: 5
Author(s): Patrizio Tressoldi, Lance Storm
Software Mentions: 6
Published: over 5 years ago
10.3389/fmicb.2020.00954
Persistence of a Core Microbiome Through the Ontogeny of a Multi-Host ParasiteCited by: 22
Author(s): Fátima Jorge, Nolwenn M. Dheilly, Robert Poulin
Software Mentions: 6
Published: about 6 years ago
10.1007/s11060-021-03721-x
LAG-3 expression in the inflammatory microenvironment of gliomaCited by: 19
Author(s): Maximilian J. Mair, Barbara Kiesel, Katharina Feldmann, Georg Widhalm, Karin Dieckmann, Adelheid Wöhrer, Leonhard Müllauer, Matthias Preusser, Anna S. Berghoff
Software Mentions: 6
Published: over 5 years ago
10.1002/ece3.7449
Environmental drivers of Cheirogaleidae population density: Remarkable resilience of Madagascar’s smallest lemurs to habitat degradationCited by: 15
Author(s): Daniel Hending
Software Mentions: 6
Published: about 5 years ago
10.1534/g3.118.200965
Identification of Gene Variants Associated with Melanocyte Stem Cell Differentiation in Mice Predisposed for Hair GrayingCited by: 3
Author(s): Allison Fialkowski, Denise J. Levy, Dawn E. Watkins‐Chow, Joseph W. Palmer, Roshan Darji, Hemant K. Tiwari, William J. Pavan, Melissa L. Harris
Software Mentions: 6
Published: over 7 years ago
10.1186/s12879-017-2351-7
1H-NMR analysis of feces: new possibilities in the helminthes infections researchCited by: 19
Author(s): Sarantos Kostidis, Daria Kokova, Natalia Dementeva, Irina V. Saltykova, Hye Kyong Kim, Young Hae Choi, Oleg A. Mayboroda
Software Mentions: 6
Published: about 9 years ago
10.1186/s12920-020-0668-3
AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care settingCited by: 3
Author(s): Christian Wünsch, Henrik Banck, Carsten Müller‐Tidow, Martin Dugas
Software Mentions: 6
Published: over 6 years ago
10.1038/s42003-020-01439-6
Predicting clinical resistance prevalence using sewage metagenomic dataCited by: 28
Author(s): Antti Karkman, Fanny Berglund, Carl-Fredrik Flach, Erik Kristiansson, D. G. Joakim Larsson
Software Mentions: 6
Published: over 5 years ago
10.3390/diagnostics11040623
Impact of Chronic Prostatitis on the PI-RADS Score 3: Proposal for the Addition of a Novel Binary SuffixCited by: 1
Author(s): Sascha Merat, Theresa Blümlein, Markus Klarhöfer, Dominik Nickel, Gad Singer, Frank G. Zöllner, Stefan O. Schoenberg, Kubik-Huch Ra, Daniel Hausmann, Lukas Hefermehl
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pone.0102717
Selection on Crop-Derived Traits and QTL in Sunflower (Helianthus annuus) Crop-Wild Hybrids under Water StressCited by: 9
Author(s): Birkin R. Owart, Jonathan Corbi, John M. Burke, Jennifer M. Dechaine
Software Mentions: 6
Published: almost 12 years ago
10.1186/s13567-016-0374-5
Identification of epitopes recognised by mucosal CD4+ T-cell populations from cattle experimentally colonised with Escherichia coli O157:H7Cited by: 7
Author(s): Alexander Corbishley, Timothy Connelley, E Wolfson, Keith T. Ballingall, Amy Elizabeth Beckett, David L. Gally, Tom N. McNeilly
Software Mentions: 6
Published: almost 10 years ago
10.1038/s41598-020-80111-9
FAK regulates IL-33 expression by controlling chromatin accessibility at c-Jun motifsCited by: 13
Author(s): Billie G. C. Griffith, Rosanna Upstill-Goddard, Holly Brunton, Graeme R. Grimes, Andrew V. Biankin, Bryan Serrels, Adam Byron, Margaret C. Frame
Software Mentions: 6
Published: over 5 years ago
10.1038/s41598-021-87886-5
Metabolomics and transcriptomics to decipher molecular mechanisms underlying ectomycorrhizal root colonization of an oak treeCited by: 14
Author(s): Mónica Sebastiana, Albert Gargallo‐Garriga, Jordi Sardans, Míriam Pérez‐Trujillo, Filipa Monteiro, Andreia Figueiredo, Marisa Maia, Rui Nascimento, Marta Sousa Silva, António E. N. Ferreira, Carlos Cordeiro, A. Marques, Lisete Sousa, Rui Malhó, Josep Peñuelas
Software Mentions: 6
Published: about 5 years ago
10.1038/s41598-020-74486-y
Personal identifiability of user tracking data during observation of 360-degree VR videoCited by: 65
Author(s): Mark Roman Miller, Fernanda Herrera, Hanseul Jun, James A. Landay, Jeremy N. Bailenson
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pmed.1002984
Incidence of maternal peripartum infection: A systematic review and meta-analysisCited by: 64
Author(s): Susannah Woodd, Ana Montoya, María Barreix, Li Pi, Clara Calvert, Andrea M. Rehman, Doris Chou, Oona M. R. Campbell
Software Mentions: 6
Published: over 6 years ago
10.1186/1471-2164-14-14
Quality assessment and data handling methods for Affymetrix Gene 1.0 ST arrays with variable RNA integrityCited by: 26
Author(s): Katie S Viljoen, Jonathan M. Blackburn
Software Mentions: 6
Published: over 13 years ago
10.7717/peerj.8412
Prognostic analysis of very early onset pancreatic cancer: a population-based analysisCited by: 3
Author(s): Dongjun Dai, Yanmei Wang, Xinyang Hu, Hongchuan Jin, Xian Wang
Software Mentions: 6
Published: over 6 years ago
10.1186/s40594-018-0120-9
Supporting instructional change in mathematics: using social network analysis to understand online support processes following professional development workshopsCited by: 15
Author(s): Charles N. Hayward, Sandra L. Laursen
Software Mentions: 6
Published: about 8 years ago
10.1371/journal.pone.0233645
Freewater estimatoR using iNtErpolated iniTialization (FERNET): Characterizing peritumoral edema using clinically feasible diffusion MRI dataCited by: 24
Author(s): Drew Parker, Abdol Aziz Ould Ismail, Ronald L. Wolf, Steven Brem, Shelton S. Alexander, Wes Hodges, Ofer Pasternak, Emmanuel Caruyer, Ragini Verma
Software Mentions: 6
Published: about 6 years ago
10.2196/21212
Patterns of Routes of Administration and Drug Tampering for Nonmedical Opioid Consumption: Data Mining and Content Analysis of Reddit DiscussionsCited by: 15
Author(s): Duilio Balsamo, Paolo Bajardi, Alberto Salomone, Rossano Schifanella
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pone.0236574
Diversity and structure of prokaryotic communities within organic and conventional farming systems in central highlands of KenyaCited by: 11
Author(s): Edward Nderitu Karanja, Andreas Fließbach, Noah Adamtey, Anne Kelly Kambura, Martha W. Musyoka, Komi K. M. Fiaboe, Romano Mwirichia
Software Mentions: 6
Published: almost 6 years ago
10.1186/s12920-021-01036-4
Multi-factor regulatory network and different clusters in hypertrophic obstructive cardiomyopathyCited by: 3
Author(s): Xianyu Qin, Lei Huang, Sicheng Chen, Shaoxian Chen, Pengju Wen, Yueheng Wu, Jian Zhuang
Software Mentions: 6
Published: almost 5 years ago
10.1007/s00784-020-03613-w
Limited antimicrobial efficacy of oral care antiseptics in microcosm biofilms and phenotypic adaptation of bacteria upon repeated exposureCited by: 22
Author(s): Sophia R. Schwarz, Stefanie Hirsch, Andreas Hiergeist, Christian Kirschneck, Denise Muehler, Karl‐Anton Hiller, Tim Maisch, Ali Al‐Ahmad, André Gessner, Wolfgang Buchalla, Fabian Cieplik
Software Mentions: 6
Published: over 5 years ago
10.3390/plants9121801
The Role of Symbiotic Microorganisms, Nutrient Uptake and Rhizosphere Bacterial Community in Response of Pea (Pisum sativum L.) Genotypes to Elevated Al Concentrations in SoilCited by: 10
Author(s): Andrey A. Belimov, А. И. Шапошников, D. S. Syrova, Arina Kichko, Polina Guro, O. S. Yuzikhin, T. S. Azarova, Anna L Sazanova, E. A. Sekste, Vladimir A Litvinskiy, Vladimir V. Nosikov, А. А. Завалин, E. E. Andronov, Vera I. Safronova
Software Mentions: 6
Published: over 5 years ago
10.3390/brainsci10120931
Efficacy of Low-Level Laser Therapy for Tinnitus: A Systematic Review with Meta-Analysis and Trial Sequential AnalysisCited by: 3
Author(s): Chih‐Hao Chen, Chii-Yuan Huang, Chun-Yu Chang, Yen-Fu Cheng
Software Mentions: 6
Published: over 5 years ago
10.1186/1471-2105-16-S6-S1
Sparse conditional logistic regression for analyzing large-scale matched data from epidemiological studies: a simple algorithmCited by: 16
Author(s): Marta Avalos, Hélène Pouyes, Yves Grandvalet, Ludivine Orriols, Emmanuel Lagarde
Software Mentions: 6
Published: about 11 years ago
10.15252/msb.20209833
Single‐cell transcriptomics reveals immune response of intestinal cell types to viral infectionCited by: 17
Author(s): Sergio Triana, Megan L. Stanifer, Camila Metz-Zumaran, Mohammed Shahraz, Markus Mukenhirn, Carmon Kee, Clara Serger, Ronald Koschny, Diana Ordoñez-Rueda, Malte Paulsen, Vladimı́r Beneš, Steeve Boulant, Theodore Alexandrov
Software Mentions: 6
Published: about 5 years ago
10.1371/journal.pgen.1005465
YAP1 Exerts Its Transcriptional Control via TEAD-Mediated Activation of EnhancersCited by: 272
Author(s): Christoph Stein, Anaïs F. Bardet, Guglielmo Roma, Sebastian Bergling, Ieuan Clay, Alexandra Ruchti, Claudia Agarinis, Tobias Schmelzle, Tewis Bouwmeester, Dirk Schübeler, Andreas Bauer
Software Mentions: 6
Published: almost 11 years ago
10.3390/ani10112009
Genome-Wide Association Studies Reveal Susceptibility Loci for Digital Dermatitis in Holstein CattleCited by: 5
Author(s): Ellen Lai, Alexa L Danner, Thomas R. Famula, Anita M. Oberbauer
Software Mentions: 6
Published: over 5 years ago
10.1016/j.celrep.2019.12.019
Neuroinflammation-Associated Aspecific Manipulation of Mouse Predator Fear by Toxoplasma gondiiCited by: 81
Author(s): Madlaina Boillat, Pierre‐Mehdi Hammoudi, Sunil Kumar Dogga, Stéphane Pagès, Maged Goubran, Iván Rodríguez, Dominique Soldati‐Favre
Software Mentions: 6
Published: over 6 years ago
10.1186/s13059-014-0459-2
Genome analysis of a major urban malaria vector mosquito, Anopheles stephensiCited by: 106
Author(s): Xiaofang Jiang, Ashley Peery, Andrew Brantley Hall, Atashi Sharma, Xiaoguang Chen, Robert M. Waterhouse, Aleksey Komissarov, Michelle M. Riehle, Yogesh S. Shouche, Maria V. Sharakhova, Daniel Lawson, Nazzy Pakpour, Peter Arensburger, Victoria L M Davidson, Karin Eiglmeier, Scott J. Emrich, Phillip George, Ryan Kennedy, Shrinivasrao P. Mane, G. Maslen, Chioma Oringanje, Yumin Qi, Robert E. Settlage, Marta Tojo, José M. C. Tubío, Maria Unger, Bo Wang, Kenneth D. Vernick, José M. C. Ribeiro, Anthony A. James, Kristin Michel, Michael A. Riehle, Shirley Luckhart, Igor V. Sharakhov, Zhijian Tu
Software Mentions: 6
Published: almost 12 years ago
10.1371/journal.pgen.1009801
Tramtrack acts during late pupal development to direct ant caste identityCited by: 6
Author(s): Karl M. Glastad, Linyang Ju, Shelley L. Berger
Software Mentions: 6
Published: almost 5 years ago
10.1371/journal.pone.0238067
Spatio-temporal prediction model of out-of-hospital cardiac arrest: Designation of medical priorities and estimation of human resources requirementCited by: 4
Author(s): Angelo Auricchio, Stefano Peluso, Maria Luce Caputo, Jost Reinhold, Claudio Benvenuti, Roman Burkart, Roberto Cianella, Catherine Klersy, Enrico Baldi, Antonietta Mira
Software Mentions: 6
Published: almost 6 years ago
10.1002/ece3.3093
Factors contributing to the accumulation of reproductive isolation: A mixed model approachCited by: 13
Author(s): Dean M. Castillo
Software Mentions: 6
Published: about 9 years ago
10.1186/s13071-020-04386-7
Low temperature tolerance of three Aedes albopictus strains (Diptera: Culicidae) under constant and fluctuating temperature scenariosCited by: 14
Author(s): Lisa Tippelt, Doreen Werner, Helge Kampen
Software Mentions: 6
Published: over 5 years ago
10.1155/2021/6680883
MXRA5 Is a Novel Immune-Related Biomarker That Predicts Poor Prognosis in GliomaCited by: 8
Author(s): Jinzhang Sun, Jinhao Zhang, Jia-Bo Li, Feng Yuan, Luqing Tong, Xu-Ya Wang, Lulu Chen, Xiaoguang Fan, Yiming Zhang, Xiao Ren, Chen Zhang, Shukun Yu, Xuejun Yang
Software Mentions: 6
Published: about 5 years ago
10.1186/s12859-019-3309-0
shinyBN: an online application for interactive Bayesian network inference and visualizationCited by: 10
Author(s): Jia-Jin Jason Chen, Ruyang Zhang, Xuesi Dong, Lijuan Lin, Ying Zhu, Jieyu He, David C. Christiani, Yongyue Wei, Feng Chen
Software Mentions: 6
Published: over 6 years ago
10.1038/s41598-017-15695-w
Objective quantification of nanoscale protein distributionsCited by: 15
Author(s): Miklos Szoboszlay, Tekla Kirizs, Zoltán Nusser
Software Mentions: 6
Published: over 8 years ago