Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13073-016-0382-0

https://doi.org/10.1186/s13073-016-0382-0

Non-coding single nucleotide variants affecting estrogen receptor binding and activity

Cited by: 5
Author(s): Amir Bahreini, Kevin M. Levine, Lucas Santana-Santos, Panayiotis V. Benos, Peilu Wang, Courtney Andersen, Steffi Oesterreich, Adrian V. Lee
Published: almost 8 years ago

Software Mentions 6

bioconductor: BCRANK
Predicting binding site consensus from ranked DNA sequences
Papers that mentioned: 6
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
pypi: custom
Custom self carry
Papers that mentioned: 1,363
pypi: is

Papers that mentioned: 4
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: scripts
Various shell scripts
Papers that mentioned: 315