10.1038/srep40914
Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimesCited by: 69
Author(s): Franziska Wemheuer, Kristin Kaiser, Petr Karlovský, Rolf Daniel, Stefan Vidal, Bernd Wemheuer
Software Mentions: 7
Published: over 9 years ago
10.7717/peerj.1393
First description of underwater acoustic diversity in three temperate pondsCited by: 44
Author(s): Camille Desjonquères, Fanny Rybak, Marion Depraetere, Amandine Gasc, Isabelle Le Viol, Sandrine Pavoine, Jérôme Sueur
Software Mentions: 7
Published: over 10 years ago
10.1093/g3journal/jkaa036
Visualizing population structure with variational autoencodersCited by: 44
Author(s): C. J. Battey, Gabrielle C. Coffing, Andrew D. Kern
Software Mentions: 7
Published: over 5 years ago
10.3390/pharmacy9010027
Sentiment Analysis of Online Reviews for Selective Serotonin Reuptake Inhibitors and Serotonin–Norepinephrine Reuptake InhibitorsCited by: 3
Author(s): Chad T. Compagner, Corey A. Lester, Michael P. Dorsch
Software Mentions: 7
Published: over 5 years ago
10.1002/humu.23772
eDiVA—Classification and prioritization of pathogenic variants for clinical diagnosticsCited by: 15
Author(s): Mattia Bosio, Oliver Drechsel, Rubayte Rahman, Francesc Muyas, Raquel Rabionet, Daniela Bezdan, Laura Domènech, Hyun‐Gyu Hor, Jean‐Jacques Schott, Francina Munell, Roger Colobran, Alfons Macaya, Xavier Estivill, Stephan Ossowski
Software Mentions: 7
Published: about 7 years ago
10.3389/fonc.2020.622251
Screening and Identification of Four Prognostic Genes Related to Immune Infiltration and G-Protein Coupled Receptors Pathway in Lung AdenocarcinomaCited by: 3
Author(s): Yan Wang, Longqing Qiu, Yu Chen, Xia Zhang, Yang Peng, Feng Xu
Software Mentions: 7
Published: over 5 years ago
10.1371/journal.pone.0200729
The murine female intestinal microbiota does not shift throughout the estrous cycleCited by: 18
Author(s): Jessica G. Wallace, Ryan Potts, Jake C. Szamosi, Michael G. Surette, Deborah M. Sloboda
Software Mentions: 7
Published: almost 8 years ago
10.1007/s00248-019-01426-3
Fusarium Head Blight Modifies Fungal Endophytic Communities During Infection of Wheat SpikesCited by: 45
Author(s): Edward C. Rojas, Rumakanta Sapkota, Birgit Jensen, Henning Jørgensen, Tina Henriksson, Lise Nistrup Jørgensen, Mogens Nicolaisen, David B. Collinge
Software Mentions: 7
Published: almost 7 years ago
10.1002/cam4.3434
The clinical value and potential molecular mechanism of the downregulation of MAOA in hepatocellular carcinoma tissuesCited by: 20
Author(s): Yu‐Yan Pang, Jian‐Di Li, Gao Li, Xia Yang, Yi‐Wu Dang, Zhiyong Lai, Li‐Min Liu, Jie Yang, Huayu Wu, Rong‐Quan He, Zhi‐Guang Huang, Dandan Xiong, Lihua Yang, Lin Shi, Wei‐Jia Mo, Deng Tang, Huiping Lu, Gang Chen
Software Mentions: 7
Published: almost 6 years ago
10.1371/journal.pone.0243672
Characterisation and chemometric evaluation of 17 elements in ten seaweed species from GreenlandCited by: 11
Author(s): Katharina Kreissig, Lisbeth Truelstrup Hansen, Pernille Erland Jensen, Susse Wegeberg, Ole Geertz‐Hansen, Jens Jørgen Sloth
Software Mentions: 7
Published: over 5 years ago
10.3390/vaccines7030113
TIV Vaccination Modulates Host Responses to Influenza Virus Infection that Correlate with Protection against Bacterial SuperinfectionCited by: 5
Author(s): Angela Choi, Ioanna Christopoulou, Xavier Saelens, Adolfo Garcı́a-Sastre, Michael Schotsaert
Software Mentions: 7
Published: almost 7 years ago
10.3390/ijerph18168514
Younger Age in Adolescent Pregnancies Is Associated with Higher Risk of Adverse OutcomesCited by: 6
Author(s): María de la Calle, José Luis Bartha, Cristina M. López, M Turiel, N. Arias Martínez, Silvia M. Arribas, David Ramiro-Cortijo
Software Mentions: 7
Published: almost 5 years ago
10.1371/journal.pcbi.1007654
ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS dataCited by: 28
Author(s): Lisa Bramer, A. M. White, Kelly G. Stratton, Allison Thompson, Daniel Claborne, Kirsten Hofmockel, Lee Ann McCue
Software Mentions: 7
Published: over 6 years ago
10.7554/eLife.62800
Mapping immune variation and var gene switching in naive hosts infected with Plasmodium falciparumCited by: 18
Author(s): Kathryn H. Milne, Alasdair Ivens, Adam J. Reid, Magda E. Lotkowska, Áine O’Toole, Geetha Sankaranarayanan, Diana Muñoz Sandoval, Wiebke Nahrendorf, Clément Regnault, Nick J. Edwards, Sarah E. Silk, Ruth Payne, Angela M. Minassian, Navin Venkatraman, Mandy Sanders, Adrian V. S. Hill, Michael P. Barrett, Matthew Berriman, Simon J. Draper, J. Alexandra Rowe, Philip J. Spence
Software Mentions: 7
Published: over 5 years ago
10.1371/journal.pone.0199648
Outcomes of early NIH-funded investigators: Experience of the National Institute of Allergy and Infectious DiseasesCited by: 10
Author(s): Patricia A. Haggerty, Matthew J. Fenton
Software Mentions: 7
Published: almost 8 years ago
10.1186/s12967-016-0906-9
Centrosome associated genes pattern for risk sub-stratification in multiple myelomaCited by: 13
Author(s): Fedor Kryukov, Pavel Němec, Lenka Radová, Elena V. Kryukova, Samuel Adeyinka Okubote, Jiří Minařík, Zdena Štefániková, Luděk Pour, Roman Hájek
Software Mentions: 7
Published: about 10 years ago
10.3389/fphar.2021.688528
Explore the Usefulness of Concurrent Chemotherapy in Stage II Nasopharyngeal Carcinoma: A Retrospective StudyCited by: 3
Author(s): Peijing Li, YuLin Lai, Fang He, Yuan-Yuan Chen, Zhuo‐Sheng Gu, Wei Luo, Qun Zhang
Software Mentions: 7
Published: almost 5 years ago
10.3389/fgene.2021.635863
Identification and Validation of a Novel DNA Damage and DNA Repair Related Genes Based Signature for Colon Cancer PrognosisCited by: 16
Author(s): Xuequan Wang, Shiwen Xu, Wei Wang, Shang Guo Piao, Xin-Li Mao, Xian-Bin Zhou, Yi Wang, Weidan Wu, Liping Ye, Shaowei Li
Software Mentions: 7
Published: over 5 years ago
10.3389/fvets.2020.00214
Cultural “Blind Spots,” Social Influence and the Welfare of Working Donkeys in Brick Kilns in Northern IndiaCited by: 16
Author(s): Tamlin Watson, Laura M Kubasiewicz, Natasha Chamberlain, Caroline Nye, Zoe Raw, Faith Burden
Software Mentions: 7
Published: about 6 years ago
10.1186/s13072-021-00415-6
Identification of tissue-specific and common methylation quantitative trait loci in healthy individuals using MAGARCited by: 1
Author(s): Michael Scherer, Gilles Gasparoni, Souad Rahmouni, Tatiana I. Shashkova, Marion Arnoux, Édouard Louis, Arina Nostaeva, Diana Avalos, Emmanouil T. Dermitzakis, Yurii S. Aulchenko, Thomas Lengauer, Paul Lyons, Michel Georges, Jörn Walter
Software Mentions: 7
Published: almost 5 years ago
10.1098/rsif.2018.0084
Understanding the ontogeny of foraging behaviour: insights from combining marine predator bio-logging with satellite-derived oceanography in hidden Markov modelsCited by: 72
Author(s): W. James Grecian, Jude V. Lane, Théo Michelot, Helen M. Wade, Keith C. Hamer
Software Mentions: 7
Published: about 8 years ago
10.1186/s13059-021-02321-2
Identification of X-chromosomal genes that drive sex differences in embryonic stem cells through a hierarchical CRISPR screening approachCited by: 23
Author(s): Oriana Genolet, Anna A. Monaco, Ilona Dunkel, Michael Boettcher, Edda G. Schulz
Software Mentions: 7
Published: about 5 years ago
10.3389/fvets.2020.580523
The Influence of Predictability and Controllability on Stress Responses to the Aversive Component of a Virtual FenceCited by: 16
Author(s): Tellisa Kearton, Danila Marini, Frances Cowley, Sue Belson, Hamideh Keshavarzi, Bonnie T. Mayes, Lee C
Software Mentions: 7
Published: over 5 years ago
10.3389/fvets.2018.00269
The Use of Kernel Density Estimation With a Bio-Physical Model Provides a Method to Quantify Connectivity Among Salmon Farms: Spatial Planning and Management With Epidemiological RelevanceCited by: 27
Author(s): Danielle L. Cantrell, Erin E. Rees, Raphaël Vanderstichel, Jon E. Grant, Ramón Filgueira, Crawford W. Revie
Software Mentions: 7
Published: over 7 years ago
10.1002/gepi.22205
Imputed gene associations identify replicable <i>trans</i>‐acting genes enriched in transcription pathways and complex traitsCited by: 13
Author(s): Heather E. Wheeler, Sally Ploch, Alvaro N. Barbeira, Rodrigo Bonazzola, Angela Andaleon, Alireza Fotuhi Siahpirani, Ashis Saha, Alexis Battle, Sushmita Roy, Hae Kyung Im
Software Mentions: 7
Published: about 7 years ago
10.3389/fpsyg.2020.599094
Co-occurrence Patterns of Character Strengths and Measured Core Virtues in German-Speaking AdultsCited by: 6
Author(s): Willibald Ruch, Sonja Heintz, Lisa Wagner
Software Mentions: 7
Published: over 5 years ago
10.1038/s41598-020-67324-8
Venom alkaloids against Chagas disease parasite: search for effective therapiesCited by: 10
Author(s): Rafael Cardoso Maciel Costa Silva, Eduardo Gonçalves Paterson Fox, Fabio M. Gomes, Daniel F. Feijó, Isabela Ramos, Carolina M. Koeller, Tatiana F. R. Costa, Nathalia S. Rodrigues, Ana Paula Lima, Geórgia C. Atella, Kildare Miranda, Alejandra Cecilia Schoijet, Guillermo D. Alonso, Ednildo A. Machado, Norton Heise
Software Mentions: 7
Published: about 6 years ago
10.1093/bfgp/elx018
Epigenetic regulation of gene expression in cancer: techniques, resources and analysisCited by: 91
Author(s): Luciane T. Kagohara, Genevieve Stein-O’Brien, Dylan Z. Kelley, Emily Flam, Heather C. Wick, Ludmila Danilova, Hariharan Easwaran, Alexander V. Favorov, Jiang Qian, Daria A. Gaykalova, Elana J. Fertig
Software Mentions: 7
Published: almost 9 years ago
10.3389/fmolb.2021.656204
Understanding the Holobiont: Crosstalk Between Gut Microbiota and Mitochondria During Long Exercise in HorseCited by: 12
Author(s): Núria Mach, Marco Moroldo, Andrea Rau, Jérôme Lecardonnel, Laurence Le Moyec, Céline Robert, Éric Barrey
Software Mentions: 7
Published: about 5 years ago
10.3390/cancers13163929
Maturation State-Specific Alternative Splicing in FLT3-ITD and NPM1 Mutated AMLCited by: 4
Author(s): Anna Wojtuszkiewicz, Inge van der Werf, Stephan Hütter, Wencke Walter, Constance Baer, Wolfgang Kern, Jeroen Janssen, Gert J. Ossenkoppele, Claudia Haferlach, Jacqueline Cloos, Torsten Haferlach
Software Mentions: 7
Published: almost 5 years ago
10.1186/s12864-015-1270-5
Expression and regulation of long noncoding RNAs in TLR4 signaling in mouse macrophagesCited by: 43
Author(s): Aiping Mao, Jun Shen, Zhixiang Zuo
Software Mentions: 7
Published: over 11 years ago
10.1371/journal.pone.0222822
Range of motion and between-measurement variation of spinal kinematics in sound horses at trot on the straight line and on the lungeCited by: 8
Author(s): A. M. Hardeman, Anna Byström, L. Roepstorff, J. H. Swagemakers, P. R. van Weeren, F. M. Serra Bragança
Software Mentions: 7
Published: over 6 years ago
10.3390/microorganisms8101528
Metabolic Response of Faecalibacterium prausnitzii to Cell-Free Supernatants from Lactic Acid BacteriaCited by: 14
Author(s): Mathilde Lebas, Peggy Garault, Daniel Carrillo, Francisco M. Codoñer, Muriel Derrien
Software Mentions: 7
Published: over 5 years ago
10.7554/eLife.59654
HNRNPM controls circRNA biogenesis and splicing fidelity to sustain cancer cell fitnessCited by: 19
Author(s): Jessica Sy Ho, Federico Di Tullio, Megan Schwarz, Diana Low, Danny Incarnato, Tommaso Tabaglio, Jingxian Zhang, Heike Wollmann, Leilei Chen, Ömer An, Tim Chan, Alexander Hall Hickman, Simin Zheng, Vladimir Roudko, Sujun Chen, Alcida Karz, Musaddeque Ahmed, Housheng Hansen He, Benjamin Greenbaum, Salvatore Oliviero, Michela Serresi, Gaetano Gargiulo, Karen Mann, Eva Hernando, David J. Mulholland, Ivan Marazzi, Dave Keng Boon Wee, Ernesto Guccione
Software Mentions: 7
Published: about 5 years ago
10.1007/s10841-021-00327-6
Consistent oviposition preferences of the Duke of Burgundy butterfly over 14 years on a chalk grassland reserve in Bedfordshire, UKCited by: 0
Author(s): Matthew Hayes, Esme Ashe‐Jepson, GE Hitchcock, Richard Knock, Cbh Lucas, Andrew J. Bladon, Edgar C. Turner
Software Mentions: 7
Published: about 5 years ago
10.1111/eva.12188
Contrasting patterns of genetic and phenotypic differentiation in two invasive salmonids in the southern hemisphereCited by: 16
Author(s): Catalina Monzón‐Argüello, Sofía Consuegra, Gonzalo Gajardo, Francisco Marco‐Rius, Daniel M. Fowler, Jacquelin DeFaveri, Carlos García de Leániz
Software Mentions: 7
Published: almost 12 years ago
10.1186/1471-2164-15-452
Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella sheddingCited by: 52
Author(s): Arun Kommadath, Hua Bao, Adriano S. Arantes, Graham Plastow, Christopher K. Tuggle, Shawn M. D. Bearson, Le Luo Guan, Paul Stothard
Software Mentions: 7
Published: about 12 years ago
10.2196/15554
Longitudinal Study of the Variation in Patient Turnover and Patient-to-Nurse Ratio: Descriptive Analysis of a Swiss University HospitalCited by: 11
Author(s): Sarah N. Musy, Olga Endrich, Alexander Benedikt Leichtle, Peter Griffiths, Christos T. Nakas, Michaël Simon
Software Mentions: 7
Published: about 6 years ago
10.7717/peerj.1621
Cross-platform normalization of microarray and RNA-seq data for machine learning applicationsCited by: 71
Author(s): Jeffrey Thompson, Jie Tan, Casey S. Greene
Software Mentions: 7
Published: over 10 years ago
10.1038/s41598-019-51685-w
The Evolutionary Radiation of Hominids: a Phylogenetic Comparative StudyCited by: 3
Author(s): Guido Rocatti, S. Iván Pérez
Software Mentions: 7
Published: over 6 years ago
10.3389/fmicb.2020.577474
Dietary Emulsifiers Alter Composition and Activity of the Human Gut Microbiota in vitro, Irrespective of Chemical or Natural Emulsifier OriginCited by: 25
Author(s): Lisa Miclotte, Kim De Paepe, Leen Rymenans, Chris Callewaert, Jeroen Raes, Andreja Rajković, John Van Camp, Tom Van de Wiele
Software Mentions: 7
Published: over 5 years ago
10.3390/s21082852
Classification of Skin Disease Using Deep Learning Neural Networks with MobileNet V2 and LSTMCited by: 294
Author(s): Parvathaneni Naga Srinivasu, Jalluri Gnana SivaSai, Muhammad Fazal Ijaz, Akash Kumar Bhoi, Wonjoon Kim, James Jin Kang
Software Mentions: 7
Published: about 5 years ago
10.1371/journal.pbio.1001555
The Geography of Recent Genetic Ancestry across EuropeCited by: 318
Author(s): Peter L. Ralph, Graham Coop
Software Mentions: 7
Published: about 13 years ago
10.3390/md18080379
Laminariales Host Does Impact Lipid Temperature Trajectories of the Fungal Endophyte Paradendryphiella salina (Sutherland.)Cited by: 2
Author(s): Marine Vallet, Tarik Méziane, Najet Thiney, Soizic Prado, Cédric Hubas
Software Mentions: 7
Published: almost 6 years ago
10.1371/journal.pone.0126545
Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray ComparabilityCited by: 15
Author(s): Karolis Uziela, Antti Honkela
Software Mentions: 7
Published: about 11 years ago
10.18632/aging.101912
The widespread increase in inter-individual variability of gene expression in the human brain with ageCited by: 19
Author(s): Veronika R. Kedlian, Handan Melike Dönertaş, Janet M. Thornton
Software Mentions: 7
Published: about 7 years ago
10.1038/s41598-019-54532-0
Variations in terrestrial arthropod DNA metabarcoding methods recovers robust beta diversity but variable richness and site indicatorsCited by: 19
Author(s): Teresita M. Porter, Dave M. Morris, Nathan Basiliko, Mehrdad Hajibabaei, Daniel Doucet, Susan Bowman, Erik J. S. Emilson, Caroline E. Emilson, Derek Chartrand, Kerrie L. Wainio-Keizer, Armand Séguin, Lisa Venier
Software Mentions: 7
Published: over 6 years ago
10.1371/journal.pcbi.1009302
Crowdsourced identification of multi-target kinase inhibitors for RET- and TAU- based disease: The Multi-Targeting Drug DREAM ChallengeCited by: 5
Author(s): Zhitao Xiong, Minji Jeon, Robert J. Allaway, Jaewoo Kang, Donghyeon Park, Jinhyuk Lee, Hwisang Jeon, Miyoung Ko, Hualiang Jiang, Mingyue Zheng, Aik Choon Tan, Xindi Guo, Multi-Targeting Drug Dream Challenge Community, Kristen K. Dang, Alex Tropsha, Chana Hecht, Tirtha K. Das, Heather A. Carlson, Ruben Abagyan, Justin Guinney, Avner Schlessinger, Ross L. Cagan
Software Mentions: 7
Published: almost 5 years ago
10.1111/jcmm.16321
Characterization of an endoplasmic reticulum stress‐related signature to evaluate immune features and predict prognosis in gliomaCited by: 29
Author(s): Qing Zhang, Gefei Guan, Cheng Peng, Wen Cheng, Lianhe Yang, Anhua Wu
Software Mentions: 7
Published: over 5 years ago
10.1111/acel.13344
Senescence‐associated β‐galactosidase reveals the abundance of senescent CD8+ T cells in aging humansCited by: 62
Author(s): Ricardo Iván Martínez-Zamudio, Hannah K Dewald, Themistoklis Vasilopoulos, Lisa Gittens-Williams, Patricia Fitzgerald-Bocarsly, Utz Herbig
Software Mentions: 7
Published: about 5 years ago
10.1186/s13059-020-02156-3
STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cellsCited by: 42
Author(s): Tianran Peng, Yanan Zhai, Yaser Atlasi, Menno ter Huurne, Hendrik Marks, Hendrik G. Stunnenberg, Wout Megchelenbrink
Software Mentions: 7
Published: almost 6 years ago
10.3389/fimmu.2021.645320
Effects of Hypoxia in Intestinal Tumors on Immune Cell Behavior in the Tumor MicroenvironmentCited by: 14
Author(s): Luping Zhang, Shaokun Wang, Yachen Wang, Wenjie Zhao, Yingli Zhang, Nan Zhang, Hong Xu
Software Mentions: 7
Published: over 5 years ago
10.7554/eLife.56689
Genome streamlining in a minute herbivore that manipulates its host plantCited by: 30
Author(s): Robert Greenhalgh, Wannes Dermauw, Joris J. Glas, Stéphane Rombauts, Nicky Wybouw, Jainy Thomas, Juan M. Alba, Ellen J. Pritham, Saioa Legarrea, René Feyereisen, Yves Van de Peer, Thomas Van Leeuwen, Richard M. Clark, Merijn R. Kant
Software Mentions: 7
Published: over 5 years ago
10.7150/ijms.47224
Construction and Validation of a Protein Prognostic Model for Lung Squamous Cell CarcinomaCited by: 5
Author(s): Xisheng Fang, Xia Liu, Chengyin Weng, Yong Wu, Baoxiu Li, Haibo Mao, Mingyu Guan, Lin Lü, Guolong Liu
Software Mentions: 7
Published: over 6 years ago
10.1186/s12864-016-2816-x
EventPointer: an effective identification of alternative splicing events using junction arraysCited by: 28
Author(s): Juan Pablo Romero, Ander Muniategui, Fernando J. de Miguel, Ander Aramburu, Luis M. Montuenga, Rubén Pı́o, Ángel Rubio
Software Mentions: 7
Published: about 10 years ago
10.1371/journal.pone.0097678
Evaluation of Toxicogenomics Approaches for Assessing the Risk of Nongenotoxic Carcinogenicity in Rat LiverCited by: 16
Author(s): Johannes Eichner, Clemens Wrzodek, Michael Roemer, Heidrun Ellinger‐Ziegelbauer, Andreas Zell
Software Mentions: 7
Published: about 12 years ago
10.1038/s41375-020-0791-3
Validation of nomogram-revised risk index and comparison with other models for extranodal nasal-type NK/T-cell lymphoma in the modern chemotherapy era: indication for prognostication and clinical decision-makingCited by: 66
Author(s): Si Ye Chen, Yong Yang, S. Qi, Ying Wang, Chen Hu, Xia He, L. Zhang, Gang Wu, Baolin Qu, Qian Li, Xuwei Hou, Fu Quan Zhang, X.Y. Qiao, Hua Wang, Gao Feng Li, Yu Jing Zhang, Yuan Zhu, Jian Cao, Sheng Hui Lan, Jun Wu, Tao Wu, Shijun Zhu, Mei Shi, Li Xu, Zhi Yong Yuan, Joachim Yahalom, Richard W. Tsang, Yinggai Song, Jun Zhu, Hang Su, Ye Xiong Li
Software Mentions: 7
Published: over 6 years ago
10.1111/pce.13520
Floral plasticity: Herbivore‐species‐specific‐induced changes in flower traits with contrasting effects on pollinator visitationCited by: 48
Author(s): Quint Rusman, Erik H. Poelman, Farzana Nowrin, G. Polder, Dani Lucas‐Barbosa
Software Mentions: 7
Published: over 7 years ago
10.1038/s41597-019-0207-2
Compendiums of cancer transcriptomes for machine learning applicationsCited by: 13
Author(s): Su Bin Lim, Swee Jin Tan, Wan-Teck Lim, Chwee Teck Lim
Software Mentions: 7
Published: over 6 years ago
10.1155/2019/8418760
Integrative Deep Learning for Identifying Differentially Expressed (DE) BiomarkersCited by: 8
Author(s): Jayeon Lim, SoYoun Bang, Jiyeon Kim, Cheolyong Park, JunSang Cho, Sunghwan Kim
Software Mentions: 7
Published: over 6 years ago
10.5334/jors.319
CMakeCatchTemplate: A C++ template projectCited by: 1
Author(s): Thomas Dowrick, Mian Ahmed, Stephen A. Thompson, James Hetherington, Jonathan Cooper, Matthew J. Clarkson
Software Mentions: 7
Published: over 5 years ago
10.1038/s41598-020-71805-1
Northstar enables automatic classification of known and novel cell types from tumor samplesCited by: 8
Author(s): Fabio Zanini, Bojk A. Berghuis, Robert C. Jones, Benedetta Nicolis di Robilant, Rachel Yuan Nong, Jeffrey A. Norton, Michael F. Clarke, Stephen R. Quake
Software Mentions: 7
Published: almost 6 years ago
10.1038/s41598-018-23584-z
Antidepressant drug-specific prediction of depression treatment outcomes from genetic and clinical variablesCited by: 48
Author(s): Raquel Iniesta, Karen Hodgson, Daniel Ståhl, Karim Malki, Wolfgang Maier, Marcella Rietschel, Ole Mors, Joanna Hauser, Neven Henigsberg, Mojca Zvezdana Dernovšek, Daniel Souery, Richard Dobson, Katherine J. Aitchison, Anne Farmer, Peter McGuffin, Cathryn M. Lewis, Rudolf Uher
Software Mentions: 7
Published: about 8 years ago
10.1186/s12864-019-5924-6
A catalog of CasX genome editing sites in common model organismsCited by: 4
Author(s): Elisha D.O. Roberson
Software Mentions: 7
Published: about 7 years ago
10.3390/insects11050278
Thermal Tolerance of Fruit-Feeding Butterflies (Lepidoptera: Nymphalidae) in Contrasting Mountaintop EnvironmentsCited by: 9
Author(s): Vanessa Diniz e Silva, Marina do Vale Beirão, Danon Clemes Cardoso
Software Mentions: 7
Published: about 6 years ago
10.1098/rsos.200139
Behavioural inference from signal processing using animal-borne multi-sensor loggers: a novel solution to extend the knowledge of sea turtle ecologyCited by: 23
Author(s): Lorène Jeantet, Víctor Planas‐Bielsa, Simon Benhamou, Sébastien Geiger, Jordan Martin, Flora Siegwalt, Pierre Lelong, Julie Gresser, Denis Etienne, Gaëlle Hiélard, Alexandre Arqué, Sidney Régis, Nicolas Lecerf, Cédric Frouin, Abdelwahab Benhalilou, Céline Murgale, Thomas Maillet, Lucas Andreani, Guilhem Campistron, Hélène Delvaux, Christelle Guyon, Sabine Richard, Fabien Lefèbvre, Nathalie Aubert, Caroline Habold, Yvon Le Maho, Damien Chevallier
Software Mentions: 7
Published: about 6 years ago
10.1038/s41419-021-04067-y
Single cell transcriptomics reveal trans-differentiation of pancreatic beta cells following inactivation of the TFIID subunit Taf4Cited by: 6
Author(s): Thomas Kleiber, Guillaume Davidson, Gabrielle Mengus, Igor Martianov, Irwin Davidson
Software Mentions: 7
Published: almost 5 years ago
10.4056/sigs.3377516
Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.Cited by: 8
Author(s): Kristen M. DeAngelis, Patrik D’haeseleer, Dylan Chivian, Blake A. Simmons, Adam P. Arkin, Konstantinos Mavromatis, Stephanie Malfatti, Susannah G. Tringe, Terry C. Hazen
Software Mentions: 7
Published: over 13 years ago
10.3390/plants8070224
Phenotypic and Genetic Variation of an Interspecific Centaurium Hybrid (Gentianaceae) and Its Parental SpeciesCited by: 4
Author(s): Tijana Banjanac, Sanja Đurović, Mihailo Jelić, Milan Dragićević, Danijela Mišić, Marijana Škorić, Jelena Živković, Branislav Šiler
Software Mentions: 7
Published: almost 7 years ago
10.3389/fmicb.2020.628755
Horizontal Transmission of the Heritable Protective Endosymbiont Hamiltonella defensa Depends on Titre and HaplotypeCited by: 11
Author(s): Heidi Kaech, Christoph Vorburger
Software Mentions: 7
Published: over 5 years ago
10.1186/s40813-021-00219-w
Using nontargeted LC-MS metabolomics to identify the Association of Biomarkers in pig feces with feed efficiencyCited by: 10
Author(s): Jie Wu, Yong Ye, Jianping Quan, Rongrong Ding, Xingwang Wang, Zhanwei Zhuang, Shenping Zhou, Qian Geng, Cineng Xu, Linjun Hong, Zheng Xu, Enqin Zheng, Guangyan Cai, Zhenfang Wu, Jie Yang
Software Mentions: 7
Published: about 5 years ago
10.1002/ece3.5025
Spatiotemporal variability in the structure of seagrass meadows and associated macrofaunal assemblages in southwest England (UK): Using citizen science to benchmark ecological patternCited by: 7
Author(s): Dan A. Smale, Graham Epstein, Mark Parry, Martin J. Attrill
Software Mentions: 7
Published: over 7 years ago
10.1186/s13059-021-02437-5
SCAPTURE: a deep learning-embedded pipeline that captures polyadenylation information from 3′ tag-based RNA-seq of single cellsCited by: 11
Author(s): Guo-Wei Li, Nan Fang, Guo-Hua Yuan, Chu-Xiao Liu, Xindong Liu, Lingling Chen, Bin Tian, Li Yang
Software Mentions: 7
Published: almost 5 years ago
10.3390/cancers13184710
Virtual Monoenergetic Images of Dual-Energy CT—Impact on Repeatability, Reproducibility, and Classification in RadiomicsCited by: 10
Author(s): André Euler, Fabian Christopher Laqua, D. Cester, Niklas Lohaus, Thomas Sartoretti, Daniel Pinto dos Santos, Hatem Alkadhi, Bettina Baeßler
Software Mentions: 7
Published: almost 5 years ago
10.3389/fmicb.2021.660719
Changes in the Community Structure of Under-Ice and Open-Water Microbiomes in Urban Lakes Exposed to Road SaltsCited by: 14
Author(s): Isabelle B. Fournier, Connie Lovejoy, Warwick F. Vincent
Software Mentions: 7
Published: over 5 years ago
10.1007/s00406-019-01078-x
The network structure of schizotypy in the general populationCited by: 12
Author(s): Bertalan Polner, Eliana Faiola, María Fernanda Urquijo, Inga Meyhöfer, Maria Steffens, Levente Rónai, Nikolaos Koutsouleris, Ulrich Ettinger
Software Mentions: 7
Published: over 6 years ago
10.1016/j.diabres.2019.01.008
Differential methylation of the type 2 diabetes susceptibility locus KCNQ1 is associated with insulin sensitivity and is predicted by CpG site specific genetic variationCited by: 14
Author(s): Ushma Jaykamal Shah, Wenting Xie, Allan Flyvbjerg, John J. Nolan, Kurt Højlund, Mark Walker, Caroline L Relton, Hannah R Elliott
Software Mentions: 7
Published: over 7 years ago
10.1098/rsos.160471
Maternal effects and <i>Symbiodinium</i> community composition drive differential patterns in juvenile survival in the coral <i>Acropora tenuis</i>Cited by: 55
Author(s): Kate M. Quigley, Bette L. Willis, Line K. Bay
Software Mentions: 7
Published: over 9 years ago
10.3389/fimmu.2021.568729
Evolution and Expression of the Immune System of a Facultatively Anadromous SalmonidCited by: 7
Author(s): Thomas J. Colgan, Peter Moran, Louise C. Archer, Robert Wynne, Stephen A. Hutton, Philip McGinnity, Thomas E. Reed
Software Mentions: 7
Published: over 5 years ago
10.3390/nu13072471
Use of Different Food Classification Systems to Assess the Association between Ultra-Processed Food Consumption and Cardiometabolic Health in an Elderly Population with Metabolic Syndrome (PREDIMED-Plus Cohort)Cited by: 38
Author(s): Celia Martinez-Perez, Rodrigo San-Cristóbal, Pilar Guallar-Castillón, Miguel Ángel Martínez‐González, Jordi Salas‐Salvadó, Dolores Corella, Olga Castañer, José Alfredo Martínez Hernández, Ángel M. Alonso‐Gómez, Julia Wärnberǵ, Jesús Vioque, Dora Romaguera, José López‐Miranda, Ramón Estruch, Francisco J. Tinahones, José Lapetra, Lluís Serra-Majem, Aurora Bueno‐Cavanillas, Josep A. Tur, Vicente Martín, Xavier Pintó Sala, José J. Gaforio, Pilar Matía, Josep Vidal, Clotilde Vázquez, Emilio Ros, Maira Bes–Rastrollo, Nancy Babió, José V. Sorlí, Camille Lassale, Beatriz Pérez-Sanz, Jessica Vaquero-Luna, María Julia Ajejas Bazán, María Concepción Barceló-Iglesias, Jadwiga Konieczna, Antonio García Ríos, María Rosa Bernal-López, José Manuel Santos‐Lozano, Estefanía Toledo, Nerea Becerra‐Tomás, Olga Portolés, María Dolores Zomeño, Itziar Abete, Anai Moreno-Rodríguez, Oscar Lecea-Juarez, Stephanie K. Nishi, Júlia Muñoz-Martínez, José M. Ordovás, Lidia Daimiel
Software Mentions: 7
Published: almost 5 years ago
10.1107/S2059798320003769
Development of basic building blocks for cryo-EM: the emcore and emvis software librariesCited by: 0
Author(s): J.M. de la Rosa-Trevín, Pedro Alberto Hernández Viga, Joaquı́n Otón, Erik Lindahl
Software Mentions: 7
Published: over 6 years ago
10.1155/2018/4879850
A Retrospective Cohort Study on Rehospitalization following Expanded Criteria Donor Kidney TransplantationCited by: 1
Author(s): Colin P Dunn, Emmanuel U. Emeasoba, Michael Hung, Ari J. Holtzman, Eran Bellin, Stuart Greenstein
Software Mentions: 7
Published: over 7 years ago
10.1186/s12859-019-3099-4
DIRECT: RNA contact predictions by integrating structural patternsCited by: 14
Author(s): Yiren Jian, Xiaonan Wang, Jaidi Qiu, Huiwen Wang, Zhichao Liu, Yunjie Zhao, Chen Zeng
Software Mentions: 7
Published: over 6 years ago
10.1136/jitc-2021-002467
Tumor microenvironment evaluation promotes precise checkpoint immunotherapy of advanced gastric cancerCited by: 75
Author(s): Dongqiang Zeng, Jiani Wu, Hongyu Luo, Yong Li, Jian Xiao, Jianjun Peng, Zilan Ye, Rui Zhou, Yunfang Yu, Gaofeng Wang, Na Huang, Jianhua Wu, Xiaoxiang Rong, Li Sun, Huiying Sun, Wenjun Qiu, Yuting Xue, Jianping Bin, Yulin Liao, Li N, Min Shi, Kyoung‐Mee Kim, Wangjun Liao
Software Mentions: 7
Published: almost 5 years ago
10.1186/1471-2105-16-S5-S10
Using epigenomics data to predict gene expression in lung cancerCited by: 40
Author(s): Jeffery Li, Travers Ching, Sijia Huang, Lana X. Garmire
Software Mentions: 7
Published: over 11 years ago
10.1007/s10549-019-05135-w
A high-risk luminal A dominant breast cancer subtype with increased mobilityCited by: 21
Author(s): Liping Guo, Guoji Chen, Wen Zhang, Lülin Zhou, Ting Xiao, Di Xia, Yipeng Wang, Feng Li, Kaitai Zhang
Software Mentions: 7
Published: over 7 years ago
10.3390/jfmk5040072
Body Composition Changes over Multiple Academic Years in Female Collegiate Soccer PlayersCited by: 0
Author(s): Austin Katona, Caroline Riewe, Angela Bruzina, Nicholas J. Ollberding, Mary Ankrom, Jon G. Divine, Robert E. Mangine, Abigail Peairs
Software Mentions: 7
Published: almost 6 years ago
10.1016/j.ebiom.2021.103390
AI-guided discovery of the invariant host response to viral pandemicsCited by: 31
Author(s): Debashis Sahoo, Gajanan D. Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo, Courtney Tindle, MacKenzie Fuller, Sahar Taheri, Thomas F. Rogers, Nathan Beutler, Sydney I. Ramirez, Stephen A. Rawlings, Victor Pretorius, Davey M Smith, Dennis R. Burton, Laura E. Crotty Alexander, Jason Duran, Shane Crotty, Jennifer M. Dan, Soumita Das, Pradipta Ghosh
Software Mentions: 7
Published: about 5 years ago
10.1186/s12864-017-3662-1
Evolutionary acquisition of promoter-associated non-coding RNA (pancRNA) repertoires diversifies species-dependent gene activation mechanisms in mammalsCited by: 18
Author(s): Masahiro Uesaka, Kiyokazu Agata, Takao Oishi, Kinichi Nakashima, Takuya Imamura
Software Mentions: 7
Published: about 9 years ago
10.3389/fninf.2019.00059
PyParadigm—A Python Library to Build Screens in a Declarative WayCited by: 1
Author(s): Felix G. Knorr, Johannes Petzold, Michael Marxen
Software Mentions: 7
Published: almost 7 years ago
10.1186/s12862-016-0728-7
Evolution of the locomotory system in eels (Teleostei: Elopomorpha)Cited by: 7
Author(s): Cathrin Pfaff, Roberto Zorzin, Jürgen Kriwet
Software Mentions: 7
Published: almost 10 years ago
10.3389/fimmu.2021.694680
Gene Set Enrichment Analysis Reveals Individual Variability in Host Responses in Tuberculosis PatientsCited by: 5
Author(s): Teresa Domaszewska, Joanna Żyła, Raik Otto, Stefan H. E. Kaufmann, January Weiner
Software Mentions: 7
Published: almost 5 years ago
10.1186/s40168-021-01044-7
Characterization of the public transit air microbiome and resistome reveals geographical specificityCited by: 20
Author(s): Marcus H. Y. Leung, Xinzhao Tong, Kari Oline Bøifot, Daniela Bezdan, Daniel Butler, David Danko, Jostein Gohli, D. C. Green, Mark Hernandez, Frank J. Kelly, Shawn Levy, Gabriella Mason-Buck, Marina Nieto-Caballero, Denise Syndercombe‐Court, Klas I. Udekwu, Brian P. Young, Christopher E. Mason, Marius Dybwad, P. K. H. Lee
Software Mentions: 7
Published: about 5 years ago
10.1371/journal.pgen.1002704
Extent, Causes, and Consequences of Small RNA Expression Variation in Human Adipose TissueCited by: 45
Author(s): Leopold Parts, Åsa K. Hedman, Sarah Keildson, Andrew Knights, Cei Abreu‐Goodger, Martijn van de Bunt, José Afonso Guerra-Assunção, Nenad Bartoniček, Stijn van Dongen, Reedik Mägi, James Nisbet, Amy Barrett, Mattias Rantalainen, Alexandra C. Nica, Michael A. Quail, Kerrin S. Small, Daniel Glass, Anton J. Enright, John Winn, Panos Deloukas, Emmanouil T. Dermitzakis, Mark I. McCarthy, Timothy D. Spector, Richard Durbin, Cecilia M. Lindgren
Software Mentions: 7
Published: about 14 years ago
10.3389/fninf.2019.00014
Visbrain: A Multi-Purpose GPU-Accelerated Open-Source Suite for Multimodal Brain Data VisualizationCited by: 44
Author(s): Etienne Combrisson, Raphaël Vallat, Christian O’Reilly, Mainak Jas, Annalisa Pascarella, Anne-Lise Saive, Thomas Thiery, David Meunier, Dmitrii Altukhov, Tarek Lajnef, Perrine Ruby, Aymeric Guillot, Karim Jerbi
Software Mentions: 7
Published: over 7 years ago
10.1093/bioinformatics/btz698
scds: computational annotation of doublets in single-cell RNA sequencing dataCited by: 114
Author(s): Abha Bais, Dennis Kostka
Software Mentions: 7
Published: almost 7 years ago
10.7554/eLife.53360
Dual histone methyl reader ZCWPW1 facilitates repair of meiotic double strand breaks in male miceCited by: 25
Author(s): Mohamed Mahgoub, Jacob Paiano, Melania Bruno, Wei Wu, Sarath Pathuri, Xing Zhang, Sherry Ralls, Xiaodong Cheng, André Nussenzweig, Todd S. Macfarlan
Software Mentions: 7
Published: about 6 years ago
10.3389/fpsyg.2017.01849
Discrete- vs. Continuous-Time Modeling of Unequally Spaced Experience Sampling Method DataCited by: 65
Author(s): Silvia de Haan-Rietdijk, Manuel C. Voelkle, Loes Keijsers, Ellen L. Hamaker
Software Mentions: 7
Published: over 8 years ago
10.7554/eLife.60176
Chloroplast acquisition without the gene transfer in kleptoplastic sea slugs, Plakobranchus ocellatusCited by: 21
Author(s): Taro Maeda, Shunichi Takahashi, Takao Yoshida, Shigeru Shimamura, Yoshihiro Takaki, Yukiko Nagai, Atsushi Toyoda, Yutaka Suzuki, Asuka Arimoto, Hisaki Ishii, Nori Satoh, Tomoaki Nishiyama, Mitsuyasu Hasebe, Tadashi Maruyama, Jun Minagawa, Junichi Obokata, Shuji Shigenobu
Software Mentions: 7
Published: about 5 years ago
10.7717/peerj.1366
Taking account of uncertainties in digital land suitability assessmentCited by: 14
Author(s): Brendan Malone, Darren Kidd, Budiman Minasny, Alex B. McBratney
Software Mentions: 7
Published: over 10 years ago