Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.17145.2

https://doi.org/10.12688/f1000research.17145.2

Cited by: 35
Author(s): Ashis Saha, Alexis Battle
Published: about 5 years ago

Software Mentions 7

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
cran: argparser
Command-Line Argument Parser
Papers that mentioned: 2
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017