10.3389/fgene.2021.744113

Identification and Validation of Hypoxia-Related lncRNA Signature as a Prognostic Model for Hepatocellular Carcinoma
Cited by: 8
Author(s): Chengke Zhou, Huajun Zhang, Liqing Lu
Software Mentions: 7
Published: almost 5 years ago

10.1186/s40462-020-00233-7

Urban specialization reduces habitat connectivity by a highly mobile wading bird
Cited by: 7
Author(s): Claire S. Teitelbaum, Jeffrey Hepinstall‐Cymerman, Anjelika Kidd-Weaver, Sonia M. Hernández, Sonia Altizer, Richard J. Hall
Software Mentions: 7
Published: over 5 years ago

10.3389/fpls.2021.627573

Do Invasive Earthworms Affect the Functional Traits of Native Plants?
Cited by: 4
Author(s): Lise Thouvenot, Olga Ferlian, Rémy Beugnon, Tom Künne, Alfred Lochner, Madhav P. Thakur, Manfred Türke, Nico Eisenhauer
Software Mentions: 7
Published: over 5 years ago

10.1038/srep29042

Integrating roots into a whole plant network of flowering time genes in Arabidopsis thaliana
Cited by: 35
Author(s): Frédéric Bouché, Maria D’Aloia, Pierre Tocquin, Guillaume Lobet, Nathalie Detry, Claire Périlleux
Software Mentions: 7
Published: about 10 years ago

10.3390/insects11090553

Structure of the Assemblages of Spiders in Mediterranean Pear Orchards and the Effect of Intensity of Spraying
Cited by: 3
Author(s): Luis de Pedro, María Carmen Ortín-Angulo, J. Miñano, Elena López‐Gallego, J. Sánchez
Software Mentions: 7
Published: almost 6 years ago

10.3389/fpsyg.2018.01748

The Semantic Content of Abstract Concepts: A Property Listing Study of 296 Abstract Words
Cited by: 57
Author(s): Marcel Harpaintner, Natalie M. Trumpp, Markus Kiefer
Software Mentions: 7
Published: almost 8 years ago

10.2196/21978

Public Perception of the COVID-19 Pandemic on Twitter: Sentiment Analysis and Topic Modeling Study
Cited by: 253
Author(s): Sakun Boon‐itt, Yukolpat Skunkan
Software Mentions: 7
Published: over 5 years ago

10.3390/insects12050374

Buzzing Homes: Using Citizen Science Data to Explore the Effects of Urbanization on Indoor Mosquito Communities
Cited by: 7
Author(s): Nadja Pernat, Helge Kampen, Jonathan M. Jeschke, Doreen Werner
Software Mentions: 7
Published: about 5 years ago

10.1002/1873-3468.13278

The gut microbiome participates in transgenerational inheritance of low‐temperature responses in <i>Drosophila melanogaster</i>
Cited by: 23
Author(s): Aman Zare, Anna-Mia Johansson, Edvin Karlsson, Nicolas Delhomme, Per Stenberg
Software Mentions: 7
Published: over 7 years ago

10.3389/fpls.2020.572112

Expression of Putative Defense Responses in Cannabis Primed by Pseudomonas and/or Bacillus Strains and Infected by Botrytis cinerea
Cited by: 16
Author(s): Carole Balthazar, Gabrielle Cantin, Amy Novinscak, David L. Joly, Martin Filion
Software Mentions: 7
Published: over 5 years ago

10.1186/s12918-018-0598-2

A systematic survey of centrality measures for protein-protein interaction networks
Cited by: 122
Author(s): Mohieddin Jafari, Ali Salehzadeh‐Yazdi, Zahra Razaghi-Moghadam, Holger Hennig, Olaf Wolkenhauer, Mehdi Mirzaie, Mohieddin Jafari
Software Mentions: 7
Published: almost 8 years ago

10.1016/j.heliyon.2021.e06160

Genomic evidence supports the introgression between two sympatric stickleback species inhabiting the White Sea basin
Cited by: 4
Author(s): Artem Nedoluzhko, Fedor Sharko, Svetlana Tsygankova, Eugenia Boulygina, Amina S. Ibragimova, Anton Teslyuk, Jorge Galindo-Villegas, С. М. Расторгуев
Software Mentions: 7
Published: over 5 years ago

10.1093/bioinformatics/btu616

Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking
Cited by: 112
Author(s): Paul J. McMurdie, Susan Holmes
Software Mentions: 7
Published: almost 12 years ago

10.1038/s41598-021-92036-y

Capitalizing on transcriptome profiling to optimize and identify targets for promoting early murine folliculogenesis in vitro
Cited by: 6
Author(s): Andrea Jones, Beatriz Peñalver Bernabé, Vasantha Padmanabhan, Jun Li, Ariella Shikanov
Software Mentions: 7
Published: about 5 years ago

10.1172/jci.insight.138066

Effector Vγ9Vδ2 T cell response to congenital Toxoplasma gondii infection
Cited by: 3
Author(s): Lifang Ma, Maria V. Papadopoulou, Martin Taton, Francesca Genco, Arnaud Marchant, Valeria Meroni, David Vermijlen
Software Mentions: 7
Published: almost 5 years ago

10.3389/fonc.2020.553399

CD8+ T Cell Co-Expressed Genes Correlate With Clinical Phenotype and Microenvironments of Urothelial Cancer
Cited by: 20
Author(s): Yutao Wang, Kexin Yan, Jiaxing Lin, Yang Liu, Jianfeng Wang, Xuejie Li, Xinxin Li, Zhixiong Hua, Zhenhua Zheng, Jianxiu Shi, Siqing Sun, Jianbin Bi
Software Mentions: 7
Published: over 5 years ago

10.1136/jitc-2021-002467

Tumor microenvironment evaluation promotes precise checkpoint immunotherapy of advanced gastric cancer
Cited by: 75
Author(s): Dongqiang Zeng, Jiani Wu, Hongyu Luo, Yong Li, Jian Xiao, Jianjun Peng, Zilan Ye, Rui Zhou, Yunfang Yu, Gaofeng Wang, Na Huang, Jianhua Wu, Xiaoxiang Rong, Li Sun, Huiying Sun, Wenjun Qiu, Yuting Xue, Jianping Bin, Yulin Liao, Li N, Min Shi, Kyoung‐Mee Kim, Wangjun Liao
Software Mentions: 7
Published: almost 5 years ago

10.3389/fpls.2021.695867

Comparing Exogenous Methods to Induce Plant-Resistance Against a Bark-Feeding Insect
Cited by: 3
Author(s): Yayuan Chen, Adriana Puentes, Christer Björkman, Agnès Brosset, Helena Bylund
Software Mentions: 7
Published: almost 5 years ago

10.3389/fcell.2021.651593

An Immune-Related Long Non-Coding RNA Signature to Predict the Prognosis of Ewing’s Sarcoma Based on a Machine Learning Iterative Lasso Regression
Cited by: 4
Author(s): Enhui Ren, Yajun Deng, Wenhua Yuan, Guangzhi Zhang, Zhi-Xi Wu, Chunying Li, Qiqi Xie
Software Mentions: 7
Published: about 5 years ago

10.3389/fcell.2021.658642

HNRNPA2B1 Affects the Prognosis of Esophageal Cancer by Regulating the miR-17-92 Cluster
Cited by: 21
Author(s): Kexin Li, Jiongyu Chen, Xiaoying Lou, Yiling Li, Benheng Qian, Danfei Xu, Yue Wu, Shaohui Ma, Donghong Zhang, Wei Cui
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-020-64794-8

Integrative genomics approach identifies molecular features associated with early-stage ovarian carcinoma histotypes
Cited by: 12
Author(s): Hanna Engqvist, Toshima Z. Parris, Jana Biermann, Elisabeth Werner Rönnerman, Peter Larsson, Karin Sundfeldt, Anikó Kovács, Per Karlsson, Khalil Helou
Software Mentions: 7
Published: about 6 years ago

10.3390/jcm7120567

Systematic Review of Variations in Hyperthermic Intraperitoneal Chemotherapy (HIPEC) for Peritoneal Metastasis from Colorectal Cancer
Cited by: 57
Author(s): Can Yurttas, Giulia Hoffmann, Alexander Tolios, Sebastian P. Haen, Matthias Schwab, Ingmar Königsrainer, Alfred Königsrainer, Stefan Beckert, Markus Löffler
Software Mentions: 7
Published: over 7 years ago

10.1111/jcmm.16327

Development and verification of an immune‐related gene pairs prognostic signature in ovarian cancer
Cited by: 13
Author(s): Zhenan Bao, Xiaocui Nie, Xinxin Miao, Shengke Wang, Jing Li
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.7646

Many ways to make darker flies: Intra‐ and interspecific variation in <i>Drosophila</i> body pigmentation components
Cited by: 5
Author(s): Elvira Lafuente, Filipa Alves, Jessica G. King, Carolina M Peralta, Patrícia Beldade
Software Mentions: 7
Published: about 5 years ago

10.1038/s41422-019-0168-1

Pioneering function of Isl1 in the epigenetic control of cardiomyocyte cell fate
Cited by: 64
Author(s): Rui Gao, Xingqun Liang, Sirisha Cheedipudi, Julio Cordero, Xiyi Jiang, Qingquan Zhang, Luca Caputo, Stefan Günther, Carsten Kuenne, Yongcheng Ren, Shoumo Bhattacharya, Xuejun Yuan, Guillermo Barreto, Yihan Chen, Thomas Braun, Sylvia M. Evans, Yunfu Sun, Gergana Dobreva
Software Mentions: 7
Published: about 7 years ago

10.3389/fphar.2020.613328

Pharmacological Prevention of Neonatal Opioid Withdrawal in a Pregnant Guinea Pig Model
Cited by: 3
Author(s): Alireza Safa, Allison R. Lau, Sydney Aten, Karl Schilling, Karen L. Bales, Victoria A. Miller, Julie Fitzgerald, Min Chen, Katherine E. Hill, Kyle Dzwigalski, Karl Obrietan, Mitch A. Phelps, Wolfgang Sadée, John Oberdick
Software Mentions: 7
Published: over 5 years ago

10.3390/proteomes7040032

In Silico Identification of Antimicrobial Peptides in the Proteomes of Goat and Sheep Milk and Feta Cheese
Cited by: 11
Author(s): Marios Tomazou, Anastasis Oulas, Athanasios K. Anagnostopoulos, George Th. Tsangaris, George M. Spyrou
Software Mentions: 7
Published: almost 7 years ago

10.7554/eLife.49874

Discovery proteomics in aging human skeletal muscle finds change in spliceosome, immunity, proteostasis and mitochondria
Cited by: 114
Author(s): Ceereena Ubaida‐Mohien, Alexey E. Lyashkov, Marta González-Freire, Ravi Tharakan, Michelle Shardell, Ruin Moaddel, Richard D. Semba, Chee W. Chia, Myriam Gorospe, Ranjan Sen, Luigi Ferrucci
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-020-60575-5

Dung beetles response to livestock management in three different regional contexts
Cited by: 8
Author(s): Celeste Beatriz Guerra Alonso, Gustavo A. Zurita, M. Isabel Bellocq
Software Mentions: 7
Published: over 6 years ago

10.3389/fnins.2019.01042

Previous Musical Experience and Cortical Thickness Relate to the Beneficial Effect of Motor Synchronization on Auditory Function
Cited by: 3
Author(s): Natascha Merten, Johanna Kramme, Monique M.B. Breteler, Sibylle C. Herholz
Software Mentions: 7
Published: almost 7 years ago

10.3389/fcell.2021.668810

Novel Molecular Subtypes and Related Score Based on Histone Acetylation Modification in Renal Clear Cell Carcinoma
Cited by: 3
Author(s): Qianqian Wang, Ting Xiang, Ling Yu, Junping Wen, Fang Liu, Dong Yang, Wei Wu, Ling Hu
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0243672

Characterisation and chemometric evaluation of 17 elements in ten seaweed species from Greenland
Cited by: 11
Author(s): Katharina Kreissig, Lisbeth Truelstrup Hansen, Pernille Erland Jensen, Susse Wegeberg, Ole Geertz‐Hansen, Jens Jørgen Sloth
Software Mentions: 7
Published: over 5 years ago

10.1186/s12983-021-00392-2

Origin, behaviour, and genetics of reproductive workers in an invasive ant
Cited by: 2
Author(s): Pauline Lenancker, Heike Feldhaar, Anja Holzinger, Melinda Greenfield, Angela Strain, Peter Yeeles, Benjamin D. Hoffmann, Wee Tek Tay, Lori Lach
Software Mentions: 7
Published: over 5 years ago

10.3389/fnbeh.2019.00157

Early Life Stress Restricts Translational Reactivity in CA3 Neurons Associated With Altered Stress Responses in Adulthood
Cited by: 37
Author(s): Jordan Marrocco, Jason D. Gray, Joshua F. Kogan, Nathan R. Einhorn, Emma M. O’Cinneide, Todd G. Rubin, Thomas Carroll, Eric F. Schmidt, Bruce S. McEwen
Software Mentions: 7
Published: almost 7 years ago

10.1038/s41598-018-37145-x

Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behavior
Cited by: 22
Author(s): Jean‐Baptiste Juhel, Laurent Vigliola, Laurent Wantiez, Tom B. Letessier, Jessica J. Meeuwig, David Mouillot
Software Mentions: 7
Published: over 7 years ago

10.3389/fonc.2020.603717

Enhanced Angiogenesis in Salivary Duct Carcinoma Ex-Pleomorphic Adenoma
Cited by: 6
Author(s): Takayoshi Suzuki, Satoshi Kano, Masanobu Suzuki, Shinichiro Yasukawa, Takatsugu Mizumachi, Nobuko Tsushima, Kanako C. Hatanaka, Yutaka Hatanaka, Yoshihiro Matsuno, Akihiro Homma
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.1162

Protected areas alleviate climate change effects on northern bird species of conservation concern
Cited by: 36
Author(s): Raimo Virkkala, Juha Pöyry, Risto K. Heikkinen, Aleksi Lehikoinen, Jari Valkama
Software Mentions: 7
Published: almost 12 years ago

10.1371/journal.pone.0200729

The murine female intestinal microbiota does not shift throughout the estrous cycle
Cited by: 18
Author(s): Jessica G. Wallace, Ryan Potts, Jake C. Szamosi, Michael G. Surette, Deborah M. Sloboda
Software Mentions: 7
Published: almost 8 years ago

10.3389/fpls.2020.00685

Hybridization Between Yuccas From Baja California: Genomic and Environmental Patterns
Cited by: 9
Author(s): María Clara Arteaga, Rafael Bello-Bedoy, Jaime Gasca-Pineda
Software Mentions: 7
Published: about 6 years ago

10.1002/ece3.4695

Temperature effects on prey and basal resources exceed that of predators in an experimental community
Cited by: 12
Author(s): Madhav P. Thakur, John N. Griffin, Tom Künne, Susanne Dunker, Andrea Fanesi, Nico Eisenhauer
Software Mentions: 7
Published: over 7 years ago

10.1128/AEM.01715-20

Risk Factors Associated with Carbapenemase-Producing <i>Enterobacterales</i> (CPE) Positivity in the Hospital Wastewater Environment
Cited by: 9
Author(s): Stacy C. Park, Hardik I. Parikh, Kasi Vegesana, Nicole Stoesser, Katie E. Barry, Shireen Meher Kotay, Sarah Dudley, Timothy E. A. Peto, Derrick W. Crook, A. Sarah Walker, Amy J Mathers
Software Mentions: 7
Published: over 5 years ago

10.1186/s13071-020-04522-3

High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses
Cited by: 10
Author(s): Antoine Mignotte, Claire Garros, Simon Dellicour, Maude Jacquot, Marius Gilbert, Laëtitia Gardès, Thomas Balenghien, Maxime Duhayon, Ignace Rakotoarivony, Maïa de Wavrechin, Karine Huber
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.5500

Diversity matters: Effects of density compensation in pollination service during rainfall shift
Cited by: 10
Author(s): Ronita Mukherjee, Rittik Deb, Soubadra Devy
Software Mentions: 7
Published: almost 7 years ago

10.1186/1476-069X-12-85

Statistical strategies for constructing health risk models with multiple pollutants and their interactions: possible choices and comparisons
Cited by: 112
Author(s): Zhichao Sun, Yuansheng Tao, Shi Li, Kelly K. Ferguson, John D. Meeker, Sung Kyun Park, Stuart Batterman, Bhramar Mukherjee
Software Mentions: 7
Published: over 12 years ago

10.1186/1471-2105-14-145

Quality control, analysis and secure sharing of Luminex® immunoassay data using the open source LabKey Server platform
Cited by: 10
Author(s): Josh Eckels, Cory Nathe, Elizabeth Nelson, Sara G Shoemaker, Elizabeth Van Nostrand, Nicole L. Yates, Vicki C. Ashley, Linda J. Harris, Mark Bollenbeck, Youyi Fong, Georgia D. Tomaras, Britt Piehler
Software Mentions: 7
Published: about 13 years ago

10.1111/eva.12849

Single nucleotide polymorphisms reveal a genetic cline across the north‐east Atlantic and enable powerful population assignment in the European lobster
Cited by: 33
Author(s): Tom L. Jenkins, Charlie D. Ellis, Alexandros Triantafyllidis, Jamie R. Stevens
Software Mentions: 7
Published: almost 7 years ago

10.1186/s12885-017-3689-3

GRcalculator: an online tool for calculating and mining dose–response data
Cited by: 57
Author(s): Nicholas Clark, Marc Hafner, Michal Kouril, Liz Williams, Jeremy Muhlich, Marcin Pilarczyk, Mario Niepel, Peter K. Sorger, Mario Medvedovic
Software Mentions: 7
Published: over 8 years ago

10.3389/fendo.2021.712513

Construction of a Prognostic Risk Prediction Model for Obesity Combined With Breast Cancer
Cited by: 1
Author(s): Na Sun, Dandan Ma, Peng Gao, Yanling Li, Zexuan Yan, Zaihui Peng, Fei Han, Yi Zhang, Xiaowei Qi
Software Mentions: 7
Published: almost 5 years ago

10.3389/fimmu.2021.694680

Gene Set Enrichment Analysis Reveals Individual Variability in Host Responses in Tuberculosis Patients
Cited by: 5
Author(s): Teresa Domaszewska, Joanna Żyła, Raik Otto, Stefan H. E. Kaufmann, January Weiner
Software Mentions: 7
Published: almost 5 years ago

10.3390/diagnostics11060981

Infrared Thermography as a Method of Verification in Raynaud’s Phenomenon
Cited by: 2
Author(s): Lotte Lindberg, Bent Bruun Kristensen, Ebbe Eldrup, Jane Frølund Thomsen, Lars Thorbjørn Jensen
Software Mentions: 7
Published: about 5 years ago

10.3390/diagnostics11030558

Characteristic Features of Infrared Thermographic Imaging in Primary Raynaud’s Phenomenon
Cited by: 3
Author(s): Lotte Lindberg, Bent Bruun Kristensen, Jane Frølund Thomsen, Ebbe Eldrup, Lars Thorbjørn Jensen
Software Mentions: 7
Published: over 5 years ago

10.3390/cells10071690

Characterisation of Neurospheres-Derived Cells from Human Olfactory Epithelium
Cited by: 1
Author(s): E. A. Zelenova, Nikolay Kondratyev, Т. В. Лежейко, G. Yu. Tsarapkin, A. I. Kryukov, Alexander E Kishinevsky, A.S. Tovmasyan, Ekaterina Momotyuk, Э. Б. Дашинимаев, В. Е. Голимбет
Software Mentions: 7
Published: almost 5 years ago

10.1186/1471-2164-11-349

Comparison of normalization methods for Illumina BeadChip HumanHT-12 v3
Cited by: 70
Author(s): RM Schmid, Patrick Baum, Carina Ittrich, Katrin Fundel‐Clemens, Wolfgang Huber, Benedikt Brors, Roland Eils, Andreas Weith, Detlev Mennerich, Karsten Quast
Software Mentions: 7
Published: about 16 years ago

10.3390/microorganisms5040068

Linking Compositional and Functional Predictions to Decipher the Biogeochemical Significance in DFAA Turnover of Abundant Bacterioplankton Lineages in the North Sea
Cited by: 16
Author(s): Bernd Wemheuer, Franziska Wemheuer, Dimitri V. Meier, Sara Billerbeck, Helge-Ansgar Giebel, Meinhard Simon, Christoph Scherber, Rolf Daniel
Software Mentions: 7
Published: over 8 years ago

10.3389/fimmu.2021.651475

Novel Insights Into Rheumatoid Arthritis Through Characterization of Concordant Changes in DNA Methylation and Gene Expression in Synovial Biopsies of Patients With Differing Numbers of Swollen Joints
Cited by: 5
Author(s): Andrew Y. Li Yim, Enrico Ferrero, Klio Maratou, Huw D. Lewis, George C. Royal, David F. Tough, Chris Larminie, Marcel M.A.M. Mannens, Peter Henneman, Wouter J. de Jonge, Marleen G H van de Sande, Daniëlle M. Gerlag, Rab K. Prinjha, Paul P. Tak
Software Mentions: 7
Published: about 5 years ago

10.1093/conphys/coz002

Artificial light at night disturbs the activity and energy allocation of the common toad during the breeding period
Cited by: 28
Author(s): Morgane Touzot, Loïc Teulier, Thierry Lengagne, Jean Secondi, Marc Théry, Paul-Antoine Libourel, Ludovic Guillard, Nathalie Mondy
Software Mentions: 7
Published: over 7 years ago

10.1186/s40635-021-00410-x

Validation of a novel system to assess end-expiratory lung volume and alveolar recruitment in an ARDS model
Cited by: 0
Author(s): Laurent Bitker, Nakédia M. F. Carvalho, Sascha Reidt, Christoph Schranz, Dominik Novotni, Maciej Orkisz, Eduardo Davila Serrano, Jean-Pierre Revelly, Jean-Christophe Richard
Software Mentions: 7
Published: almost 5 years ago

10.1186/1471-2105-15-69

MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data
Cited by: 15
Author(s): Gan Zhang, Jianwu Wang, Nathan Salomonis, Jennifer Stowe, Gabriel G. Haddad, Andrew D. McCulloch, Ilkay Altıntaş, Alexander C. Zambon
Software Mentions: 7
Published: over 12 years ago

10.1007/s00330-020-07195-9

Improved differentiation between primary lung cancer and pulmonary metastasis by combining dual-energy CT–derived biomarkers with conventional CT attenuation
Cited by: 19
Author(s): Dominik Deniffel, Andreas Sauter, Alexander A. Fingerle, Ernst J. Rummeny, Marcus R. Makowski, Daniela Pfeiffer
Software Mentions: 7
Published: almost 6 years ago

10.3389/fpls.2018.00029

Population Genetic Structure in Glyphosate-Resistant and -Susceptible Palmer Amaranth (Amaranthus palmeri) Populations Using Genotyping-by-sequencing (GBS)
Cited by: 26
Author(s): Anita Küpper, Harish Manmathan, Darci A. Giacomini, Eric Patterson, William B. McCloskey, Todd A. Gaines
Software Mentions: 7
Published: over 8 years ago

10.1186/s12864-021-07721-z

Characterizing the properties of bisulfite sequencing data: maximizing power and sensitivity to identify between-group differences in DNA methylation
Cited by: 10
Author(s): Dorothea Seiler Vellame, Isabel Castanho, Aisha Dahir, Jonathan Mill, Eilís Hannon
Software Mentions: 7
Published: about 5 years ago

10.1093/conphys/coz076

Early life history responses and phenotypic shifts in a rare endemic plant responding to climate change
Cited by: 5
Author(s): Daniel E. Winkler, Michelle Lin, José Delgadillo, Kenneth James Chapin, Travis E. Huxman
Software Mentions: 7
Published: over 7 years ago

10.3389/fimmu.2019.00488

The Association Between Vitamin D and Multiple Sclerosis Risk: 1,25(OH)2D3 Induces Super-Enhancers Bound by VDR
Cited by: 24
Author(s): Ming Lu, Bennet J McComish, Kathryn P. Burdon, Bruce Taylor, Heinrich Körner
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-019-50260-7

Plasma metabolites associated with homeostatic model assessment of insulin resistance: metabolite-model design and external validation
Cited by: 5
Author(s): Pablo Hernández‐Alonso, Jesús García‐Gavilán, Lucía Camacho-Barcia, Anders Sjödin, Thorsten Hansen, Jo Harrold, Jordi Salas‐Salvadó, Jason C.G. Halford, Sı́lvia Canudas, Mònica Bulló
Software Mentions: 7
Published: almost 7 years ago

10.1093/bioinformatics/btz031

ensembldb: an R package to create and use Ensembl-based annotation resources
Cited by: 76
Author(s): Johannes Michael Rainer, Laurent Gatto, Christian X. Weichenberger
Software Mentions: 7
Published: over 7 years ago

10.3389/fimmu.2021.568729

Evolution and Expression of the Immune System of a Facultatively Anadromous Salmonid
Cited by: 7
Author(s): Thomas J. Colgan, Peter Moran, Louise C. Archer, Robert Wynne, Stephen A. Hutton, Philip McGinnity, Thomas E. Reed
Software Mentions: 7
Published: over 5 years ago

10.1093/gigascience/giab060

ISA API: An open platform for interoperable life science experimental metadata
Cited by: 13
Author(s): David Johnson, Dominique Batista, Keeva Cochrane, Robert P. Davey, Anthony Etuk, Alejandra González-Beltrán, Kenneth Haug, Massimiliano Izzo, Martin Larralde, Thomas N. Lawson, Alice Minotto, Pablo Moreno-Ger, Venkata Chandrasekhar Nainala, Claire O’Donovan, Luca Pireddu, Pierrick Roger, Felix Shaw, Christoph Steinbeck, Ralf Weber, Susanna-Assunta Sansone, Philippe Rocca-Serra
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12859-017-1711-z

GRAPE: a pathway template method to characterize tissue-specific functionality from gene expression profiles
Cited by: 8
Author(s): Michael Klein, David F. Stern, Hongyu Zhao
Software Mentions: 7
Published: about 9 years ago

10.3390/insects12070647

Impact of Temperature on the Immune Interaction between a Parasitoid Wasp and Drosophila Host Species
Cited by: 3
Author(s): Fanny Cavigliasso, Jean‐Luc Gatti, Dominique Colinet, Marylène Poirié
Software Mentions: 7
Published: almost 5 years ago

10.3389/fgene.2020.612037

An Immune Gene-Related Five-lncRNA Signature for to Predict Glioma Prognosis
Cited by: 20
Author(s): Xinzhuang Wang, Ming Gao, Junyi Ye, Qiuyi Jiang, Quan Yang, Cheng Zhang, Shengtao Wang, Jian Zhang, Ligang Wang, Jianing Wu, Hua Zhan, Xu Hou, Dayong Han, Shen Zhao
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-020-73391-8

Biogeographic parallels in thermal tolerance and gene expression variation under temperature stress in a widespread bumble bee
Cited by: 36
Author(s): Meaghan L. Pimsler, Kennan Oyen, James D. Herndon, Jason M. Jackson, James P. Strange, Michael E. Dillon, Jeffrey D. Lozier
Software Mentions: 7
Published: over 5 years ago

10.1098/rsos.160471

Maternal effects and <i>Symbiodinium</i> community composition drive differential patterns in juvenile survival in the coral <i>Acropora tenuis</i>
Cited by: 55
Author(s): Kate M. Quigley, Bette L. Willis, Line K. Bay
Software Mentions: 7
Published: over 9 years ago

10.3389/fpsyg.2021.630751

The Influence of Personality, Resilience, and Alexithymia on Mental Health During COVID-19 Pandemic
Cited by: 70
Author(s): Sofia Adelaide Osimo, Marilena Aiello, Claudio Gentili, Silvio Ionta, Cinzia Cecchetto
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.7810

Visitation of artificial watering points by the red fox (<i>Vulpes vulpes</i>) in semiarid Australia
Cited by: 2
Author(s): David A. Roshier, Johannes Signer, Andrew Carter
Software Mentions: 7
Published: about 5 years ago

10.3758/s13415-019-00726-y

Causal underpinnings of working memory and Stroop interference control: Testing the effects of anodal and cathodal tDCS over the left DLPFC
Cited by: 21
Author(s): Anna Baumert, Nita Buchholz, Axel Zinkernagel, Patrick Clarke, Colin MacLeod, Roman Osinsky, Manfred Schmitt
Software Mentions: 7
Published: about 7 years ago

10.1186/s12970-018-0262-7

Estimation of energy balance and training volume during Army Initial Entry Training
Cited by: 20
Author(s): Jeremy McAdam, Kaitlin McGinnis, Rian Ory, Kaelin C. Young, Andrew D. Frugé, Michael D. Roberts, JoEllen M. Sefton
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pgen.1008855

Estimation of non-null SNP effect size distributions enables the detection of enriched genes underlying complex traits
Cited by: 8
Author(s): Wei Cheng, Sohini Ramachandran, Lorin Crawford
Software Mentions: 7
Published: about 6 years ago

10.3390/insects9040174

Drifting Phenologies Cause Reduced Seasonality of Butterflies in Response to Increasing Temperatures
Cited by: 5
Author(s): Zachariah J. Gezon, Rebekah J. Lindborg, Anne Savage, Jaret C. Daniels
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0234190

Positive attitudes towards feline obesity are strongly associated with ownership of obese cats
Cited by: 2
Author(s): Kendy Tzu-Yun Teng, Paul McGreevy, Jenny‐Ann L.M.L. Toribio, Navneet K. Dhand
Software Mentions: 7
Published: about 6 years ago

10.1002/ece3.5852

Investigating the environmental drivers of deep‐seafloor biodiversity: A case study of peracarid crustacean assemblages in the Northwest Atlantic Ocean
Cited by: 13
Author(s): Oliver S. Ashford, Andrew Kenny, Christopher R.S. Barrio Froján, Tammy Horton, Alex D. Rogers
Software Mentions: 7
Published: over 6 years ago

10.1002/ece3.5617

Meta‐analyzing the likely cross‐species responses to climate change
Cited by: 10
Author(s): Jean C. G. Ortega, Nathalia Ingrid Gomes Machado, José Alexandre Felizola Diniz‐Filho, Thiago F. Rangel, Miguel B. Araújo, Rafael Loyola, Luis Maurício Bini
Software Mentions: 7
Published: almost 7 years ago

10.3390/nu13072471

Use of Different Food Classification Systems to Assess the Association between Ultra-Processed Food Consumption and Cardiometabolic Health in an Elderly Population with Metabolic Syndrome (PREDIMED-Plus Cohort)
Cited by: 38
Author(s): Celia Martinez-Perez, Rodrigo San-Cristóbal, Pilar Guallar-Castillón, Miguel Ángel Martínez‐González, Jordi Salas‐Salvadó, Dolores Corella, Olga Castañer, José Alfredo Martínez Hernández, Ángel M. Alonso‐Gómez, Julia Wärnberǵ, Jesús Vioque, Dora Romaguera, José López‐Miranda, Ramón Estruch, Francisco J. Tinahones, José Lapetra, Lluís Serra-Majem, Aurora Bueno‐Cavanillas, Josep A. Tur, Vicente Martín, Xavier Pintó Sala, José J. Gaforio, Pilar Matía, Josep Vidal, Clotilde Vázquez, Emilio Ros, Maira Bes–Rastrollo, Nancy Babió, José V. Sorlí, Camille Lassale, Beatriz Pérez-Sanz, Jessica Vaquero-Luna, María Julia Ajejas Bazán, María Concepción Barceló-Iglesias, Jadwiga Konieczna, Antonio García Ríos, María Rosa Bernal-López, José Manuel Santos‐Lozano, Estefanía Toledo, Nerea Becerra‐Tomás, Olga Portolés, María Dolores Zomeño, Itziar Abete, Anai Moreno-Rodríguez, Oscar Lecea-Juarez, Stephanie K. Nishi, Júlia Muñoz-Martínez, José M. Ordovás, Lidia Daimiel
Software Mentions: 7
Published: almost 5 years ago

10.1186/s13059-021-02437-5

SCAPTURE: a deep learning-embedded pipeline that captures polyadenylation information from 3′ tag-based RNA-seq of single cells
Cited by: 11
Author(s): Guo-Wei Li, Nan Fang, Guo-Hua Yuan, Chu-Xiao Liu, Xindong Liu, Lingling Chen, Bin Tian, Li Yang
Software Mentions: 7
Published: almost 5 years ago

10.3389/fonc.2020.636549

Construction and Validation of Nomograms Predicting Survival in Triple-Negative Breast Cancer Patients of Childbearing Age
Cited by: 1
Author(s): Xiang Cui, Deba Song, Xiaoxu Li
Software Mentions: 7
Published: over 5 years ago

10.1186/s13321-019-0338-7

Software solutions for evaluation and visualization of laser ablation inductively coupled plasma mass spectrometry imaging (LA-ICP-MSI) data: a short overview
Cited by: 30
Author(s): Ralf Weiskirchen, Sabine Weiskirchen, Philipp Kim, Robert Winkler
Software Mentions: 7
Published: over 7 years ago

10.3389/fgene.2019.00971

Assessing the Impact of Sample Heterogeneity on Transcriptome Analysis of Human Diseases Using MDP Webtool
Cited by: 15
Author(s): André Nicolau Aquime Gonçalves, Melissa Lever, Pedro Russo, Bruno Gomes-Correia, Alysson H. Urbanski, Gabriele Pollara, Mahdad Noursadeghi, Vinicius Maracaja‐Coutinho, Helder I. Nakaya
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0241691

Succinivibrionaceae is dominant family in fecal microbiota of Behçet’s Syndrome patients with uveitis
Cited by: 12
Author(s): Duygu Tecer, Feride Göğüş, Ayşe Kalkancı, Merve Erdoğan, Murat Hasanreisoğlu, Çağrı Ergin, Tarkan Karakan, Ramazan Kozan, Serhat Emre Coban, Kadir Serdar Diker
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0218636

Characterizing the postmortem human bone microbiome from surface-decomposed remains
Cited by: 23
Author(s): Alexandra L. Emmons, Amy Z. Mundorff, Sarah W. Keenan, Jonathan Davoren, Janna M. Andronowski, David Carter, Jennifer M. DeBruyn
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0201830

Exposure to a firefighting overhaul environment without respiratory protection increases immune dysregulation and lung disease risk
Cited by: 14
Author(s): Stephen J. Gainey, Gavin P. Horn, Albert E. Towers, Maci L. Oelschlager, Vincent L. Tir, Jenny Drnevich, Kenneth W. Fent, Stephen Kerber, Denise L. Smith, Gregory G. Freund
Software Mentions: 7
Published: almost 8 years ago

10.7554/eLife.35690

Selective increases in inter-individual variability in response to environmental enrichment in female mice
Cited by: 41
Author(s): Julia Körholz, Sara Zocher, Anna N. Grzyb, Benjamin Morisse, Alexandra Poetzsch, Fanny Ehret, Christopher Schmied, Gerd Kempermann
Software Mentions: 7
Published: over 7 years ago

10.1186/1471-2148-14-61

Introgressive hybridization and latitudinal admixture clines in North Atlantic eels
Cited by: 15
Author(s): Sébastien Wielgoss, Aude Gilabert, Axel Meyer, Thierry Wirth
Software Mentions: 7
Published: over 12 years ago

10.1186/s12859-019-2990-3

Analysis of networks of host proteins in the early time points following HIV transduction
Cited by: 8
Author(s): Éva Csősz, Ferenc Tóth, Mohamed Mahdi, George Tsaprailis, Miklós Emri, József Tözsér
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pone.0093742

Nest Grouping Patterns of Bonobos (Pan paniscus) in Relation to Fruit Availability in a Forest-Savannah Mosaic
Cited by: 90
Author(s): Adeline Serckx, Marie‐Claude Huynen, Jean-François Bastin, Alain Hambuckers, Roseline Beudels-Jamar, Marie Vimond, Emilien Raynaud, Hjalmar S. Kühl
Software Mentions: 7
Published: about 12 years ago

10.1186/s12859-019-2684-x

From trash to treasure: detecting unexpected contamination in unmapped NGS data
Cited by: 42
Author(s): Mara Sangiovanni, Ilaria Granata, Amarinder Singh Thind, Mario Rosario Guarracino
Software Mentions: 7
Published: about 7 years ago

10.3390/ijerph18158115

Longitudinal Associations of Marital, Parenting, and Employment Transitions with Weight Gain in a Multi-Ethnic Asian Population Aged 21 Years and Above
Cited by: 5
Author(s): Clare Whitton, Yvonne Hui Min Wong, Rob M. van Dam
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0253779

Altered states phenomena induced by visual flicker light stimulation
Cited by: 7
Author(s): Marie Therese Bartossek, Johanna Kemmerer, Timo Torsten Schmidt
Software Mentions: 7
Published: almost 5 years ago

10.1002/ece3.4052

Phylogenetic signal in tooth wear dietary niche proxies
Cited by: 23
Author(s): Danielle Fraser, Ryan J. Haupt, W. Andrew Barr
Software Mentions: 7
Published: about 8 years ago

10.1038/s41597-021-01033-3

The “Narratives” fMRI dataset for evaluating models of naturalistic language comprehension
Cited by: 38
Author(s): Samuel A. Nastase, Yun Fei Liu, Hanna Hillman, Asieh Zadbood, Liat Hasenfratz, Neggin Keshavarzian, Janice Chen, Christopher J. Honey, Yehezkel Yeshurun, Mor Regev, Mai Nguyen, Claire H.C. Chang, Christopher Baldassano, Olga Lositsky, Erez Simony, Michael Chow, Yuan Chang Leong, Paula P. Brooks, Emily Micciche, Gina Choe, Ariel Goldstein, Tamara Vanderwal, Yaroslav Halchenko, Kenneth A. Norman, Uri Hasson
Software Mentions: 7
Published: almost 5 years ago

10.3389/fpls.2021.693739

Comparative Metabolomics of Fruits and Leaves in a Hyperdiverse Lineage Suggests Fruits Are a Key Incubator of Phytochemical Diversification
Cited by: 11
Author(s): Gerald Schneider, Diego Salazar, Sherry B. Hildreth, Richard Helm, Susan R. Whitehead
Software Mentions: 7
Published: almost 5 years ago

10.1111/cns.13382

RGS16 promotes glioma progression and serves as a prognostic factor
Cited by: 20
Author(s): Ruoyu Huang, Guanzhang Li, Zheng Zhao, Fan Zeng, Kenan Zhang, Yanwei Liu, Kuanyu Wang, Huimin Hu
Software Mentions: 7
Published: about 6 years ago