pypi: stats | Projects | Ecosyste.ms: Papers

10.1186/s12864-020-6653-6

Novel approach in whole genome mining and transcriptome analysis reveal conserved RiPPs in Trichoderma spp
Cited by: 14
Author(s): Gabriel A. Vignolle, Robert L. Mach, Astrid R. Mach-Aigner, Christian Derntl
Software Mentions: 8
Published: over 6 years ago

10.3389/fpls.2021.616975

Heterotic Patterns of Temperate and Tropical Maize by Ear Photometry
Cited by: 1
Author(s): Seth Tolley, Amritpal Singh, Mitchell R. Tuinstra
Software Mentions: 8
Published: over 5 years ago

10.1002/acn3.51441

Gut microbiome is associated with multiple sclerosis activity in children
Cited by: 18
Author(s): Mary Horton, Kathryn McCauley, Douglas Fadrosh, Kei E. Fujimura, Jennifer Graves, Jayne Ness, Yolanda Wheeler, Mark Gorman, Leslie Benson, Bianca Weinstock‐Guttman, Amy Waldman, Moses Rodriguez, Jan‐Mendelt Tillema, Lauren Krupp, Anita Belman, Soe Mar, Mary Rensel, Tanuja Chitnis, T. Charles Casper, John Rose, Janace Hart, Xiaorong Shao, Helen Tremlett, Susan V. Lynch, Lisa F. Barcellos, Emmanuelle Waubant
Software Mentions: 8
Published: about 5 years ago

10.18632/oncotarget.16961

RNA sequencing-based cell proliferation analysis across 19 cancers identifies a subset of proliferation-informative cancers with a common survival signature
Cited by: 24
Author(s): Ryne C. Ramaker, Brittany N. Lasseigne, Andrew A. Hardigan, Laura Palacio, David S. Gunther, R Myers, Sara J. Cooper
Software Mentions: 8
Published: over 9 years ago

10.3389/fonc.2020.00832

Diagnostic Value of Combinatorial Markers in Colorectal Carcinoma
Cited by: 7
Author(s): Veronika Voronova, Petr Glybochko, Andrey Svistunov, В В Фомин, Philipp Kopylov, Peter Tzarkov, А. В. Егоров, E. P. Gitel, А. А. Рагимов, Alexander Boroda, Elena Poddubskaya, Marina Sekacheva
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0183264

The transcriptional profiling of human in vivo-generated plasma cells identifies selective imbalances in monoclonal gammopathies
Cited by: 12
Author(s): Luis M. Valor, Beatriz Rodrı́guez-Bayona, Ana Ramos-Amaya, José A. Brieva, Antonio Campos‐Caro
Software Mentions: 8
Published: about 9 years ago

10.1371/journal.pone.0234537

Prairie plants harbor distinct and beneficial root-endophytic bacterial communities
Cited by: 0
Author(s): Boahemaa Adu-Oppong, Scott A. Mangan, Cláudia Stein, Christopher P. Catano, Jonathan A. Myers, Gautam Dantas
Software Mentions: 8
Published: over 6 years ago

10.1155/2021/9048375

Nomograms for Predicting Prognosis of Primary Mediastinal Seminoma: A Population-Based Study
Cited by: 2
Author(s): Weining Huang, Jingwen Luo, Xianghong Zhou, Ying Zhao, Tao Zhang, Xuelei Ma
Software Mentions: 8
Published: over 5 years ago

10.3389/fonc.2019.01243

Identification of Subtype-Specific Three-Gene Signature for Prognostic Prediction in Diffuse Type Gastric Cancer
Cited by: 12
Author(s): Bowen Bao, Chunlei Zheng, Bowen Yang, Yue Jin, Kezuo Hou, Zhi Li, Xueying Zheng, Shitong Yu, Xiaojie Zhang, Yibo Fan, Xiujuan Qu, Yunpeng Liu, Xiaofang Che
Software Mentions: 8
Published: almost 7 years ago

10.1371/journal.pone.0206077

Demographic characteristics of an avian predator, Louisiana Waterthrush (Parkesia motacilla), in response to its aquatic prey in a Central Appalachian USA watershed impacted by shale gas development
Cited by: 6
Author(s): Mack W. Frantz, Petra Bohall Wood, George T. Merovich
Software Mentions: 8
Published: almost 8 years ago

10.1038/s41598-019-50858-x

Landscape determinants of density of blacklegged ticks, vectors of Lyme disease, at the northern edge of their distribution in Canada
Cited by: 19
Author(s): Benoit Talbot, Andreea Slatculescu, Charles Thickstun, Jules K. Koffi, Patrick A. Leighton, Roman McKay, Manisha A. Kulkarni
Software Mentions: 8
Published: almost 7 years ago

10.1038/s41396-019-0383-2

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots
Cited by: 596
Author(s): Samiran Banerjee, Florian Walder, Lucie Büchi, Marion Meyer, Alain Held, Andreas Gattinger, Thomas Keller, Raphaël Charles, Marcel G. A. van der Heijden
Software Mentions: 8
Published: over 7 years ago

10.1038/s41598-019-38483-0

Metabotyping as a Stopover in Genome-to-Phenome Mapping
Cited by: 31
Author(s): Pubudu Handakumbura, Bryan Stanfill, Albert Rivas‐Ubach, Dan Fortin, John P. Vogel, Christer Jansson
Software Mentions: 8
Published: over 7 years ago

10.1371/journal.pone.0220926

Gut microbiome shifts with urbanization and potentially facilitates a zoonotic pathogen in a wading bird
Cited by: 50
Author(s): Maureen H. Murray, Emily W. Lankau, Anjelika D. Kidd, Catharine N. Welch, Taylor Ellison, Henry Adams, Erin K. Lipp, Sonia M. Hernández
Software Mentions: 8
Published: over 6 years ago

10.3390/ijms21103591

Examining Short-Term Responses to a Long-Term Problem: RNA-Seq Analyses of Iron Deficiency Chlorosis Tolerant Soybean
Cited by: 8
Author(s): Adrienne N. Moran Lauter, Lindsay Rutter, Dianne Cook, Jamie A. O’Rourke, Michelle A. Graham
Software Mentions: 8
Published: over 6 years ago

10.18632/oncotarget.6793

Annexin A1 sustains tumor metabolism and cellular proliferation upon stable loss of HIF1A
Cited by: 12
Author(s): Nadine Rohwer, Fabian Bindel, Christina Grimm, Suling J. Lin, Jessica Wappler, Bertram Klinger, Nils Blüthgen, Ilona Du Bois, Bernd Schmeck, Hans Lehrach, Marjo de Graauw, Emanuel Gonçalvès, Julio Sáez-Rodríguez, Patrick Tan, Heike Grabsch, Alessandro Prigione, Stefan Kempa, Thorsten Cramer
Software Mentions: 8
Published: almost 11 years ago

10.3389/fgene.2021.702695

Identification and Elucidation of the Protective isomiRs in Lung Cancer Patient Prognosis
Cited by: 1
Author(s): Fu-Mei Hsieh, Su-Ting Lai, Ming-Fong Wu, Chen-Ching Lin
Software Mentions: 7
Published: about 5 years ago

10.1186/1471-2164-14-445

The Saccharomyces cerevisiae transcriptome as a mirror of phytochemical variation in complex extracts of Equisetum arvense from America, China, Europe and India
Cited by: 20
Author(s): R. Kimberley Cook, James R. Hennell, Samiuela Lee, Cheang Khoo, Maria Carles, Vincent J. Higgins, Suresh Govindaraghavan, Nikolaus J. Sucher
Software Mentions: 7
Published: over 13 years ago

10.1186/s12864-019-6047-9

Genome-wide effects of social status on DNA methylation in the brain of a cichlid fish, Astatotilapia burtoni
Cited by: 9
Author(s): Austin T. Hilliard, Dan Xie, Zhihai Ma, M Snyder, Russell D. Fernald
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.pone.0229146

Vegetation changes in temperate ombrotrophic peatlands over a 35 year period
Cited by: 20
Author(s): Nicolas Pinceloup, Monique Poulin, Marie‐Hélène Brice, Stéphanie Pellerin
Software Mentions: 7
Published: over 6 years ago

10.3389/fcell.2021.622198

Succinylation Regulators Promote Clear Cell Renal Cell Carcinoma by Immune Regulation and RNA N6-Methyladenosine Methylation
Cited by: 11
Author(s): Wenqing Lü, Xiaofang Che, Xiujuan Qu, Chunlei Zheng, Xianghong Yang, Bowen Bao, Zhi Li, Duo Wang, Yue Jin, Yizhe Wang, Jiawen Xiao, Jianfei Qi, Yunpeng Liu
Software Mentions: 7
Published: over 5 years ago

10.1128/mSphere.00806-20

Raman Spectroscopy-Based Measurements of Single-Cell Phenotypic Diversity in Microbial Populations
Cited by: 15
Author(s): Cristina García‐Timermans, Ruben Props, Boris Zacchetti, Myrsini Sakarika, Frank Delvigne, Nico Boon
Software Mentions: 7
Published: almost 6 years ago

10.1128/mSphere.00056-20

Emergence of a Novel Salmonella enterica Serotype Reading Clonal Group Is Linked to Its Expansion in Commercial Turkey Production, Resulting in Unanticipated Human Illness in North America
Cited by: 19
Author(s): Elizabeth A. Miller, Ehud Elnekave, Cristian Flores-Figueroa, Abigail Johnson, Ashley Kearney, Jeannette Muñoz-Aguayo, Kaitlin A. Tagg, Lorelee Tschetter, Bonnie Weber, Céline Nadon, Dave Boxrud, Randall S. Singer, Jason P. Folster, Timothy J. Johnson
Software Mentions: 7
Published: over 6 years ago

10.1186/s12864-021-07735-7

Non-coding RNAs in the interaction between rice and Meloidogyne graminicola
Cited by: 11
Author(s): Bruno Verstraeten, Mohammad Reza Atighi, Virginia Ruiz‐Ferrer, Carolina Escobar, Tim De Meyer, Tina Kyndt
Software Mentions: 7
Published: about 5 years ago

10.12688/f1000research.17145.2

False positives in trans-eQTL and co-expression analyses arising from RNA-sequencing alignment errors
Cited by: 35
Author(s): Ashis Saha, Alexis Battle
Software Mentions: 7
Published: over 7 years ago

10.1128/mBio.03601-20

Ketogenic Diets Induced Glucose Intolerance and Lipid Accumulation in Mice with Alterations in Gut Microbiota and Metabolites
Cited by: 15
Author(s): Yue Li, Yifan Yang, Jing Zhang, Tianyi Jiang, Ziyi Zhang, Zhiyi Wang, Mengxue Gong, Liping Zhao, Chenhong Zhang
Software Mentions: 7
Published: over 5 years ago

10.1186/s12864-018-4689-7

Gene copy number variation in natural populations of Plasmodium falciparum in Eastern Africa
Cited by: 12
Author(s): Joan Simam, Martin K. Rono, Joyce M. Ngoi, Mary Nyonda, Sachel Mok, Kevin Marsh, Zbynek Bozdech, Margaret J. Mackinnon
Software Mentions: 7
Published: over 8 years ago

10.3389/fvets.2019.00499

Developing Diagnostic Frameworks in Veterinary Behavioral Medicine: Disambiguating Separation Related Problems in Dogs
Cited by: 25
Author(s): Luciana Santos de Assis, Raquel Matos, Thomas W. Pike, Ohp Burman, Daniel S. Mills
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-021-96967-4

Parasites and diet as main drivers of the Malagasy gut microbiome richness and function
Cited by: 3
Author(s): Stanislas Mondot, Philippe Poirier, Ahmed Abou-Bacar, Valentin Greigert, Julie Brunet, Céline Nourrisson, Milijaona Randrianarivelojosia, Jean-Louis Razafindrakoto, Eugène Morel, Rivo Rakotomalala, Marion Leclerc, Karine Le Roux, Céline Monot, Patricia Lepage, Ermanno Candolfi
Software Mentions: 7
Published: about 5 years ago

10.1007/s10021-018-0275-8

Vertical Redistribution of Soil Organic Carbon Pools After Twenty Years of Nitrogen Addition in Two Temperate Coniferous Forests
Cited by: 21
Author(s): Stefan J. Forstner, Viktoria Wechselberger, Stefanie Müller, Katharina M. Keibinger, Eugenio Díaz‐Pinés, Wolfgang Wanek, Patrick Scheppi, Frank Hagedorn, Per Gundersen, Michael Tatzber, Martin H. Gerzabek, Sophie Zechmeister‐Boltenstern
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pone.0179956

Author contributions to ecological publications: What does it mean to be an author in modern ecological research?
Cited by: 17
Author(s): John M. Logan, Sarah B. Bean, Alan A. Myers
Software Mentions: 7
Published: over 9 years ago

10.1186/1471-2105-15-132

Investigating perturbed pathway modules from gene expression data via structural equation models
Cited by: 19
Author(s): Daniele Pepe, Mario Grassi
Software Mentions: 7
Published: over 12 years ago

10.3390/molecules25153402

The Mineral Profile of Polish Beers by Fast Sequential Multielement HR CS FAAS Analysis and Its Correlation with Total Phenolic Content and Antioxidant Activity by Chemometric Methods
Cited by: 8
Author(s): Elżbieta Zambrzycka-Szelewa, Edyta Nalewajko-Sieliwoniuk, Mariusz Zaremba, Andrzej Bajguz, Beata Godlewska‐Żyłkiewicz
Software Mentions: 7
Published: about 6 years ago

10.1111/mec.15160

Impacts of long‐term elevated atmospheric CO2 concentrations on communities of arbuscular mycorrhizal fungi
Cited by: 19
Author(s): Irena Maček, Dave R. Clark, Nataša Šibanc, Gerald M. Moser, Dominik Vodnik, Christoph Müller, Alex J. Dumbrell
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0243672

Characterisation and chemometric evaluation of 17 elements in ten seaweed species from Greenland
Cited by: 11
Author(s): Katharina Kreissig, Lisbeth Truelstrup Hansen, Pernille Erland Jensen, Susse Wegeberg, Ole Geertz‐Hansen, Jens Jørgen Sloth
Software Mentions: 7
Published: over 5 years ago

10.1186/s12862-019-1533-x

Hooked on you: shape of attachment structures in cymothoid isopods reflects parasitic strategy
Cited by: 14
Author(s): Charles Baillie, Rachel L. Welicky, Kerry A. Hadfield, Stefano Mariani, Robin M. D. Beck
Software Mentions: 7
Published: almost 7 years ago

10.1002/ece3.3261

Evolutionarily significant units of the critically endangered leaf frogPithecopus ayeaye(Anura, Phyllomedusidae) are not effectively preserved by the Brazilian protected areas network
Cited by: 16
Author(s): Rafael Félix de Magalhães, Priscila Lemes, Arley Camargo, Ubirajara Oliveira, Reuber Albuquerque Brandão, Hans Thomassen, Paulo Christiano de Anchieta Garcia, Felipe Sá Fortes Leite, Fabrício R. Santos
Software Mentions: 7
Published: about 9 years ago

10.1002/ece3.6167

Does breeding season variation affect evolution of a sexual signaling trait in a tropical lizard clade?
Cited by: 4
Author(s): Levi N. Gray, Anthony J. Barley, David M. Hillis, Carlos J. Pavón‐Vázquez, Steven Poe, Brittney A White
Software Mentions: 7
Published: over 6 years ago

10.1093/molbev/msaa122

The Architecture of Metabolism Maximizes Biosynthetic Diversity in the Largest Class of Fungi
Cited by: 29
Author(s): Emile Gluck‐Thaler, Sajeet Haridas, Manfred Binder, Igor V. Grigoriev, Pedro W. Crous, Joseph W. Spatafora, Kathryn E. Bushley, Jason C. Slot
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0048365

Molecular and Immunological Characterization of Gluten Proteins Isolated from Oat Cultivars That Differ in Toxicity for Celiac Disease
Cited by: 67
Author(s): Ana Real, Isabel Comino, Laura de Lorenzo, Francisco Merchán, Javier Gil-Humanes, María J. Giménez, Miguel Ángel López-Casado, Ma Isabel Torres, Ángel Cebolla, Carolina Sousa, Francisco Barro, Fernando Pistón
Software Mentions: 7
Published: almost 14 years ago

10.1186/s13040-018-0166-8

Gene set analysis methods: a systematic comparison
Cited by: 57
Author(s): Ravi Mathur, Daniel M. Rotroff, Ma Jun, Ali Shojaie, Alison A. Motsinger‐Reif
Software Mentions: 7
Published: over 8 years ago

10.3390/medicina55060269

A Robust Approach for Identification of Cancer Biomarkers and Candidate Drugs
Cited by: 10
Author(s): Shahjaman, Rezanur Rahman, S. M. Shahinul Islam, Md. Nurul Haque Mollah
Software Mentions: 7
Published: over 7 years ago

10.1128/AEM.01715-20

Risk Factors Associated with Carbapenemase-Producing Enterobacterales (CPE) Positivity in the Hospital Wastewater Environment
Cited by: 9
Author(s): Stacy C. Park, Hardik I. Parikh, Kasi Vegesana, Nicole Stoesser, Katie E. Barry, Shireen Meher Kotay, Sarah Dudley, Timothy E. A. Peto, Derrick W. Crook, A. Sarah Walker, Amy J Mathers
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-019-39669-2

Parallel colonization of subalpine habitats in the central European mountains by Primula elatior
Cited by: 13
Author(s): Veronika Konečná, Michael Nowak, Filip Kolář
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-017-13397-x

The effect of insecticide synergist treatment on genome-wide gene expression in a polyphagous pest
Cited by: 28
Author(s): Simon Snoeck, Robert Greenhalgh, Luc Tirry, Richard M. Clark, Thomas Van Leeuwen, Wannes Dermauw
Software Mentions: 7
Published: almost 9 years ago

10.1371/journal.pone.0128391

Optimizing the Protection of Cattle against Escherichia coli O157:H7 Colonization through Immunization with Different Combinations of H7 Flagellin, Tir, Intimin-531 or EspA
Cited by: 27
Author(s): Tom N. McNeilly, Mairi C. Mitchell, Alexander Corbishley, Mintu Nath, Hannah Simmonds, Sean P. McAteer, Aditya Mahajan, J. C. Low, David George Emslie Smith, John F. Huntley, David L. Gally
Software Mentions: 7
Published: over 11 years ago

10.1038/s41598-017-13252-z

Effects of vessel traffic and underwater noise on the movement, behaviour and vocalisations of bottlenose dolphins in an urbanised estuary
Cited by: 52
Author(s): Sarah A. Marley, Chandra Salgado Kent, Christine Erbe, Iain Parnum
Software Mentions: 7
Published: almost 9 years ago

10.1038/srep22164

Bacterial diversity in saliva and oral health-related conditions: the Hisayama Study
Cited by: 201
Author(s): Toru Takeshita, Shinya Kageyama, Michiko Furuta, Hideyuki Tsuboi, Kenji Takeuchi, Yukie Shibata, Yoshihiro Shimazaki, Sumio Akifusa, Toshiharu Ninomiya, Yutaka Kiyohara, Yoshihisa Yamashita
Software Mentions: 7
Published: over 10 years ago

10.1038/srep29532

Delineation of autoantibody repertoire through differential proteogenomics in hepatitis C virus-induced cryoglobulinemia
Cited by: 12
Author(s): Masato Ogishi, Hiroshi Yotsuyanagi, Kyoji Moriya, Kazuhiko Koike
Software Mentions: 7
Published: about 10 years ago

10.3390/microorganisms8101592

Gut Microbiome in Children from Indigenous and Urban Communities in México: Different Subsistence Models, Different Microbiomes
Cited by: 12
Author(s): Andrés Sánchez-Quinto, Daniel Cerqueda‐García, Luisa I. Falcón, Osiris Gaona, Santiago Martínez-Correa, Javier Nieto, Isaac González‐Santoyo
Software Mentions: 7
Published: almost 6 years ago

10.3390/ani10020242

Applicability of an Unmedicated Feeding Program Aimed to Reduce the Use of Antimicrobials in Nursery Piglets: Impact on Performance and Fecal Microbiota
Cited by: 2
Author(s): Paola López-Colom, Jordi Estellé, Jordi Bonet, Julià Coma, S. M. Martín‐Orúe
Software Mentions: 7
Published: over 6 years ago

10.1016/j.celrep.2019.12.057

Cohesin Disrupts Polycomb-Dependent Chromosome Interactions in Embryonic Stem Cells
Cited by: 118
Author(s): James Rhodes, Angelika Feldmann, Benjamín Hernández-Rodríguez, Noèlia Díaz, Jill M. Brown, Nadezda A. Fursova, Neil P. Blackledge, Praveen Prathapan, Paula Dobrinić, Miles K. Huseyin, Aleksander Szczurek, Kai Kruse, K Nasmyth, Veronica J. Buckle, Juan M. Vaquerizas, Robert J. Klose
Software Mentions: 7
Published: almost 7 years ago

10.3390/brainsci11020231

Infant Eye Gaze While Viewing Dynamic Faces
Cited by: 5
Author(s): Lisa M. Oakes, Michaela C. DeBolt, Aaron G. Beckner, Annika T. Voss, Lisa Cantrell
Software Mentions: 7
Published: over 5 years ago

10.3390/microorganisms8101528

Metabolic Response of Faecalibacterium prausnitzii to Cell-Free Supernatants from Lactic Acid Bacteria
Cited by: 14
Author(s): Mathilde Lebas, Peggy Garault, Daniel Carrillo, Francisco M. Codoñer, Muriel Derrien
Software Mentions: 7
Published: about 6 years ago

10.1038/s41420-021-00451-x

A novel defined pyroptosis-related gene signature for predicting the prognosis of ovarian cancer
Cited by: 256
Author(s): Ying Yang, Qinjin Dai, Hongbo Qi
Software Mentions: 7
Published: over 5 years ago

10.1098/rsos.210172

Assessing urinary odours across the oestrous cycle in a mouse model using portable and benchtop gas chromatography-mass spectrometry
Cited by: 4
Author(s): Jia Tang, Alice C. Poirier, Gwen Duytschaever, Laís Alves Antonio Moreira, Omer Nevo, Amanda D. Melin
Software Mentions: 7
Published: about 5 years ago

10.1186/s12870-020-02808-3

Integrated Transcriptomic and Metabolomic analysis reveals a transcriptional regulation network for the biosynthesis of carotenoids and flavonoids in ‘Cara cara’ navel Orange
Cited by: 18
Author(s): Haipeng Zhang, Jiajing Chen, Zhaoxin Peng, Meiyan Shi, Xiao Liu, Wen Huang, Youwu Jiang, Yunjiang Cheng, Juan Xu, Hongyan Zhang
Software Mentions: 7
Published: over 5 years ago

10.1186/s12870-016-0754-z

Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies
Cited by: 72
Author(s): Stéphane Nicolas, Jean‐Pierre Péros, Thierry Lacombe, Amandine Launay, Marie‐Christine Le Paslier, Aurélie Berard, Brigitte Mangin, Sophie Valière, Frédéric Martins, Loïc Le Cunff, Valérie Laucou, Roberto Baciliéri, Alexis Dereeper, Philippe Chatelet, Patrice This, Agnès Doligez
Software Mentions: 7
Published: over 10 years ago

10.1186/s40168-017-0302-6

Influence of the pneumococcal conjugate vaccines on the temporal variation of pneumococcal carriage and the nasal microbiota in healthy infants: a longitudinal analysis of a case–control study
Cited by: 27
Author(s): Moana Mika, Josua Maurer, Insa Korten, Aurélie Allemann, Suzanne Aebi, Silvio D. Brugger, Weihong Qi, Urs Frey, Philipp Latzin, Markus Hilty
Software Mentions: 7
Published: about 9 years ago

10.1186/s13148-019-0651-z

Exploring targets of TET2-mediated methylation reprogramming as potential discriminators of prostate cancer progression
Cited by: 18
Author(s): Shivani Kamdar, Ruth Isserlin, Theodorus van der Kwast, Alexandre R. Zlotta, Gary D. Bader, Neil Fleshner, Bharati Bapat
Software Mentions: 7
Published: over 7 years ago

10.18632/aging.203017

Identification of key transcriptome biomarkers based on a vital gene module associated with pathological changes in Alzheimer’s disease
Cited by: 11
Author(s): Tong Zhang, Yang Shen, Yiqing Guo, Junyan Yao
Software Mentions: 7
Published: over 5 years ago

10.1186/s13059-020-01992-7

TADsplimer reveals splits and mergers of topologically associating domains for epigenetic regulation of transcription
Cited by: 5
Author(s): Guangyu Wang, Qingshu Meng, Bo Xia, Shuo Zhang, Jie Lv, Dongyu Zhao, Yanqiang Li, Xin Wang, Lili Zhang, John P. Cooke, Qi Cao, Kaifu Chen
Software Mentions: 7
Published: over 6 years ago

10.1002/brb3.2043

Hungarian validation of the Buss–Perry Aggression Questionnaire—Is the short form more adequate?
Cited by: 6
Author(s): Szabolcs Zimonyi, Krisztián Kasos, Zsuzsa Halmai, Luca Csirmaz, Helga Stadler, Sándor Rózsa, Anna Székely, Eszter Kótyuk
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-018-21197-0

Effects of timber harvesting on the genetic potential for carbon and nitrogen cycling in five North American forest ecozones
Cited by: 14
Author(s): Erick Cardenas, Luis H. Orellana, Konstantinos T. Konstantinidis, William W. Mohn
Software Mentions: 7
Published: over 8 years ago

10.1186/s12874-019-0681-4

Machine learning in medicine: a practical introduction
Cited by: 526
Author(s): Jenni A. M. Sidey-Gibbons, Chris Sidey‐Gibbons
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0253779

Altered states phenomena induced by visual flicker light stimulation
Cited by: 7
Author(s): Marie Therese Bartossek, Johanna Kemmerer, Timo Torsten Schmidt
Software Mentions: 7
Published: over 5 years ago

10.1186/s13148-018-0510-3

Multifactorial analysis of the stochastic epigenetic variability in cord blood confirmed an impact of common behavioral and environmental factors but not of in vitro conception
Cited by: 25
Author(s): Davide Gentilini, Edgardo Somigliana, Luca Pagliardini, Elisa Rabellotti, Paolo Garagnani, Luisa Bernardinelli, Enrico Papaleo, Massimo Candiani, Anna Maria Di Blasio, Paola Viganò
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pone.0167265

Evidence of Facilitation Cascade Processes as Drivers of Successional Patterns of Ecosystem Engineers at the Upper Altitudinal Limit of the Dry Puna
Cited by: 13
Author(s): Luca Malatesta, Federico Maria Tardella, Karina Piermarteri, Andrea Catorci
Software Mentions: 7
Published: almost 10 years ago

10.3389/fnsys.2021.692152

Age-Related Variations in Regional White Matter Volumetry and Microstructure During the Post-adolescence Period: A Cross-Sectional Study of a Cohort of 1,713 University Students
Cited by: 4
Author(s): Ami Tsuchida, Alexandre Laurent, Fabrice Crivello, Laurent Petit, Antonietta Pepe, Naka Beguedou, Stéphanie Debette, Christophe Tzourio, Bernard Mazoyer
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pgen.1004900

An Intracellular Transcriptomic Atlas of the Giant Coenocyte Caulerpa taxifolia
Cited by: 41
Author(s): Aashish Ranjan, Brad T. Townsley, Yasunori Ichihashi, Neelima Sinha, Daniel H. Chitwood
Software Mentions: 7
Published: over 11 years ago

10.1371/journal.pone.0076051

Alterations in miRNA Levels in the Dentate Gyrus in Epileptic Rats
Cited by: 79
Author(s): Anna Bot, Konrad J. Dębski, Katarzyna Łukasiuk
Software Mentions: 7
Published: almost 13 years ago

10.3389/fpsyg.2021.630751

The Influence of Personality, Resilience, and Alexithymia on Mental Health During COVID-19 Pandemic
Cited by: 70
Author(s): Sofia Adelaide Osimo, Marilena Aiello, Claudio Gentili, Silvio Ionta, Cinzia Cecchetto
Software Mentions: 7
Published: over 5 years ago

10.3389/fpsyg.2018.00353

Brazil-Portugal Transcultural Adaptation of the UWES-9: Internal Consistency, Dimensionality, and Measurement Invariance
Cited by: 21
Author(s): Jorge Sinval, Sônia Regina Pasian, Cristina Queirós, João Marôco
Software Mentions: 7
Published: over 8 years ago

10.1155/2020/8850199

Forecasting COVID-19 Cases Using Alpha-Sutte Indicator: A Comparison with Autoregressive Integrated Moving Average (ARIMA) Method
Cited by: 5
Author(s): A. M. C. H. Attanayake, S. S. N. Perera
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12983-019-0309-x

Mining morphometrics and age from past survey photographs
Cited by: 3
Author(s): Caitlin Black, Hannah S. Mumby, Michelle Henley
Software Mentions: 7
Published: over 7 years ago

10.3390/biom11060796

Lower Gene Expression of Angiotensin Converting Enzyme 2 Receptor in Lung Tissues of Smokers With COVID-19Pneumonia
Cited by: 2
Author(s): Francesca Lunardi, Francesco Fortarezza, Luca Vedovelli, Federica Pezzuto, Annalisa Boscolo, Marco Rossato, Roberto Vettor, Anna María Cattelan, Claudia Del Vecchio, Andrea Crisanti, Paolo Navalesi, Darío Gregori, Fiorella Calabrese
Software Mentions: 7
Published: over 5 years ago

10.1186/s12967-021-02720-w

Development and validation of a prognostic COVID-19 severity assessment (COSA) score and machine learning models for patient triage at a tertiary hospital
Cited by: 38
Author(s): Verena Schöning, Evangelia Liakoni, Christine Baumgartner, Aristomenis K. Exadaktylos, Wolf E. Hautz, Andrew Atkinson, Felix Hammann
Software Mentions: 7
Published: over 5 years ago

10.3390/jpm11060484

A System Pharmacology Multi-Omics Approach toward Uncontrolled Pediatric Asthma
Cited by: 11
Author(s): Mahmoud I. Abdel‐Aziz, Anne H. Neerincx, Susanne Vijverberg, Simone Hashimoto, Paul Brinkman, Mario Gorenjak, Antoaneta A. Toncheva, Susanne Harner, Susanne Brandstetter, Christine Wolff, Javier Pérez-García, Anna M. Hedman, Catarina Almqvist, Paula Corcuera, Javier Korta‐Murua, Olaia Sardón-Prado, Maria Pino‐Yanes, Uroš Potočnik, Michael Kabesch, Aletta D. Kraneveld, Anke‐Hilse Maitland‐van der Zee
Software Mentions: 7
Published: over 5 years ago

10.1186/s12859-015-0830-7

DHOEM: a statistical simulation software for simulating new markers in real SNP marker data
Cited by: 0
Author(s): Laval Jacquin, Tuong-Vi Cao, Cécile Grenier, Nourollah Ahmadi
Software Mentions: 7
Published: almost 11 years ago

10.3390/jpm11060496

Exploring the Metabolic Heterogeneity of Cancers: A Benchmark Study of Context-Specific Models
Cited by: 10
Author(s): Mahdi Jalili, Martin Scharm, Olaf Wolkenhauer, Mehdi Damaghi, Ali Salehzadeh‐Yazdi
Software Mentions: 7
Published: over 5 years ago

10.3390/jpm11060582

Body Mass Index and Birth Weight Improve Polygenic Risk Score for Type 2 Diabetes
Cited by: 11
Author(s): Avigail Moldovan, Yedael Y. Waldman, Nadav Brandes, Michal Linial
Software Mentions: 7
Published: over 5 years ago

10.1186/s12859-020-03945-0

mixIndependR: a R package for statistical independence testing of loci in database of multi-locus genotypes
Cited by: 1
Author(s): Bing Song, August E. Woerner, John V. Planz
Software Mentions: 7
Published: over 5 years ago

10.1186/s12864-019-6162-7

Transcriptome analysis of the differential effect of the NADPH oxidase gene RbohB in Phaseolus vulgaris roots following Rhizobium tropici and Rhizophagus irregularis inoculation
Cited by: 11
Author(s): Citlali Fonseca-García, Alejandra E. Zayas, Jesús Montiel, Noreide Nava, Federico Sánchez, Carmen Quinto
Software Mentions: 7
Published: almost 7 years ago

10.3389/fpls.2021.627573

Do Invasive Earthworms Affect the Functional Traits of Native Plants?
Cited by: 4
Author(s): Lise Thouvenot, Olga Ferlian, Rémy Beugnon, Tom Künne, Alfred Lochner, Madhav P. Thakur, Manfred Türke, Nico Eisenhauer
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-019-43860-w

Individual differences in working memory capacity and cue-guided behavior in humans
Cited by: 25
Author(s): Sara Garofalo, Simone Battaglia, Giuseppe di Pellegrino
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0182212

Monitoring of Schmallenberg virus in Spanish wild artiodactyls, 2006–2015
Cited by: 16
Author(s): Ignacio García‐Bocanegra, David Cano‐Terriza, Gema Vidal, Rosa Rosell, Jorge Paniagua, Saúl Jiménez-Ruíz, Carlos Expósito, Antonio Rivero‐Juárez, Antonio Arenas, Joan Pujols
Software Mentions: 7
Published: about 9 years ago

10.3389/fpls.2019.01481

Understanding the Genetic Basis of Spike Fertility to Improve Grain Number, Harvest Index, and Grain Yield in Wheat Under High Temperature Stress Environments
Cited by: 33
Author(s): Sumit Pradhan, Ali Babar, Kelly R. Robbins, Guihua Bai, Richard E. Mason, Jahangir Khan, Dipendra Shahi, Muhsin Avci, Jia Guo, Mohammad Maksud Hossain, Madhav Bhatta, Maryati Mohamed, Senthold Asseng, Paul St. Amand, Salvador A. Gezan, Byung‐Kee Baik, Ann R. Blount, Amy Bernardo
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pone.0238405

Persistent El Niño driven shifts in marine cyanobacteria populations
Cited by: 7
Author(s): Alyse A. Larkin, Allison R. Moreno, Adam Fagan, Alyssa Fowlds, Alani Ruiz, Adam C. Martiny
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0210783

Development of a behavioural welfare assessment tool for routine use with captive elephants
Cited by: 39
Author(s): Lisa Yon, Ellen Williams, Naomi D. Harvey, Lucy Asher
Software Mentions: 7
Published: over 7 years ago

10.3390/v13040550

Spatial Analysis of the 2017 Outbreak of Hemorrhagic Disease and Physiographic Region in the Eastern United States
Cited by: 7
Author(s): Christine L Casey, Stephen L. Rathbun, David E. Stallknecht, Mark G. Ruder
Software Mentions: 7
Published: over 5 years ago

10.18632/aging.101356

A hypothesis-driven approach identifies CDK4 and CDK6 inhibitors as candidate drugs for treatments of adrenocortical carcinomas
Cited by: 22
Author(s): Djihad Hadjadj, Su-Jung Kim, Thomas Denecker, Laura Ben Driss, Jean‐Charles Cadoret, Chrystelle Maric, Giuseppe Baldacci, Fabien Fauchereau
Software Mentions: 7
Published: almost 9 years ago

10.1371/journal.pone.0104705

Laurentian Great Lakes Phytoplankton and Their Water Quality Characteristics, Including a Diatom-Based Model for Paleoreconstruction of Phosphorus
Cited by: 37
Author(s): Euan D. Reavie, Adam J. Heathcote, Victoria L. Shaw Chraïbi
Software Mentions: 7
Published: about 12 years ago

10.3390/ijms21239218

Transcriptome Remodeling in Gradual Development of Inverse Resistance between Paclitaxel and Cisplatin in Ovarian Cancer Cells
Cited by: 9
Author(s): Jolanta Szenajch, Alicja Szabelska‐Berȩsewicz, Aleksandra Świercz, Joanna Zyprych-Walczak, Idzi Siatkowski, Michał Góralski, Agnieszka Synowiec, Luiza Handschuh
Software Mentions: 7
Published: almost 6 years ago

10.3389/fneur.2019.01117

Normative Data and Minimally Detectable Change for Inner Retinal Layer Thicknesses Using a Semi-automated OCT Image Segmentation Pipeline
Cited by: 33
Author(s): Seyedamirhosein Motamedi, K. Gawlik, Noah Ayadi, Hanna Zimmermann, Susanna Asseyer, Charlotte Bereuter, Janine Mikolajczak, Friedemann Paul, Ella-Maria Kadas, Alexander U. Brandt
Software Mentions: 7
Published: almost 7 years ago

10.1534/g3.117.300479

Multivariate Analysis of the Cotton Seed Ionome Reveals a Shared Genetic Architecture
Cited by: 13
Author(s): Duke Pauli, Gregory R. Ziegler, Min Ren, Matthew A. Jenks, Douglas J. Hunsaker, Min Zhang, Ivan Baxter, Michael A. Gore
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pone.0233235

Dominance rank but not body size influences female reproductive success in mountain gorillas
Cited by: 19
Author(s): Edward Wright, Jordi Galbany, Shannon C. McFarlin, Eric Ndayishimiye, Tara S. Stoinski, Martha M. Robbins
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-020-80614-5

Implicit Theory of Mind under realistic social circumstances measured with mobile eye-tracking
Cited by: 9
Author(s): Louisa Kulke, Max Andreas Bosse Hinrichs
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0158911

Wolves Recolonizing Islands: Genetic Consequences and Implications for Conservation and Management
Cited by: 8
Author(s): Liivi Plumer, Marju Keis, Jaanus Remm, Maris Hindrikson, I. Jõgisalu, Peep Männil, Marko Kübarsepp, Urmas Saarma
Software Mentions: 7
Published: over 10 years ago

10.1038/s41598-020-75473-z

Personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning
Cited by: 16
Author(s): Satoru Kawakita, Jennifer L. Beaumont, Vadim Jucaud, Matthew J Everly
Software Mentions: 7
Published: almost 6 years ago

10.3390/plants8070224

Phenotypic and Genetic Variation of an Interspecific Centaurium Hybrid (Gentianaceae) and Its Parental Species
Cited by: 4
Author(s): Tijana Banjanac, Sanja Đurović, Mihailo Jelić, Milan Dragićević, Danijela Mišić, Marijana Škorić, Jelena Živković, Branislav Šiler
Software Mentions: 7
Published: about 7 years ago

Projects: pypi: stats

Science Score: 90/100

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Papers Mentioning stats 3,105