Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0191154

https://doi.org/10.1371/journal.pone.0191154

A critical comparison of topology-based pathway analysis methods

Cited by: 51
Author(s): Ivana Ihnatová, Vlad Popovici, Eva Budínská
Published: almost 7 years ago

Software Mentions 6

bioconductor: DEGraph
Two-sample tests on a graph
Papers that mentioned: 15
bioconductor: graphite
GRAPH Interaction from pathway Topological Environment
Papers that mentioned: 30
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
cran: CePa
Centrality-Based Pathway Enrichment
Papers that mentioned: 22
pypi: graphite
Papers that mentioned: 30
pypi: MSPT
MS Bias calculations using the Pascal Triangle
Papers that mentioned: 3