Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: pandas

https://packages.ecosyste.ms/registries/pypi.org/packages/pandas

Powerful data structures for data analysis, time series, and statistics
103 versions
Latest release: about 1 year ago
17,045 dependent packages
144,415,161 downloads last month

Papers Mentioning pandas 640

10.2196/jmir.5461
What Are We Looking for in Computer-Based Learning Interventions in Medical Education? A Systematic Review
Cited by: 60
Author(s): Tiago Taveira-Gomes, Patrícia Ferreira, Isabel Taveira-Gomes, Mílton Severo, Manuela Ferreira
Software Mentions: 8
Published: over 8 years ago
10.1371/journal.pbio.3001172
Perception of biological motion by jumping spiders
Cited by: 16
Author(s): Massimo De Agrò, Daniela C. Rößler, Kris Kim, Paul S. Shamble
Software Mentions: 8
Published: over 3 years ago
10.1371/journal.pntd.0008755
Combining natural language processing and metabarcoding to reveal pathogen-environment associations
Cited by: 2
Author(s): David Molik, DeAndre Tomlinson, Shane Davitt, Eric Lease Morgan, Matthew Sisk, Benjamin Roche, Natalie Meyers, Michael E. Pfrender
Software Mentions: 8
Published: over 3 years ago
10.7554/eLife.47859
Persistent epigenetic memory impedes rescue of the telomeric phenotype in human ICF iPSCs following DNMT3B correction
Cited by: 15
Author(s): Shir Toubiana, Miriam Gagliardi, Mariarosaria Papa, Roberta Manco, Maty Tzukerman, Maria R. Matarazzo, Sara Selig
Software Mentions: 8
Published: about 5 years ago
10.3390/cancers13071734
Role for the Histone Demethylase KDM4B in Rhabdomyosarcoma via CDK6 and CCNA2: Compensation by KDM4A and Apoptotic Response of Targeting Both KDM4B and KDM4A
Cited by: 5
Author(s): Zoë S. Walters, Ewa Aładowicz, Bárbara Villarejo-Balcells, Gary Nugent, Joanna Selfe, Paul D. Eve, Julian Blagg, Olivia W. Rossanese, Janet Shipley
Software Mentions: 8
Published: over 3 years ago
10.3390/biom10060878
High-Throughput Identification of Adapters in Single-Read Sequencing Data
Cited by: 3
Author(s): Asan M. S. H. Mohideen, Steinar Johansen, Igor Babiak
Software Mentions: 8
Published: over 4 years ago
10.7717/peerj.10670
Digital Cell Sorter (DCS): a cell type identification, anomaly detection, and Hopfield landscapes toolkit for single-cell transcriptomics
Cited by: 8
Author(s): Sergii Domanskyi, Alex Hakansson, T. J. Bertus, Giovanni Paternostro, Carlo Piermarocchi
Software Mentions: 8
Published: almost 4 years ago
10.3390/e23020160
Influence Cascades: Entropy-Based Characterization of Behavioral Influence Patterns in Social Media
Cited by: 5
Author(s): Chathurani Senevirathna, Chathika Gunaratne, William Rand, Chathura Jayalath, Iván Garibay
Software Mentions: 8
Published: almost 4 years ago
10.1016/j.patter.2021.100270
ACSNI: An unsupervised machine-learning tool for prediction of tissue-specific pathway components using gene expression profiles
Cited by: 1
Author(s): Chinedu Anthony Anene, Faraz Khan, Findlay Bewicke-Copley, Eleni Maniati, Jun Wang
Software Mentions: 8
Published: over 3 years ago
10.1371/journal.pbio.3001341
Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain
Cited by: 3
Author(s): Shaina Lu, Cantin Ortiz, Daniel Fürth, Stephan Fischer, Konstantinos Meletis, Anthony M. Zador, Jesse Gillis
Software Mentions: 8
Published: over 3 years ago
10.3390/plants10050840
Development of an Image Analysis Pipeline to Estimate Sphagnum Colony Density in the Field
Cited by: 1
Author(s): Willem Q. M. van de Koot, Larissa J. J. van Vliet, Wei‐Lun Chen, John Doonan, Cândida Nibau
Software Mentions: 8
Published: over 3 years ago
10.15252/msb.20198831
The impact of the genetic background on gene deletion phenotypes in <i>Saccharomyces cerevisiae</i>
Cited by: 40
Author(s): Marco Galardini, Bede P. Busby, Cristina Viéitez, Alistair S. Dunham, Athanasios Typas, Pedro Beltrão
Software Mentions: 7
Published: almost 5 years ago
10.1038/s41598-021-92799-4
Long-term cancer survival prediction using multimodal deep learning
Cited by: 60
Author(s): Luís A. Vale-Silva, Karl Rohr
Software Mentions: 7
Published: over 3 years ago
10.3389/fninf.2019.00014
Visbrain: A Multi-Purpose GPU-Accelerated Open-Source Suite for Multimodal Brain Data Visualization
Cited by: 44
Author(s): Etienne Combrisson, Raphaël Vallat, Christian O’Reilly, Mainak Jas, Annalisa Pascarella, Anne-Lise Saive, Thomas Thiery, David Meunier, Dmitrii Altukhov, Tarek Lajnef, Perrine Ruby, Aymeric Guillot, Karim Jerbi
Software Mentions: 7
Published: over 5 years ago
10.1371/journal.pcbi.1004896
Deep Neural Networks as a Computational Model for Human Shape Sensitivity
Cited by: 263
Author(s): Jonas Kubilius, Stefania Bracci, Hans Op de Beeck
Software Mentions: 7
Published: over 8 years ago
10.1186/s13550-020-00671-9
18F-FDG PET and DCE kinetic modeling and their correlations in primary NSCLC: first voxel-wise correlative analysis of human simultaneous [18F]FDG PET-MRI data
Cited by: 6
Author(s): Florent L. Besson, Brice Fernandez, Sylvain Faure, Olaf Mercier, Andrei Seferian, Xavier Mignard, Sacha Mussot, C. Le Péchoux, Caroline Caramella, Angela Botticella, Antonin Lévy, Florence Parent, Sophie Bulifon, David Montani, Délphine Mitilian, Élie Fadel, David Planchard, Benjamin Besse, Maria-Rosa Ghigna-Bellinzoni, Claude Comtat, Vincent Lebon, Emmanuel Durand
Software Mentions: 7
Published: over 4 years ago
10.1038/s41598-021-83784-y
Early risk assessment for COVID-19 patients from emergency department data using machine learning
Cited by: 57
Author(s): Stefan Heldt, Marcela P. Vizcaychipi, Sophie Peacock, Mattia Cinelli, Lachlan McLachlan, Fernando Andreotti, Stojan Jovanovic, Robert Dürichen, N. A. Lipunova, Robert A. Fletcher, Anne Hancock, Alex McCarthy, Richard A. Pointon, Alexander Brown, James Eaton, Roberto Liddi, Lucy Mackillop, Lionel Tarassenko, Rabia Khan
Software Mentions: 7
Published: almost 4 years ago
10.1038/s41598-020-71805-1
Northstar enables automatic classification of known and novel cell types from tumor samples
Cited by: 8
Author(s): Fabio Zanini, Bojk A. Berghuis, Robert C. Jones, Benedetta Nicolis di Robilant, Rachel Yuan Nong, Jeffrey A. Norton, Michael F. Clarke, Stephen R. Quake
Software Mentions: 7
Published: about 4 years ago
10.1186/s12859-020-03830-w
CosinorPy: a python package for cosinor-based rhythmometry
Cited by: 31
Author(s): Miha Moškon
Software Mentions: 7
Published: about 4 years ago
10.1107/S2053273319011446
Bayesian machine learning improves single-wavelength anomalous diffraction phasing
Cited by: 10
Author(s): María-José García-Bonete, Gergely Katona
Software Mentions: 7
Published: about 5 years ago
10.1186/s40168-020-00993-9
PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data
Cited by: 61
Author(s): Laura de Nies, Sara Lopes, Susheel Bhanu Busi, Valentina Galata, Anna Heintz‐Buschart, Cédric Christian Laczny, Patrick May, Paul Wilmes
Software Mentions: 7
Published: almost 4 years ago
10.1038/s41598-020-78777-2
Evolutionary design of optimal surface topographies for biomaterials
Cited by: 4
Author(s): Aliaksei Vasilevich, Aurélie Carlier, David A. Winkler, Shantanu Singh, Jan de Boer
Software Mentions: 7
Published: almost 4 years ago
10.1371/journal.pone.0118442
Active Degradation Explains the Distribution of Nuclear Proteins during Cellular Senescence
Cited by: 2
Author(s): Enrico Giampieri, Marco De Cecco, Daniel Remondini, John M. Sedivy, Gastone Castellani
Software Mentions: 7
Published: over 9 years ago
10.1038/s41598-020-58601-7
Nationwide prediction of type 2 diabetes comorbidities
Cited by: 27
Author(s): Piotr Dworzyński, Martin Aasbrenn, Klaus Rostgaard, Mads Melbye, Thomas Alexander Gerds, Henrik Hjalgrim, Tune H. Pers
Software Mentions: 7
Published: almost 5 years ago
10.1371/journal.pone.0253411
PDBrenum: A webserver and program providing Protein Data Bank files renumbered according to their UniProt sequences
Cited by: 12
Author(s): Bulat Faezov, Roland L. Dunbrack
Software Mentions: 7
Published: over 3 years ago
10.1371/journal.pone.0230888
Site-specific machine learning predictive fertilization models for potato crops in Eastern Canada
Cited by: 13
Author(s): Zonlehoua Coulibali, Athyna N. Cambouris, Léon‐Étienne Parent
Software Mentions: 7
Published: over 4 years ago
10.1371/journal.pone.0240573
Assessment of software methods for estimating protein-protein relative binding affinities
Cited by: 10
Author(s): Tawny R Gonzalez, Kyle Martin, Jonathan E. Barnes, Jagdish Suresh Patel, F. Marty Ytreberg
Software Mentions: 7
Published: almost 4 years ago
10.1126/sciadv.abf7129
Endogenous variation in ventromedial prefrontal cortex state dynamics during naturalistic viewing reflects affective experience
Cited by: 55
Author(s): Luke J. Chang, Eshin Jolly, Jin Hyun Cheong, Kristina M. Rapuano, Nathan Greenstein, Pin-Hao A. Chen, Jeremy R. Manning
Software Mentions: 7
Published: over 3 years ago
10.1371/journal.pgen.1009303
Creating artificial human genomes using generative neural networks
Cited by: 51
Author(s): Burak Yelmen, Aurélien Decelle, Linda Ongaro, Davide Marnetto, Corentin Tallec, Francesco Montinaro, Cyril Furtlehner, Luca Pagani, Flora Jay
Software Mentions: 7
Published: almost 4 years ago
10.1186/s12864-019-5924-6
A catalog of CasX genome editing sites in common model organisms
Cited by: 4
Author(s): Elisha D.O. Roberson
Software Mentions: 7
Published: over 5 years ago
10.1016/j.dib.2021.106968
Dataset on structure and physical properties of stable diatomic systems based on van der Waals density functional method
Cited by: 2
Author(s): Kiyou Shibata, Eiki Suzuki, Teruyasu Mizoguchi
Software Mentions: 7
Published: over 3 years ago
10.1038/s41598-017-16050-9
Computational derivation of a molecular framework for hair follicle biology from disease genes
Cited by: 4
Author(s): Rachel K. Severin, Xinwei Li, Kun Qian, Andreas Mueller, Lynn Petukhova
Software Mentions: 7
Published: almost 7 years ago
10.1038/s41598-019-54700-2
Murine xenograft bioreactors for human immunopeptidome discovery
Cited by: 8
Author(s): James Heather, Paisley T. Myers, Feng Shi, Mohammad Ovais Aziz‐Zanjani, Keira E. Mahoney, Matthew Perez, Benjamin Morin, Christine Brittsan, Jeffrey Shabanowitz, Donald F. Hunt, Mark Cobbold
Software Mentions: 7
Published: almost 5 years ago
10.3389/fgene.2021.641788
Successful ATAC-Seq From Snap-Frozen Equine Tissues
Cited by: 8
Author(s): Sichong Peng, Rebecca R. Bellone, Jessica L. Petersen, Theodore S. Kalbfleisch, Carrie J. Finno
Software Mentions: 7
Published: over 3 years ago
10.1186/s12859-021-03986-z
MSIFinder: a python package for detecting MSI status using random forest classifier
Cited by: 6
Author(s): Tao Zhou, Libin Chen, Jing Guo, Mengmeng Zhang, Yanrui Zhang, Shanbo Cao, Li Feng, Haijun Wang
Software Mentions: 7
Published: over 3 years ago
10.3390/jpm11060582
Body Mass Index and Birth Weight Improve Polygenic Risk Score for Type 2 Diabetes
Cited by: 11
Author(s): Avigail Moldovan, Yedael Y. Waldman, Nadav Brandes, Michal Linial
Software Mentions: 7
Published: over 3 years ago
10.1038/s42003-020-01626-5
Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups
Cited by: 44
Author(s): Kaleb Z. Abram, Zulema Udaondo, Carissa Bleker, Visanu Wanchai, Trudy M. Wassenaar, Michael S. Robeson, David W. Ussery
Software Mentions: 7
Published: almost 4 years ago
10.1038/s42003-021-02437-y
Neocortical inhibitory interneuron subtypes are differentially attuned to synchrony- and rate-coded information
Cited by: 3
Author(s): Luke Y. Prince, Matthew M Tran, Dorian Grey, Lydia Saad, Helen Chasiotis, Jeehyun Kwag, Michael Köhl, Blake A Richards
Software Mentions: 7
Published: over 3 years ago
10.1371/journal.pone.0231824
Investigating the effect of dependence between conditions with Bayesian Linear Mixed Models for motif activity analysis
Cited by: 0
Author(s): Simone Lederer, Tom Heskes, Simon J. van Heeringen, Cornelis A. Albers
Software Mentions: 7
Published: over 4 years ago
10.1371/journal.pone.0237207
Gut microbiota ecology: Biodiversity estimated from hybrid neutral-niche model increases with health status and aging
Cited by: 4
Author(s): Claudia Sala, Enrico Giampieri, Silvia Vitali, Paolo Garagnani, Daniel Remondini, Armando Bazzani, Claudio Franceschi, Gastone Castellani
Software Mentions: 7
Published: about 4 years ago
10.1186/s13321-019-0351-x
TeachOpenCADD: a teaching platform for computer-aided drug design using open source packages and data
Cited by: 25
Author(s): Dominique Sydow, Andrea Morger, Maximilian Driller, Andrea Volkamer
Software Mentions: 7
Published: over 5 years ago
10.1371/journal.pcbi.1006741
Spatial synchronization codes from coupled rate-phase neurons
Cited by: 19
Author(s): Joseph D. Monaco, Rose M. De Guzman, Hugh T. Blair, Kechen Zhang
Software Mentions: 7
Published: almost 6 years ago
10.1038/s41598-018-22083-5
Chronic helminth infection burden differentially affects haematopoietic cell development while ageing selectively impairs adaptive responses to infection
Cited by: 14
Author(s): Simon A. Babayan, Amy Sinclair, Jessica Duprez, Colin Selman
Software Mentions: 7
Published: over 6 years ago
10.1186/s12864-021-07711-1
Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana
Cited by: 6
Author(s): Georg Back, Dirk Walther
Software Mentions: 7
Published: over 3 years ago
10.7554/eLife.45403
The dynamic conformational landscape of the protein methyltransferase SETD8
Cited by: 37
Author(s): Shi Chen, Rafal Wiewiora, Fanwang Meng, Nicolas Babault, Anqi Ma, Wenyu Yu, Kun Qian, Hao Hu, Hua Zou, Junyi Wang, Shijie Fan, Gil Blum, Fábio Pittella Silva, Kyle A. Beauchamp, W. Tempel, Hualiang Jiang, Kaixian Chen, R.J. Skene, Y. George Zheng, Peter J. Brown, Jian Jin, Cheng Luo, John D. Chodera, Minkui Luo
Software Mentions: 7
Published: over 5 years ago
10.7554/eLife.31867
Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry
Cited by: 16
Author(s): Peter L. Freddolino, Jiping Yang, Amir Momen-Roknabadi, Saeed Tavazoie
Software Mentions: 7
Published: over 6 years ago
10.12688/f1000research.14470.2
Clinotator: analyzing ClinVar variation reports to prioritize reclassification efforts
Cited by: 2
Author(s): Robert R. Butler, Pablo V. Gejman
Software Mentions: 7
Published: over 6 years ago
10.1021/acsomega.1c00991
Global Property Prediction: A Benchmark Study on Open-Source, Perovskite-like Datasets
Cited by: 5
Author(s): Felix Mayr, Alessio Gagliardi
Software Mentions: 7
Published: over 3 years ago
10.1172/jci.insight.148035
Single-cell immunophenotyping of the skin lesion erythema migrans identifies IgM memory B cells
Cited by: 7
Author(s): Ruoyi Jiang, Hailong Meng, Khadir Raddassi, Ira Fleming, Kenneth B. Hoehn, Kenneth R. Dardick, Alexia A. Belperron, Ruth R. Montgomery, Alex K. Shalek, David A. Hafler, Steven H. Kleinstein, Linda K. Bockenstedt
Software Mentions: 7
Published: over 3 years ago
10.1128/mSystems.00811-21
Separation of Donor and Recipient Microbial Diversity Allows Determination of Taxonomic and Functional Features of Gut Microbiota Restructuring following Fecal Transplantation
Cited by: 4
Author(s): Evgenii I. Olekhnovich, A. B. Ivanov, Vladimir Ulyantsev, Elena Ilina
Software Mentions: 7
Published: about 3 years ago
10.12688/f1000research.8452.2
The effects of an editor serving as one of the reviewers during the peer-review process
Cited by: 4
Author(s): Marco Giordan, Attila Csikász‐Nagy, Andy Collings, Federico Vaggi
Software Mentions: 7
Published: about 8 years ago
10.1371/journal.pone.0223141
Attenuation correction using 3D deep convolutional neural network for brain 18F-FDG PET/MR: Comparison with Atlas, ZTE and CT based attenuation correction
Cited by: 36
Author(s): Paul Blanc-Durand, Maya Khalifé, B. Sgard, Sandeep Kaushik, Marine Soret, Tiss Amal, Georges El Fakhri, Marie‐Odile Habert, Florian Wiesinger, Aurélie Kas
Software Mentions: 7
Published: about 5 years ago
10.14814/phy2.14880
Animal blood in translational research: How to adjust animal blood viscosity to the human standard
Cited by: 6
Author(s): Paul Ecker, Andreas Sparer, Benjamin Lukitsch, Martin Elenkov, Monika Seltenhammer, Richard Crevenna, Margit Gfoehler, Michael Harasek, Ursula Windberger
Software Mentions: 7
Published: over 3 years ago
10.7554/eLife.53281
Feedback inhibition and its control in an insect olfactory circuit
Cited by: 8
Author(s): Subhasis Ray, Zane Aldworth, Mark Stopfer
Software Mentions: 7
Published: over 4 years ago
10.12688/f1000research.27395.2
GeNePy3D: a quantitative geometry python toolbox for bioimaging
Cited by: 1
Author(s): Minh-Son Phan, Anatole Chessel
Software Mentions: 7
Published: over 3 years ago
10.3390/s21165473
Generator of Slow Denial-of-Service Cyber Attacks
Cited by: 6
Author(s): Marek Sikora, Radek Fujdiak, Karel Kuchař, Eva Holasová, Jiří Mišurec
Software Mentions: 7
Published: over 3 years ago
10.3390/s21175740
BioPyC, an Open-Source Python Toolbox for Offline Electroencephalographic and Physiological Signals Classification
Cited by: 5
Author(s): Aurélien Appriou, Léa Pillette, David Trocellier, Dan Dutartre, Andrzej Cichocki, Fabien Lotte
Software Mentions: 7
Published: about 3 years ago
10.1128/mBio.03221-19
A Master Regulator of Bacteroides thetaiotaomicron Gut Colonization Controls Carbohydrate Utilization and an Alternative Protein Synthesis Factor
Cited by: 24
Author(s): Guy E. Townsend, Weiwei Han, Nathan D. Schwalm, Xinyu Hong, Natasha A. Bencivenga-Barry, Andrew L. Goodman, Eduardo A. Groisman
Software Mentions: 7
Published: over 4 years ago
10.1371/journal.pone.0250170
Introducing Point-of-Interest as an alternative to Area-of-Interest for fixation duration analysis
Cited by: 7
Author(s): Nak Won Rim, Kyoung Whan Choe, Coltan Scrivner, Marc G. Berman
Software Mentions: 7
Published: over 3 years ago
10.1186/s12859-019-2796-3
rstoolbox - a Python library for large-scale analysis of computational protein design data and structural bioinformatics
Cited by: 15
Author(s): Jaume Bonet, Zander Harteveld, Fabian Sesterhenn, Andreas Scheck, Bruno E. Correia
Software Mentions: 7
Published: over 5 years ago
10.3390/s20154131
Framework and Methodology for Establishing Port-City Policies Based on Real-Time Composite Indicators and IoT: A Practical Use-Case
Cited by: 8
Author(s): Ignacio Lacalle, Andreu Belsa, Rafael Vaño, Carlos E. Palau
Software Mentions: 7
Published: over 4 years ago
10.1007/s00216-021-03261-3
Need for speed: evaluation of dilute and shoot-mass spectrometry for accelerated metabolic phenotyping in bioprocess development
Cited by: 5
Author(s): Alexander M. Reiter, Laura Herbst, Wolfgang Wiechert, Marco Oldiges
Software Mentions: 7
Published: over 3 years ago
10.1186/s12859-015-0608-y
affy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism calling
Cited by: 3
Author(s): Carles Hernandez‐Ferrer, Inés Quintela, Katharina Danielski, Ángel Carracedo, Luis A. Pérez‐Jurado, Juan R. González
Software Mentions: 7
Published: over 9 years ago
10.3390/s21082852
Classification of Skin Disease Using Deep Learning Neural Networks with MobileNet V2 and LSTM
Cited by: 294
Author(s): Parvathaneni Naga Srinivasu, Jalluri Gnana SivaSai, Muhammad Fazal Ijaz, Akash Kumar Bhoi, Wonjoon Kim, James Jin Kang
Software Mentions: 7
Published: over 3 years ago
10.3758/s13428-020-01430-3
The Tobii Pro Spectrum: A useful tool for studying microsaccades?
Cited by: 7
Author(s): Maria Nyström, Diederick C Niehorster, Richard Andersson, Ignace T. C. Hooge
Software Mentions: 6
Published: over 4 years ago
10.1186/s12870-017-1070-y
Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions
Cited by: 12
Author(s): Martin Schmidt, Michiel Van Bel, Magdalena Wołoszyńska, Bram Slabbinck, Cindy Martens, Marc De Block, Frederik Coppens, Mieke Van Lijsebettens
Software Mentions: 6
Published: over 7 years ago
10.1002/1878-0261.12786
Allele‐specific proximal promoter hypomethylation of the telomerase reverse transcriptase gene (<i>TERT</i>) associates with <i>TERT</i> expression in multiple cancers
Cited by: 20
Author(s): Teisha J. Rowland, Andrew J. Bonham, Thomas R. Cech
Software Mentions: 6
Published: about 4 years ago
10.1371/journal.pone.0244175
Rapid detection of fast innovation under the pressure of COVID-19
Cited by: 11
Author(s): Nicola Melluso, Andrea Bonaccorsi, Filippo Chiarello, Gualtiero Fantoni
Software Mentions: 6
Published: almost 4 years ago
10.1016/j.eclinm.2021.101046
Machine learning analysis of non-marital sexual violence in India
Cited by: 2
Author(s): Anita Raj, Nabamallika Dehingia, Abhishek Singh, Julian McAuley, Lotus McDougal
Software Mentions: 6
Published: about 3 years ago
10.1038/s41598-021-94105-8
Sublinear domination and core–periphery networks
Cited by: 1
Author(s): Marios Papachristou
Software Mentions: 6
Published: over 3 years ago
10.3389/fmicb.2020.00523
Differences in the Transcriptomic Response of Campylobacter coli and Campylobacter lari to Heat Stress
Cited by: 13
Author(s): Carolin Riedel, Konrad U. Förstner, Christoph Püning, Thomas Alter, Cynthia M. Sharma, Greta Gölz
Software Mentions: 6
Published: over 4 years ago
10.1074/mcp.O117.068122
Prediction of Protein Complexes in Trypanosoma brucei by Protein Correlation Profiling Mass Spectrometry and Machine Learning
Cited by: 23
Author(s): Thomas W. M. Crozier, Michele Tinti, Mark Larance, Angus I. Lamond, Michael A. J. Ferguson
Software Mentions: 6
Published: almost 7 years ago
10.1093/molbev/msz214
The Genetic Background Modulates the Evolution of Fluoroquinolone-Resistance in Mycobacterium tuberculosis
Cited by: 29
Author(s): Rhastin A D Castro, Amanda Ross, Lujeko Kamwela, Miriam Reinhard, Chloé Loiseau, Julia Feldmann, Sònia Borrell, Andrej Trauner, Sébastien Gagneux
Software Mentions: 6
Published: about 5 years ago
10.3389/fninf.2013.00044
An automated and reproducible workflow for running and analyzing neural simulations using Lancet and IPython Notebook
Cited by: 19
Author(s): Jean-Luc Stevens, Marco Elver, James A. Bednar
Software Mentions: 6
Published: almost 12 years ago
10.1186/s12920-016-0164-y
Integrative analyses of proteomics and RNA transcriptomics implicate mitochondrial processes, protein folding pathways and GWAS loci in Parkinson disease
Cited by: 84
Author(s): Alexandra Dumitriu, Javad Golji, Adam Labadorf, Benbo Gao, Thomas G. Beach, Richard H. Myers, Kenneth A. Longo, Jeanne C. Latourelle
Software Mentions: 6
Published: almost 9 years ago
10.1038/s41598-020-78101-y
Meta-analysis of viscosity of aqueous deep eutectic solvents and their components
Cited by: 26
Author(s): Gudrun Gygli, Xinmeng Xu, Jürgen Pleiss
Software Mentions: 6
Published: almost 4 years ago
10.1186/s12920-019-0581-9
The caudate nucleus undergoes dramatic and unique transcriptional changes in human prodromal Huntington’s disease brain
Cited by: 26
Author(s): Filisia Agus, Diego Crespo, Richard H. Myers, Adam Labadorf
Software Mentions: 6
Published: about 5 years ago
10.1038/s41598-020-63036-1
Hierarchical clustering of MS/MS spectra from the firefly metabolome identifies new lucibufagin compounds
Cited by: 12
Author(s): C. J. Rawlinson, Darcy A. B. Jones, S. Rakshit, Shiv Meka, Caroline S. Moffat, Paula Moolhuijzen
Software Mentions: 6
Published: over 4 years ago
10.3389/fmed.2019.00126
Distinguishing Between Biological and Technical Replicates in Hypertension Research on Isolated Arteries
Cited by: 11
Author(s): D Tsvetkov, Е. В. Колпаков, Mario Kaßmann, Rudolf Schubert, Maik Gollasch
Software Mentions: 6
Published: over 5 years ago
10.15252/emmm.202013257
Urinary proteome profiling for stratifying patients with familial Parkinson’s disease
Cited by: 66
Author(s): Sebastian Virreira Winter, Özge Karayel, Mike Strauss, Shalini Padmanabhan, Matthew Surface, Kalpana Merchant, Matthias Mann
Software Mentions: 6
Published: almost 4 years ago
10.3389/fimmu.2021.707830
In-Depth Profiling of T-Cell Responsiveness to Commonly Recognized CMV Antigens in Older People Reveals Important Sex Differences
Cited by: 6
Author(s): Bernhard Reus, Stefano Caserta, Martin Larsen, George W. Morrow, Aalia Bano, Michael Hallensleben, Chakravarthi Rajkumar, Alejandra Pera, Florian Kern
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pone.0226501
pyKNEEr: An image analysis workflow for open and reproducible research on femoral knee cartilage
Cited by: 11
Author(s): Serena Bonaretti, Garry E. Gold, Gary S. Beaupré
Software Mentions: 6
Published: almost 5 years ago
10.1371/journal.pone.0143563
RNA Sequence Analysis of Human Huntington Disease Brain Reveals an Extensive Increase in Inflammatory and Developmental Gene Expression
Cited by: 135
Author(s): Adam Labadorf, Andrew G. Hoss, Valentina N. Lagomarsino, Jeanne C. Latourelle, Tiffany C. Hadzi, Joli Bregu, Marcy E. MacDonald, James F. Gusella, Jiang‐Fan Chen, Schahram Akbarian, Zhiping Weng, Richard H. Myers
Software Mentions: 6
Published: almost 9 years ago
10.1038/s41598-019-55777-5
Clustering of atomic displacement parameters in bovine trypsin reveals a distributed lattice of atoms with shared chemical properties
Cited by: 7
Author(s): Viktor Ahlberg Gagnér, Ida Lundholm, María-José García-Bonete, Helena Rodilla, Ran Friedman, Vitali Zhaunerchyk, Gleb Bourenkov, Thomas R. Schneider, Jan Stake, Gergely Katona
Software Mentions: 6
Published: almost 5 years ago
10.1038/s41598-020-70259-9
liputils: a Python module to manage individual fatty acid moieties from complex lipids
Cited by: 3
Author(s): Stefano Manzini, M. Busnelli, A Colombo, Mostafa Kiamehr, Giulia Chiesa
Software Mentions: 6
Published: over 4 years ago
10.1371/journal.pone.0235159
Zooplankton biogeographic boundaries in the California Current System as determined from metabarcoding
Cited by: 13
Author(s): Kathleen J. Pitz, Jinchen Guo, Shannon B. Johnson, Tracy L. Campbell, Haibin Zhang, Robert C. Vrijenhoek, Francisco P. Chávez, Jonathan B. Geller
Software Mentions: 6
Published: over 4 years ago
10.3390/metabo11040236
Metabolite Profile of Treatment-Naive Metabolic Syndrome Subjects in Relation to Cardiovascular Disease Risk
Cited by: 5
Author(s): Moritz V. Warmbrunn, Annefleur M. Koopen, Nicolien C. de Clercq, Pieter F. de Groot, Ruud S. Kootte, Kristien E. Bouter, Kasper W. ter Horst, Annick V. Hartstra, Mireille J. Serlie, Mariëtte T. Ackermans, Maarten R. Soeters, Daniël H. van Raalte, Mark Davids, Max Nieuwdorp, Albert K. Groen
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pone.0257535
Recalibrating expectations about effect size: A multi-method survey of effect sizes in the ABCD study
Cited by: 60
Author(s): Max M. Owens, Alexandra Potter, Courtland S. Hyatt, Matthew D. Albaugh, Wesley K. Thompson, Terry L. Jernigan, Dekang Yuan, Sage Hahn, Nicholas Allgaier, Hugh Garavan
Software Mentions: 6
Published: about 3 years ago
10.1371/journal.pgen.1009591
RDC complex executes a dynamic piRNA program during Drosophila spermatogenesis to safeguard male fertility
Cited by: 17
Author(s): Peiwei Chen, Yicheng Luo, Alexei A. Aravin
Software Mentions: 6
Published: about 3 years ago
10.1016/j.ssmph.2020.100687
Application of machine learning to understand child marriage in India
Cited by: 9
Author(s): Anita Raj, Nabamallika Dehingia, Abhishek Singh, Lotus McDougal, Julian McAuley
Software Mentions: 6
Published: almost 4 years ago
10.1038/srep30388
Smoking, pregnancy and the subgingival microbiome
Cited by: 31
Author(s): Akshay D. Paropkari, Binnaz Leblebicioğlu, Lisa M. Christian, Purnima Kumar
Software Mentions: 6
Published: over 8 years ago
10.3390/md17020081
Predicting Blood–Brain Barrier Permeability of Marine-Derived Kinase Inhibitors Using Ensemble Classifiers Reveals Potential Hits for Neurodegenerative Disorders
Cited by: 28
Author(s): Fabien Plisson, Andrew M. Piggott
Software Mentions: 6
Published: almost 6 years ago
10.1007/s40747-020-00216-6
A novel hand-crafted with deep learning features based fusion model for COVID-19 diagnosis and classification using chest X-ray images
Cited by: 60
Author(s): K. Shankar, Eswaran Perumal
Software Mentions: 6
Published: about 4 years ago
10.1371/journal.pcbi.1008978
scHiCTools: A computational toolbox for analyzing single-cell Hi-C data
Cited by: 9
Author(s): Xinjun Li, Fan Feng, Hongxi Pu, Wai Yan Leung, Jie Liu
Software Mentions: 6
Published: over 3 years ago
10.1186/s12864-020-07013-y
Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework
Cited by: 3
Author(s): Tanveer Ahmad, Nauman Ahmed, Zaid Al-Ars, H. Peter Hofstee
Software Mentions: 6
Published: about 4 years ago
10.3389/fimmu.2018.02342
Supplemented Alkaline Phosphatase Supports the Immune Response in Patients Undergoing Cardiac Surgery: Clinical and Computational Evidence
Cited by: 18
Author(s): Alva Presbitero, Emiliano Mancini, Ruud Brands, Valeria V. Krzhizhanovskaya, Peter M. A. Sloot
Software Mentions: 6
Published: about 6 years ago
10.1186/s13014-020-01683-4
Prostate cancer tumour control probability modelling for external beam radiotherapy based on multi-parametric MRI-GTV definition
Cited by: 6
Author(s): Ilias Sachpazidis, Panayiotis Mavroidis, Constantinos Zamboglou, Christina Marie Klein, Anca‐Ligia Grosu, Dimos Baltas
Software Mentions: 6
Published: about 4 years ago
10.1186/s13148-021-01029-1
Clinical evaluation of Bladder CARE, a new epigenetic test for bladder cancer detection in urine samples
Cited by: 12
Author(s): Paolo Piatti, Yap Ching Chew, Michiko Suwoto, Taikun Yamada, Benjamin Jara, Xiaoteng Jia, Wei Guo, Saum Ghodoussipour, Siamak Daneshmand, Hamed Ahmadi, Jeffrey M. Rice, Jeffrey M. Bhasin, Faith Holloway, Yvonne Tsai, Yoshitomo Chihara, Gangning Liang
Software Mentions: 6
Published: over 3 years ago
10.3389/fnhum.2019.00348
EEG-Based Classification of Internally- and Externally-Directed Attention in an Augmented Reality Paradigm
Cited by: 34
Author(s): Lisa-Marie Vortmann, Felix Kroll, Felix Putze
Software Mentions: 6
Published: about 5 years ago
10.1186/s12933-019-0879-0
Machine-learning to stratify diabetic patients using novel cardiac biomarkers and integrative genomics
Cited by: 45
Author(s): Quincy A. Hathaway, Skyler M. Roth, Mark V. Pinti, Daniel C. Sprando, Amina Kunovac, Andrya J. Durr, Chris C. Cook, Garrett K. Fink, Tristen B. Cheuvront, Jasmine H. Grossman, Ghadah A. Aljahli, Andrew Taylor, Andrew Giromini, Jessica L. Allen, John M. Hollander
Software Mentions: 6
Published: over 5 years ago