10.1523/ENEURO.0207-21.2021

Refining the Identity and Role of Kv4 Channels in Mouse Substantia Nigra Dopaminergic Neurons
Cited by: 8
Author(s): Alexis Haddjeri-Hopkins, Mónica Tapia, Jorge Ramírez‐Franco, Fabien Tell, Béatrice Marquèze-Pouey, Marianne Amalric, Jean-Marc Goaillard
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pcbi.1000589

A Quick Guide for Developing Effective Bioinformatics Programming Skills
Cited by: 45
Author(s): Joel T. Dudley, Atul J. Butte
Software Mentions: 7
Published: over 16 years ago

10.1002/mc.23147

Loss of myeloid‐specific lamin A/C drives lung metastasis through Gfi‐1 and C/EBPε‐mediated granulocytic differentiation
Cited by: 3
Author(s): Hiroki Ishii, Woo‐Yong Park, Jae-Young So, Skyler Kuhn, Vishal N. Kopardé, Yanli Pang, Tim F. Greten, M. Christine Hollander, Li Yang
Software Mentions: 7
Published: over 6 years ago

10.1038/s41419-021-04015-w

Autophagy-related circRNA evaluation reveals hsa_circ_0001747 as a potential favorable prognostic factor for biochemical recurrence in patients with prostate cancer
Cited by: 16
Author(s): Chuanfan Zhong, Kuan-Hung Wu, Shuo Wang, Zining Long, Taowei Yang, Weibo Zhong, Xiao Tan, Zixian Wang, Chuanyin Li, Jianming Lü, Xiangming Mao
Software Mentions: 7
Published: almost 5 years ago

10.1111/mec.14860

Host‐derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin
Cited by: 43
Author(s): Robert Hooper, Jaelle C. Brealey, Tom van der Valk, Antton Alberdi, John W. Durban, Holly Fearnbach, Kelly M. Robertson, Robin W. Baird, M. Bradley Hanson, Paul R. Wade, M. Thomas P. Gilbert, Phillip A. Morin, Jochen B. W. Wolf, Andrew D. Foote, Katerina Guschanski
Software Mentions: 7
Published: over 7 years ago

10.1186/s13321-019-0342-y

KMR: knowledge-oriented medicine representation learning for drug–drug interaction and similarity computation
Cited by: 16
Author(s): Ying Shen, Kun Yuan, Min Yang, Buzhou Tang, Yaliang Li, Nan Du, Kai Lei
Software Mentions: 7
Published: over 7 years ago

10.3390/ani11030674

Assessment of Performance and Some Welfare Indicators of Cows in Vietnamese Smallholder Dairy Farms
Cited by: 5
Author(s): Nguyen N. Bang, Nguyen V. Chanh, Nguyễn Xuân Trạch, Duong Nguyen Khang, Ben J. Hayes, J. B. Gaughan, Russell E. Lyons, Nguyễn Thanh Hải, David McNeill
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0239381

Short k-mer abundance profiles yield robust machine learning features and accurate classifiers for RNA viruses
Cited by: 8
Author(s): Nafis Ul Alam, Umar Faruq Chowdhury
Software Mentions: 7
Published: almost 6 years ago

10.4178/epih.e2019007

Diagnostic test accuracy: application and practice using R software
Cited by: 63
Author(s): Sung Ryul Shim, Seong-Jang Kim, Jong Hoo Lee
Software Mentions: 7
Published: over 7 years ago

10.1021/acsomega.1c00991

Global Property Prediction: A Benchmark Study on Open-Source, Perovskite-like Datasets
Cited by: 5
Author(s): Felix Mayr, Alessio Gagliardi
Software Mentions: 7
Published: about 5 years ago

10.3389/fmed.2021.598382

Non-invasive Diagnostic Tests in Cystic Fibrosis-Related Liver Disease: A Diagnostic Test Accuracy Network Meta-Analysis
Cited by: 2
Author(s): Ágnes Rita Martonosi, Alexandra Soós, Zoltán Rumbus, Péter Hegyi, V. Izsák, Piroska Pázmány, Marcell Imrei, Szilárd Váncsa, Zsolt Szakács, Andrea Párniczky
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12864-021-07593-3

Dense time-course gene expression profiling of the Drosophila melanogaster innate immune response
Cited by: 23
Author(s): Florencia Schlamp, Sofie Y. N. Delbare, Angela M. Early, Martin T. Wells, Sumanta Basu, Andrew G. Clark
Software Mentions: 7
Published: about 5 years ago

10.12688/f1000research.17145.2

False positives in trans-eQTL and co-expression analyses arising from RNA-sequencing alignment errors
Cited by: 35
Author(s): Ashis Saha, Alexis Battle
Software Mentions: 7
Published: about 7 years ago

10.1155/2021/5573740

Brain Connectivity Studies on Structure-Function Relationships: A Short Survey with an Emphasis on Machine Learning
Cited by: 10
Author(s): Simon Wein, Gustavo Deco, Ana Maria Tomé, Markus Goldhacker, Wilhelm M. Malloni, Mark W. Greenlee, Elmar Lang
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0164230

Blood Plasma-Derived Anti-Glycan Antibodies to Sialylated and Sulfated Glycans Identify Ovarian Cancer Patients
Cited by: 17
Author(s): Tatiana Pochechueva, Alexander Chinarev, Andreas Schoetzau, André Fedier, Nicolai V. Bovin, Neville F. Hacker, Francis Jacob, Viola Heinzelmann‐Schwarz
Software Mentions: 7
Published: over 9 years ago

10.1371/journal.pone.0250170

Introducing Point-of-Interest as an alternative to Area-of-Interest for fixation duration analysis
Cited by: 7
Author(s): Nak Won Rim, Kyoung Whan Choe, Coltan Scrivner, Marc G. Berman
Software Mentions: 7
Published: about 5 years ago

10.1186/s12874-021-01319-5

Development and validation of a risk index to predict kidney graft survival: the kidney transplant risk index
Cited by: 7
Author(s): Sameera Senanayake, Sanjeewa Kularatna, Helen Healy, Nicholas Graves, Keshwar Baboolal, Matthew P. Sypek, Adrian Barnett
Software Mentions: 7
Published: about 5 years ago

10.3389/fgene.2020.00524

Detecting Prognosis Risk Biomarkers for Colon Cancer Through Multi-Omics-Based Prognostic Analysis and Target Regulation Simulation Modeling
Cited by: 19
Author(s): Zuojing Yin, Xinmiao Yan, Qiming Wang, Zeliang Deng, Kailin Tang, Zhiwei Cao, Tianyi Qiu
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0225577

Designing machine learning workflows with an application to topological data analysis
Cited by: 4
Author(s): Eric Cawi, Patricio S. La Rosa, Arye Nehorai
Software Mentions: 7
Published: over 6 years ago

10.12688/f1000research.17916.1

Relative Abundance of Transcripts (RATs): Identifying differential isoform abundance from RNA-seq
Cited by: 19
Author(s): Kimon Froussios, Kira Mourão, Gordon G. Simpson, Geoffrey J. Barton, Nicholas J. Schurch
Software Mentions: 7
Published: over 7 years ago

10.3389/fmicb.2019.02197

Composition of Bacterial and Archaeal Communities in an Alkali-Surfactant-Polyacrylamide-Flooded Oil Reservoir and the Responses of Microcosms to Nutrients
Cited by: 14
Author(s): Peike Gao, Li Yu, Liang Tan, Feifei Guo, Ting Ma
Software Mentions: 7
Published: almost 7 years ago

10.1016/j.isci.2020.101354

Network Approaches for Dissecting the Immune System
Cited by: 25
Author(s): Hao Shi, Koon-Kiu Yan, Liang Ding, Chenxi Qian, Hongbo Chi, Jiyang Yu
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0201016

Predicting hospital admission at emergency department triage using machine learning
Cited by: 155
Author(s): Woo Suk Hong, Adrian D. Haimovich, Richard A. Taylor
Software Mentions: 7
Published: almost 8 years ago

10.1002/evl3.245

Widespread cryptic variation in genetic architecture between the sexes
Cited by: 11
Author(s): Wouter van der Bijl, Judith E. Mank
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12859-019-2611-1

sim1000G: a user-friendly genetic variant simulator in R for unrelated individuals and family-based designs
Cited by: 18
Author(s): Apostolos Dimitromanolakis, Jingxiong Xu, Agnieszka Król, Laurent Briollais
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0130629

A Geographic Mosaic of Climate Change Impacts on Terrestrial Vegetation: Which Areas Are Most at Risk?
Cited by: 37
Author(s): David D. Ackerly, William K. Cornwell, S. B. Weiss, Lorraine E. Flint, Alan L. Flint
Software Mentions: 7
Published: about 11 years ago

10.1186/s12920-020-0695-0

Specific chromatin landscapes and transcription factors couple breast cancer subtype with metastatic relapse to lung or brain
Cited by: 20
Author(s): Wesley L. Cai, Celeste B. Greer, Jocelyn F. Chen, Anna Arnal-Estapé, Jian Cao, Qin Yan, Don X. Nguyen
Software Mentions: 7
Published: over 6 years ago

10.15252/msb.20188689

Defining the <scp>RNA</scp> interactome by total <scp>RNA</scp> ‐associated protein purification
Cited by: 103
Author(s): Vadim Shchepachev, Stefan Bresson, Christos Spanos, Elisabeth Petfalski, Lutz Fischer, Juri Rappsilber, David Tollervey
Software Mentions: 7
Published: about 7 years ago

10.15252/emmm.201910606

Novel Alzheimer risk genes determine the microglia response to amyloid‐β but not to TAU pathology
Cited by: 149
Author(s): Annerieke Sierksma, Ashley Lu, Renzo Mancuso, Nicola Fattorelli, Nicola Thrupp, Evgenia Salta, Jesus Zoco, David Blum, Luc Buée, Bart De Strooper, Mark Fiers
Software Mentions: 7
Published: over 6 years ago

10.3389/fmicb.2020.00423

The Relationships Between the Free-Living and Particle-Attached Bacterial Communities in Response to Elevated Eutrophication
Cited by: 26
Author(s): Yang Hu, Guobo Xie, Xingyu Jiang, Kwang‐Tsao Shao, Xiangming Tang, Guang Gao
Software Mentions: 7
Published: over 6 years ago

10.1186/s12859-018-2074-9

BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines
Cited by: 11
Author(s): Yözen Hernández, Rocky Bernstein, Pedro Pagan, Levy C. Vargas, William D. McCaig, Girish Ramrattan, Saymon Akther, Amanda M. Larracuente, Lia Di, Filipe Garrett Vieira, Wang Qiu
Software Mentions: 7
Published: over 8 years ago

10.3390/cancers13061296

Candidate Markers of Olaparib Response from Genomic Data Analyses of Human Cancer Cell Lines
Cited by: 3
Author(s): Setor Amuzu, Eurı́dice Carmona, Anne-Marie Mes-Masson, Celia M.T. Greenwood, Patricia N. Tonin, Jiannis Ragoussis
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0217708

Nest characteristics determine nest microclimate and affect breeding output in an Antarctic seabird, the Wilson’s storm-petrel
Cited by: 13
Author(s): Rosanne J. Michielsen, Anne N. M. A. Ausems, Dariusz Jakubas, Michał Pętlicki, Joanna Plenzler, Judy Shamoun‐Baranes, Katarzyna Wojczulanis‐Jakubas
Software Mentions: 7
Published: about 7 years ago

10.3390/life10090185

An Overview of Bioinformatics Tools for DNA Meta-Barcoding Analysis of Microbial Communities of Bioaerosols: Digest for Microbiologists
Cited by: 3
Author(s): Hamza Mbareche, Nathan Dumont-Leblond, Guillaume J. Bilodeau, Caroline Duchaine
Software Mentions: 7
Published: almost 6 years ago

10.3390/nu12102934

Dietary Sodium Intake and Risk of Cardiovascular Disease: A Systematic Review and Dose-Response Meta-Analysis
Cited by: 64
Author(s): Yijie Wang, Tzu‐Lin Yeh, Ming‐Chieh Shih, Yu‐Kang Tu, Kuo–Liong Chien
Software Mentions: 7
Published: almost 6 years ago

10.1002/ece3.5573

Signal and reward in wild fleshy fruits: Does fruit scent predict nutrient content?
Cited by: 23
Author(s): Omer Nevo, Diary Razafimandimby, Kim Valenta, Juan Antonio James Jeffrey, Christoph Reisdorff, Colin A. Chapman, Jörg U. Ganzhorn, Manfred Ayasse
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pone.0235779

Prostate MRI added to CAPRA, MSKCC and Partin cancer nomograms significantly enhances the prediction of adverse findings and biochemical recurrence after radical prostatectomy
Cited by: 7
Author(s): Kevin Sandeman, Juho Eineluoto, Joona Pohjonen, Andrew Erickson, Tuomas P. Kilpeläinen, Petrus Järvinen, Henrikki Santti, Anssi Pétas, Mika Matikainen, Suvi Marjasuo, Anu Kenttämies, Tuomas Mirtti, Antti Rannikko
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0124600

MLViS: A Web Tool for Machine Learning-Based Virtual Screening in Early-Phase of Drug Discovery and Development
Cited by: 36
Author(s): Selçuk Korkmaz, Gökmen Zararsız, Dinçer Göksülük
Software Mentions: 7
Published: about 11 years ago

10.1093/bioinformatics/btu638

HTSeq—a Python framework to work with high-throughput sequencing data
Cited by: 14,991
Author(s): Simon Anders, Paul Theodor Pyl, Wolfgang Huber
Software Mentions: 7
Published: almost 12 years ago

10.7554/eLife.28440

Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity
Cited by: 37
Author(s): Pierre Khoueiry, Charles Girardot, Lucia Ciglar, Pei-Chen Peng, E. Hilary Gustafson, Saurabh Sinha, Eileen E. M. Furlong
Software Mentions: 7
Published: almost 9 years ago

10.1002/ece3.5617

Meta‐analyzing the likely cross‐species responses to climate change
Cited by: 10
Author(s): Jean C. G. Ortega, Nathalia Ingrid Gomes Machado, José Alexandre Felizola Diniz‐Filho, Thiago F. Rangel, Miguel B. Araújo, Rafael Loyola, Luis Maurício Bini
Software Mentions: 7
Published: almost 7 years ago

10.1186/s12859-018-2347-3

DM-PhyClus: a Bayesian phylogenetic algorithm for infectious disease transmission cluster inference
Cited by: 6
Author(s): Luc Villandré, Aurélie Labbe, Bluma G. Brenner, Michel Roger, David A. Stephens
Software Mentions: 7
Published: almost 8 years ago

10.1186/s12862-020-01681-w

Species delimitation in the cyanolichen genus Rostania
Cited by: 10
Author(s): Alica Košuthová, Johannes Bergsten, Martin Westberg, Mats Wedin
Software Mentions: 7
Published: almost 6 years ago

10.1186/1471-2105-12-267

SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
Cited by: 39
Author(s): Xutao Deng
Software Mentions: 7
Published: about 15 years ago

10.1186/s12862-019-1533-x

Hooked on you: shape of attachment structures in cymothoid isopods reflects parasitic strategy
Cited by: 14
Author(s): Charles Baillie, Rachel L. Welicky, Kerry A. Hadfield, Stefano Mariani, Robin M. D. Beck
Software Mentions: 7
Published: over 6 years ago

10.1002/ece3.4052

Phylogenetic signal in tooth wear dietary niche proxies
Cited by: 23
Author(s): Danielle Fraser, Ryan J. Haupt, W. Andrew Barr
Software Mentions: 7
Published: about 8 years ago

10.1186/s13040-017-0150-8

RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study
Cited by: 15
Author(s): Bork A. Berghoff, Torgny Karlsson, Thomas Källman, E. Gerhart H. Wagner, Manfred Grabherr
Software Mentions: 7
Published: almost 9 years ago

10.3389/fonc.2020.608334

Nomogram for Predicting Lymph Node Involvement in Triple-Negative Breast Cancer
Cited by: 18
Author(s): Xiang Cui, Hongxia Zhu, Jiefu Huang
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pbio.3001390

Identifying and prioritizing potential human-infecting viruses from their genome sequences
Cited by: 43
Author(s): Nardus Mollentze, Simon A. Babayan, Daniel G. Streicker
Software Mentions: 7
Published: almost 5 years ago

10.1111/mec.15366

Genomic patterns in the widespread Eurasian lynx shaped by Late Quaternary climatic fluctuations and anthropogenic impacts
Cited by: 36
Author(s): María Lucena-Pérez, Elena Marmesat, Daniel Kleinman‐Ruiz, Begoña Martínez‐Cruz, Karolina Wȩcek, Alexander P. Saveljev, Ivan V. Seryodkin, И. М. Охлопков, Mikhail G. Dvornikov, Jurijs Ozoliņš, Naranbaatar Galsandorj, Milan Paunović, Mirosław Ratkiewicz, Krzysztof Schmidt, José A. Godoy
Software Mentions: 7
Published: over 6 years ago

10.1002/ece3.5852

Investigating the environmental drivers of deep‐seafloor biodiversity: A case study of peracarid crustacean assemblages in the Northwest Atlantic Ocean
Cited by: 13
Author(s): Oliver S. Ashford, Andrew Kenny, Christopher R.S. Barrio Froján, Tammy Horton, Alex D. Rogers
Software Mentions: 7
Published: over 6 years ago

10.3390/microorganisms8010061

Prenatal Transfer of Gut Bacteria in Rock Pigeon
Cited by: 14
Author(s): Maurine W. Dietz, Joana Falcão Salles, Bin‐Yan Hsu, Cor Dijkstra, Ton G. G. Groothuis, Marco van der Velde, Yvonne I. Verkuil, B. Irene Tieleman
Software Mentions: 7
Published: over 6 years ago

10.3389/fgene.2021.651812

MRPC: An R Package for Inference of Causal Graphs
Cited by: 2
Author(s): Md. Bahadur Badsha, Evan A Martin, Audrey Qiuyan Fu
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-018-26592-1

Asymmetric distribution of biomolecules of maternal origin in the Xenopus laevis egg and their impact on the developmental plan
Cited by: 13
Author(s): Radek Šindelka, Pavel Abaffy, Yanyan Qu, Silvie Tománková, Monika Šídová, Ravindra Naraine, Michal Kolář, Elizabeth H. Peuchen, Liangliang Sun, Norman J. Dovic̀hi, Mikael Kubista
Software Mentions: 7
Published: about 8 years ago

10.3389/fninf.2014.00023

CyNEST: a maintainable Cython-based interface for the NEST simulator
Cited by: 22
Author(s): Yury V. Zaytsev, Abigail Morrison
Software Mentions: 7
Published: over 12 years ago

10.1371/journal.pone.0083984

Characterizing the Infection-Induced Transcriptome of Nasonia vitripennis Reveals a Preponderance of Taxonomically-Restricted Immune Genes
Cited by: 34
Author(s): Timothy B. Sackton, John H. Werren, Andrew G. Clark
Software Mentions: 7
Published: over 12 years ago

10.3390/ani11051442

Agricultural Holdings and Slaughterhouses’ Impact on Patterns of Pathological Findings Observed during Post-Mortem Meat Inspection
Cited by: 5
Author(s): Johannes Klinger, Beate Conrady, Marina Mikula, Annemarie Käsbohrer
Software Mentions: 7
Published: about 5 years ago

10.3389/fnsys.2016.00073

Construction and Operation of a High-Speed, High-Precision Eye Tracker for Tight Stimulus Synchronization and Real-Time Gaze Monitoring in Human and Animal Subjects
Cited by: 5
Author(s): Reza Farivar, Danny Michaud-Landry
Software Mentions: 7
Published: almost 10 years ago

10.1038/s41598-019-54700-2

Murine xenograft bioreactors for human immunopeptidome discovery
Cited by: 8
Author(s): James Heather, Paisley T. Myers, Feng Shi, Mohammad Ovais Aziz‐Zanjani, Keira E. Mahoney, Matthew Perez, Benjamin Morin, Christine Brittsan, Jeffrey Shabanowitz, Donald F. Hunt, Mark Cobbold
Software Mentions: 7
Published: over 6 years ago

10.12688/f1000research.11840.4

GAC: Gene Associations with Clinical, a web based application
Cited by: 1
Author(s): Xinyan Zhang, Manali Rupji, Jeanne Kowalski
Software Mentions: 7
Published: over 8 years ago

10.1186/s13059-019-1862-5

scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data
Cited by: 225
Author(s): José Alquicira-Hernández, Anuja Sathe, Hanlee P. Ji, Quan Nguyen, Joseph E. Powell
Software Mentions: 7
Published: over 6 years ago

10.3389/fgene.2021.744113

Identification and Validation of Hypoxia-Related lncRNA Signature as a Prognostic Model for Hepatocellular Carcinoma
Cited by: 8
Author(s): Chengke Zhou, Huajun Zhang, Liqing Lu
Software Mentions: 7
Published: almost 5 years ago

10.3389/fpls.2021.684192

Agrobacterium VirE2 Protein Modulates Plant Gene Expression and Mediates Transformation From Its Location Outside the Nucleus
Cited by: 7
Author(s): Rachelle A. Lapham, Lan‐Ying Lee, Eder Xhako, Esteban Gañán Gómez, V. M. Nivya, Stanton B. Gelvin
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0171072

Forest biomass density across large climate gradients in northern South America is related to water availability but not with temperature
Cited by: 67
Author(s): Esteban Álvarez-Dávila, Luis Cayuela, Sebastián González‐Caro, Ana M. Aldana, Pablo R. Stevenson, Oliver L. Phillips, Álvaro Cogollo, M. C. Peñuela, Patricio von Hildebrand, Eliana Jiménez, Omar Melo, Ana Catalina Londoño-Vega, Irina Mendoza, Oswaldo Velásquez, Fernando Fernández, Marcela Serna, Cesar Velázquez-Rua, Doris Benítez, José María Rey‐Benayas
Software Mentions: 7
Published: over 9 years ago

10.1038/s41598-020-79898-4

Physical distancing and risk of COVID-19 in small-scale fisheries: a remote sensing assessment in coastal Ghana
Cited by: 43
Author(s): Isaac Okyere, Ernest Obeng Chuku, Bernard Ekumah, Donatus Bapentire Angnuureng, Justice K. Boakye-Appiah, David J. Mills, Raymond Babanawo, Noble Kwame Asare, Denis Worlanyo Aheto, Brian Crawford
Software Mentions: 7
Published: over 5 years ago

10.1111/1751-7915.13634

Soil microbiota influences clubroot disease by modulating <i>Plasmodiophora brassicae</i> and <i>Brassica napus</i> transcriptomes
Cited by: 19
Author(s): Stéphanie Daval, Kévin Gazengel, Arnaud Belcour, Juliette Linglin, Anne‐Yvonne Guillerm‐Erckelboudt, Alain Sarniguet, Maria Manzanares-Dauleux, Lionel Lebreton, Christophe Mougel
Software Mentions: 7
Published: almost 6 years ago

10.3389/fpsyg.2018.02358

East Asian Young and Older Adult Perceptions of Emotional Faces From an Age- and Sex-Fair East Asian Facial Expression Database
Cited by: 13
Author(s): Yu-Zhen Tu, Dai-Jie Lin, Atsunobu Suzuki, Joshua Oon Soo Goh
Software Mentions: 7
Published: over 7 years ago

10.1186/s12864-021-07489-2

Datura genome reveals duplications of psychoactive alkaloid biosynthetic genes and high mutation rate following tissue culture
Cited by: 5
Author(s): Alex Rajewski, Derreck Carter-House, Jason E. Stajich, Amy Litt
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-018-38195-x

Shared cis-regulatory architecture identified across defense response genes is associated with broad-spectrum quantitative resistance in rice
Cited by: 5
Author(s): Bradley W. Tonnessen, A. M. Bossa-Castro, Ramil Mauleon, Nickolai Alexandrov, Jan E. Leach
Software Mentions: 7
Published: over 7 years ago

10.1186/s40168-017-0302-6

Influence of the pneumococcal conjugate vaccines on the temporal variation of pneumococcal carriage and the nasal microbiota in healthy infants: a longitudinal analysis of a case–control study
Cited by: 27
Author(s): Moana Mika, Josua Maurer, Insa Korten, Aurélie Allemann, Suzanne Aebi, Silvio D. Brugger, Weihong Qi, Urs Frey, Philipp Latzin, Markus Hilty
Software Mentions: 7
Published: almost 9 years ago

10.12688/f1000research.11290.1

Gene length and detection bias in single cell RNA sequencing protocols
Cited by: 71
Author(s): Belinda Phipson, Luke Zappia, Alicia Oshlack
Software Mentions: 7
Published: about 9 years ago

10.1093/conphys/cox020

Habitat disturbance results in chronic stress and impaired health status in forest-dwelling paleotropical bats
Cited by: 32
Author(s): Anne Seltmann, Gábor Á. Czirják, Alexandre Courtiol, Henry Bernard, Matthew J. Struebig, Christian C. Voigt
Software Mentions: 7
Published: over 9 years ago

10.1016/j.ebiom.2021.103390

AI-guided discovery of the invariant host response to viral pandemics
Cited by: 31
Author(s): Debashis Sahoo, Gajanan D. Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo, Courtney Tindle, MacKenzie Fuller, Sahar Taheri, Thomas F. Rogers, Nathan Beutler, Sydney I. Ramirez, Stephen A. Rawlings, Victor Pretorius, Davey M Smith, Dennis R. Burton, Laura E. Crotty Alexander, Jason Duran, Shane Crotty, Jennifer M. Dan, Soumita Das, Pradipta Ghosh
Software Mentions: 7
Published: about 5 years ago

10.3389/fmed.2021.635771

Application of Machine Learning Algorithms to Predict Central Lymph Node Metastasis in T1-T2, Non-invasive, and Clinically Node Negative Papillary Thyroid Carcinoma
Cited by: 35
Author(s): Jiang Zhu, Jinxin Zheng, Longfei Li, Rui Huang, Haoyu Ren, Denghui Wang, Zhijun Dai, Xinliang Su
Software Mentions: 7
Published: over 5 years ago

10.3389/fped.2021.654596

Adverse Maternal and Neonatal Outcomes in Women With Elevated Intrapartum Temperature Complicated by Histological Chorioamnionitis at Term: A Propensity-Score Matched Study
Cited by: 2
Author(s): Yingzhou Ge, Chen Zhang, Yanqing Cai, He‐Feng Huang
Software Mentions: 7
Published: about 5 years ago

10.1186/s12898-018-0187-7

A random survival forest illustrates the importance of natural enemies compared to host plant quality on leaf beetle survival rates
Cited by: 5
Author(s): Thomas A. Verschut, Peter A. Hambäck
Software Mentions: 7
Published: almost 8 years ago

10.3390/molecules25246057

QSAR Model for Predicting the Cannabinoid Receptor 1 Binding Affinity and Dependence Potential of Synthetic Cannabinoids
Cited by: 5
Author(s): Won Young Lee, So‐Jung Park, Ji-Young Hwang, Choon‐Gon Jang, Yong Sup Lee, Jongmin Kim, Xiaodi Zhao, Aekyung Park, Kyung Hoon Min, Choon‐Gon Jang, Hyun-Ju Park
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2021.698278

A Focal Adhesion-Related Gene Signature Predicts Prognosis in Glioma and Correlates With Radiation Response and Immune Microenvironment
Cited by: 7
Author(s): Haonan Li, Guohui Wang, Wenyan Wang, Jie Pan, Huandi Zhou, Xuetao Han, Linlin Su, Zhenghui Ma, Liubing Hou, Xiaoying Xue
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0206507

Assessing mental health service user and carer involvement in physical health care planning: The development and validation of a new patient-reported experience measure
Cited by: 3
Author(s): Chris Sidey‐Gibbons, Helen Brooks, Judith Gellatly, Nicola Small, Karina Lovell, Penny Bee
Software Mentions: 7
Published: over 7 years ago

10.1186/s13321-020-00481-0

ChemSpectra: a web-based spectra editor for analytical data
Cited by: 8
Author(s): Yu‐Chieh Huang, Pierre Tremouilhac, An Nguyẽ̂n, Nicole Jung, Stefan Bräse
Software Mentions: 7
Published: over 5 years ago

10.3389/fgene.2021.635863

Identification and Validation of a Novel DNA Damage and DNA Repair Related Genes Based Signature for Colon Cancer Prognosis
Cited by: 16
Author(s): Xuequan Wang, Shiwen Xu, Wei Wang, Shang Guo Piao, Xin-Li Mao, Xian-Bin Zhou, Yi Wang, Weidan Wu, Liping Ye, Shaowei Li
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0126545

Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability
Cited by: 15
Author(s): Karolis Uziela, Antti Honkela
Software Mentions: 7
Published: about 11 years ago

10.1038/s41598-021-93922-1

Life experience rather than domestication accounts for dogs’ increased oxytocin release during social contact with humans
Cited by: 19
Author(s): Gwendolyn Wirobski, Friederike Range, Franka Simea Schaebs, Rüpert Palme, Tobias Deschner, Sarah Marshall-Pescini
Software Mentions: 7
Published: almost 5 years ago

10.1098/rspb.2021.0701

Transgenerational fitness effects of lifespan extension by dietary restriction in <i>Caenorhabditis elegans</i>
Cited by: 14
Author(s): Edward Ivimey‐Cook, Kris Sales, Hanne Carlsson, Simone Immler, Tracey Chapman, Alexei A. Maklakov
Software Mentions: 7
Published: about 5 years ago

10.1186/s13071-017-2140-6

Landscape structure affects distribution of potential disease vectors (Diptera: Culicidae)
Cited by: 41
Author(s): Carina Zittra, Simon Vitecek, Adelheid G. Obwaller, Heidemarie Rossiter, Barbara Eigner, Thomas Zechmeister, Johann Waringer, Hans‐Peter Fuehrer
Software Mentions: 7
Published: about 9 years ago

10.1007/s00426-019-01206-1

The effect of episodic retrieval on inhibition in task switching: a diffusion model analysis
Cited by: 9
Author(s): Agnieszka W Kowalczyk, James A. Grange
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.pone.0163962

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation
Cited by: 1,226
Author(s): Wei Shen, Shuai Le, Yan Li, Fuquan Hu
Software Mentions: 7
Published: over 9 years ago

10.1371/journal.pgen.1009566

Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies
Cited by: 19
Author(s): James R. Whiting, Josephine R. Paris, Mijke J. van der Zee, Paul J. Parsons, Detlef Weigel, Bonnie A. Fraser
Software Mentions: 7
Published: about 5 years ago

10.7554/eLife.60586

Task specialization across research careers
Cited by: 17
Author(s): Nicolás Robinson-García, Rodrigo Costas, Cassidy R. Sugimoto, Vincent Larivière, Gabriela F. Nane
Software Mentions: 7
Published: over 5 years ago

10.1186/s12859-018-2435-4

Single sample scoring of molecular phenotypes
Cited by: 230
Author(s): Momeneh Foroutan, Dharmesh D. Bhuva, Ruqian Lyu, Kristy Horan, Joseph Cursons, Melissa J. Davis
Software Mentions: 7
Published: over 7 years ago

10.3389/fgene.2019.00400

NormExpression: An R Package to Normalize Gene Expression Data Using Evaluated Methods
Cited by: 10
Author(s): Zhenfeng Wu, Weixiang Liu, Xiufeng Jin, Haishuo Ji, Hua Wang, Gustavo Glusman, Max Robinson, Lin Liu, Jishou Ruan, Shan Gao
Software Mentions: 7
Published: about 7 years ago

10.1001/jamanetworkopen.2020.0094

Longitudinal Maintenance of Cognitive Health in Centenarians in the 100-plus Study
Cited by: 23
Author(s): Nina Beker, Sietske A.M. Sikkes, Marc Hulsman, Niccolò Tesi, Sven J. van der Lee, Philip Scheltens, Henne Holstege
Software Mentions: 7
Published: over 6 years ago

10.7717/peerj.642

Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse<i>Peromyscus eremicus</i>
Cited by: 34
Author(s): Matthew D. MacManes, Michael B. Eisen
Software Mentions: 7
Published: over 11 years ago

10.1002/ece3.6588

Investigating population‐scale allelic differential expression in wild populations of <i>Oithona similis</i> (Cyclopoida, Claus, 1866)
Cited by: 8
Author(s): Romuald Laso-Jadart, Kevin Sugier, Emmanuelle Petit, Karine Labadie, Pierre Peterlongo, Christophe Ambroise, Patrick Wincker, Jean‐Louis Jamet, Mohammed‐Amin Madoui
Software Mentions: 7
Published: almost 6 years ago

10.1038/srep40914

Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes
Cited by: 69
Author(s): Franziska Wemheuer, Kristin Kaiser, Petr Karlovský, Rolf Daniel, Stefan Vidal, Bernd Wemheuer
Software Mentions: 7
Published: over 9 years ago

10.1038/s42003-019-0303-z

Mimicry in viceroy butterflies is dependent on abundance of the model queen butterfly
Cited by: 13
Author(s): Kathleen L. Prudic, Barbara N. Timmermann, Daniel R. Papaj, David B. Ritland, Jeffrey C. Oliver
Software Mentions: 7
Published: over 7 years ago

10.1002/1878-0261.12923

Epigenetic and transcriptional analysis reveals a core transcriptional program conserved in clonal prostate cancer metastases
Cited by: 8
Author(s): Tesa Severson, Yanyun Zhu, Angelo M. De Marzo, Tracy Jones, Jonathan W. Simons, William G. Nelson, Srinivasan Yegnasubramanian, Matthew L. Freedman, Lodewyk F.A. Wessels, Andries M. Bergman, Michael C. Haffner, Wilbert Zwart
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-020-67324-8

Venom alkaloids against Chagas disease parasite: search for effective therapies
Cited by: 10
Author(s): Rafael Cardoso Maciel Costa Silva, Eduardo Gonçalves Paterson Fox, Fabio M. Gomes, Daniel F. Feijó, Isabela Ramos, Carolina M. Koeller, Tatiana F. R. Costa, Nathalia S. Rodrigues, Ana Paula Lima, Geórgia C. Atella, Kildare Miranda, Alejandra Cecilia Schoijet, Guillermo D. Alonso, Ednildo A. Machado, Norton Heise
Software Mentions: 7
Published: about 6 years ago

10.7554/eLife.63194

Evolutionary dynamics of transposable elements in bdelloid rotifers
Cited by: 21
Author(s): Reuben W. Nowell, Christopher G. Wilson, Pedro Almeida, Philipp H. Schiffer, Diego Fontaneto, Lutz Becks, Fernando Rodríguez, Irina R. Arkhipova, Timothy G. Barraclough
Software Mentions: 7
Published: over 5 years ago

10.1093/gigascience/giy023

The Scientific Filesystem
Cited by: 1
Author(s): Vanessa Sochat
Software Mentions: 7
Published: over 8 years ago