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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.26508/lsa.202101080

https://doi.org/10.26508/lsa.202101080

Glucocorticoid signaling induces transcriptional memory and universally reversible chromatin changes

Cited by: 9
Author(s): Melissa Bothe, René Buschow, Sebastiaan H. Meijsing
Published: almost 4 years ago

Software Mentions 7

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
Very Likely Science (83)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
Very Likely Science (90)
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
Very Likely Science (75)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
Very Likely Science (90)
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
Very Likely Science (100)