cran: vegan | Projects | Ecosyste.ms: Papers

10.3389/fgene.2019.00447

Leveraging Fecal Bacterial Survey Data to Predict Colorectal Tumors
Cited by: 11
Author(s): Bangzhou Zhang, Shuaimei Xu, Wei Xu, Qiongyun Chen, Zhangran Chen, Changsheng Yan, Yanyun Fan, Huangkai Zhang, Qi Liu, Jie Yang, Jinfeng Yang, Chuanxing Xiao, Hui Xu, Jianlin Ren
Software Mentions: 6
Published: over 7 years ago

10.1098/rstb.2019.0255

Dormancy dynamics and dispersal contribute to soil microbiome resilience
Cited by: 34
Author(s): Jackson W Sorensen, Ashley Shade
Software Mentions: 6
Published: over 6 years ago

10.1002/ece3.4283

A comparative analysis of metabarcoding and morphology‐based identification of benthic communities across different regional seas
Cited by: 47
Author(s): Abigail Cahill, John K. Pearman, Ángel Borja, Laura Carugati, Susana Carvalho, Roberto Danovaro, Sarah Dashfield, Romain David, Jean‐Pierre Féral, Sergej Olenin, Andrius Šiaulys, Paul J. Somerfield, Antoaneta Trayanova, María C. Uyarra, Anne Chenuil
Software Mentions: 6
Published: about 8 years ago

10.1038/s41598-021-98724-z

Novel attempt at discrimination of a bullet-shaped siphonophore (Family Diphyidae) using matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-ToF MS)
Cited by: 1
Author(s): Nayeon Park, Jisu Yeom, Raehyuk Jeong, Wonchoel Lee
Software Mentions: 6
Published: almost 5 years ago

10.3390/plants10091785

Roots of Apium graveolens and Petroselinum crispum—Insight into Phenolic Status against Toxicity Level of Trace Elements
Cited by: 9
Author(s): Danijela Arsenov, Milan Župunski, Slobodanka Pajević, Ivana Nemeš, Nataša Simin, Abdullah M Alnuqaydan, Malcolm Watson, Abdulaziz A. Aloliqi, Neda Mimica–Dukić
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-019-47921-y

Metataxonomic analyses reveal differences in aquifer bacterial community as a function of creosote contamination and its potential for contaminant remediation
Cited by: 9
Author(s): Aline Daniela Lopes Júlio, Ubiana de Cássia Mourão Silva, Julliane Dutra Medeiros, Daniel Morais, Vera Lúcia dos Santos
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pbio.3000534

The effects of soil phosphorus content on plant microbiota are driven by the plant phosphate starvation response
Cited by: 112
Author(s): Omri M. Finkel, Isai Salas-González, Gabriel Castrillo, Stijn Spaepen, Theresa F. Law, Paulo José Pereira Lima Teixeira, Corbin D. Jones, Jeffery L. Dangl
Software Mentions: 6
Published: almost 7 years ago

10.3390/plants10081574

Intra-Individual and Intraspecific Terpenoid Diversity in Erodium cicutarium
Cited by: 4
Author(s): Elisabeth J. Eilers
Software Mentions: 6
Published: about 5 years ago

10.1002/ece3.6934

Mechanisms governing avian phylosymbiosis: Genetic dissimilarity based on neutral and MHC regions exhibits little relationship with gut microbiome distributions of Galápagos mockingbirds
Cited by: 7
Author(s): Ramona Fleischer, Alice Risely, Paquita E. A. Hoeck, Lukas F. Keller, Simone Sommer
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0236200

Shelter use interactions of invasive lionfish with commercially and ecologically important native invertebrates on Caribbean coral reefs
Cited by: 6
Author(s): Christina L. Hunt, Dominic A. Andradi‐Brown, Callum J. Hudson, Joshua Bennett-Williams, Frankie Noades, Jocelyn Curtis-Quick, Owen T. Lewis, Dan A. Exton
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2017.00744

Alterations in the Rumen Liquid-, Particle- and Epithelium-Associated Microbiota of Dairy Cows during the Transition from a Silage- and Concentrate-Based Ration to Pasture in Spring
Cited by: 36
Author(s): Melanie Schären, Kerstin Kiri, Susanne Riede, Mark C. Gardener, Ulrich Meyer, Jürgen Hummel, Tim Urich, Gerhard Breves, Sven Dänicke
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pone.0169339

Comparison of bacterial communities from lava cave microbial mats to overlying surface soils from Lava Beds National Monument, USA
Cited by: 51
Author(s): Kathleen H. Lavoie, Ara S. Winter, Kaitlyn J. H. Read, Evan M. Hughes, M. Spilde, Diana E. Northup
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pone.0148016

Diversity and Biogeography of Bathyal and Abyssal Seafloor Bacteria
Cited by: 99
Author(s): Christina Bienhold, Lucie Zinger, Antje Boetius, Alban Ramette
Software Mentions: 6
Published: over 10 years ago

10.3389/fmicb.2015.01013

Evolutionary history influences the salinity preference of bacterial taxa in wetland soils
Cited by: 65
Author(s): Ember M. Morrissey, Rima B. Franklin
Software Mentions: 6
Published: almost 11 years ago

10.1002/ece3.5619

Post‐Pleistocene differentiation in a Central Interior Highlands endemic salamander
Cited by: 4
Author(s): Jacob J. Burkhart, Emily E. Puckett, Chelsey J. Beringer, Christine Sholy, Raymond D. Semlitsch, Lori S. Eggert
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0055674

Utilizing Descriptive Statements from the Biodiversity Heritage Library to Expand the Hymenoptera Anatomy Ontology
Cited by: 9
Author(s): Katja C. Seltmann, Zsolt Pénzes, Matthew Yoder, Matthew A. Bertone, Andrew R. Deans
Software Mentions: 6
Published: over 13 years ago

10.1038/s41598-021-92405-7

Microplastics accumulate fungal pathogens in terrestrial ecosystems
Cited by: 73
Author(s): Gerasimos Gkoutselis, Stephan Rohrbach, Janno Harjes, Martin Obst, Andreas Brachmann, Marcus A. Horn, Gerhard Rambold
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-021-87384-8

Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere
Cited by: 11
Author(s): Shinichi Yamazaki, Hossein Mardani-Korrani, Rumi Kaida, Kumiko Ochiai, Masaru Kobayashi, Atsushi J. Nagano, Yoshiharu Fujii, Akifumi Sugiyama, Yosuke Aoki
Software Mentions: 6
Published: over 5 years ago

10.3390/insects11080488

Arthropod Communities in Urban Agricultural Production Systems under Different Irrigation Sources in the Northern Region of Ghana
Cited by: 3
Author(s): Louis Amprako, Kathrin Stenchly, Martin Wiehle, G. Nyarko, Andreas Buerkert
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0052884

Wrangling Phosphoproteomic Data to Elucidate Cancer Signaling Pathways
Cited by: 17
Author(s): Mark L. Grimes, Wan-Jui Lee, Laurens van der Maaten, Paul Shannon
Software Mentions: 6
Published: over 13 years ago

10.1371/journal.pone.0221543

Insights on aquatic microbiome of the Indian Sundarbans mangrove areas
Cited by: 18
Author(s): Paltu Kumar Dhal, Gérmán A. Kopprio, Astrid Gärdes
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0117595

Ecosystem Functions across Trophic Levels Are Linked to Functional and Phylogenetic Diversity
Cited by: 63
Author(s): Patrick L. Thompson, T. Jonathan Davies, Andrew Gonzalez
Software Mentions: 6
Published: over 11 years ago

10.1038/s41598-021-87886-5

Metabolomics and transcriptomics to decipher molecular mechanisms underlying ectomycorrhizal root colonization of an oak tree
Cited by: 14
Author(s): Mónica Sebastiana, Albert Gargallo‐Garriga, Jordi Sardans, Míriam Pérez‐Trujillo, Filipa Monteiro, Andreia Figueiredo, Marisa Maia, Rui Nascimento, Marta Sousa Silva, António E. N. Ferreira, Carlos Cordeiro, A. Marques, Lisete Sousa, Rui Malhó, Josep Peñuelas
Software Mentions: 6
Published: over 5 years ago

10.1007/s10886-019-01126-9

Impact of Seasonal and Temperature-Dependent Variation in Root Defense Metabolites on Herbivore Preference in Taraxacum officinale
Cited by: 10
Author(s): Wei Huang, Zoe Bont, Maxime Hervé, Christelle Robert, Matthias Erb
Software Mentions: 6
Published: almost 7 years ago

10.1186/s40168-019-0705-7

Microbial indicators of environmental perturbations in coral reef ecosystems
Cited by: 109
Author(s): Bettina Glasl, David G. Bourne, Pedro R. Frade, Torsten Thomas, Britta Schaffelke, Nicole S. Webster
Software Mentions: 6
Published: about 7 years ago

10.3389/fimmu.2021.640190

Pre-existing Immunity to Japanese Encephalitis Virus Alters CD4 T Cell Responses to Zika Virus Inactivated Vaccine
Cited by: 7
Author(s): Noemia S. Lima, Damee Moon, Samuel Darko, Rafael A. De La Barrera, Leyi Lin, Michael Koren, Richard G. Jarman, Kenneth H. Eckels, Stephen J. Thomas, Nelson L. Michael, Kayvon Modjarrad, Daniel C. Douek, Lydie Trautmann
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.3897

Insectivorous bats respond to vegetation complexity in urban green spaces
Cited by: 25
Author(s): Marcela Suárez-Rubio, Christina Ille, Alexander Bruckner
Software Mentions: 6
Published: over 8 years ago

10.3389/fmicb.2019.02278

Assessment of Artificial and Natural Transport Mechanisms of Ice Nucleating Particles in an Alpine Ski Resort in Obergurgl, Austria
Cited by: 4
Author(s): Philipp Baloh, Nora Els, Robert O. David, Catherine Larose, Karin Whitmore, Birgit Sattler, Hinrich Grothe
Software Mentions: 6
Published: almost 7 years ago

10.1186/s40168-019-0781-8

Metagenomic analysis reveals the microbiome and resistome in migratory birds
Cited by: 96
Author(s): Jintao Cao, Yongfei Hu, Fei Liu, Yanan Wang, Yuhai Bi, Na Lv, Jing Li, Baoli Zhu, George F. Gao
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-018-21219-x

Interactions between predation and disturbances shape prey communities
Cited by: 22
Author(s): Canan Karakoç, Viktoriia Radchuk, Hauke Harms, Antonis Chatzinotas
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-021-87143-9

Stock delineation of striped snakehead, Channa striata using multivariate generalised linear models with otolith shape and chemistry data
Cited by: 3
Author(s): Sanaullah Khan, Hayden T. Schilling, Mohammad Afzal Khan, Devendra Kumar Patel, Ben Maslen, Kaish Miyan
Software Mentions: 6
Published: over 5 years ago

10.3390/insects12020135

Joint Impacts of Drought and Habitat Fragmentation on Native Bee Assemblages in a California Biodiversity Hotspot
Cited by: 9
Author(s): Keng‐Lou James Hung, Sara Sandoval, John S. Ascher, David A. Holway
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2019.01637

Characterization of Distinct CyanoHABs-Related Modules in Microbial Recurrent Association Network
Cited by: 30
Author(s): Seong-Jun Chun, Yingshun Cui, Chang‐Soo Lee, A Ra Cho, Kiwoon Baek, Jae‐Suk Choi, So-Ra Ko, Hyung-Gwan Lee, Seungwoo Hwang, Hee‐Mock Oh, Chi‐Yong Ahn
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-019-54098-x

Obesity during pregnancy results in maternal intestinal inflammation, placental hypoxia, and alters fetal glucose metabolism at mid-gestation
Cited by: 48
Author(s): Jessica G. Wallace, Christian J. Bellissimo, Erica Yeo, Yu Xia, Jim Petrik, Michael G. Surette, Dawn M. E. Bowdish, Deborah M. Sloboda
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmicb.2017.01530

Host Ecology Rather Than Host Phylogeny Drives Amphibian Skin Microbial Community Structure in the Biodiversity Hotspot of Madagascar
Cited by: 67
Author(s): Molly C. Bletz, Holly Archer, Reid N. Harris, Valerie J. McKenzie, Falitiana C. E. Rabemananjara, Andolalao Rakotoarison, Miguel Vences
Software Mentions: 6
Published: about 9 years ago

10.1371/journal.pone.0239681

The Znt7-null mutation has sex dependent effects on the gut microbiota and goblet cell population in the mouse colon
Cited by: 3
Author(s): Mary E. Kable, Niknaz Riazati, Catherine P. Kirschke, Junli Zhao, Surapun Tepaamorndech, Liping Huang
Software Mentions: 6
Published: almost 6 years ago

10.1186/s40168-018-0449-9

The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool
Cited by: 113
Author(s): Jo De Vrieze, Ameet J. Pinto, William T. Sloan, Umer Zeeshan Ijaz
Software Mentions: 6
Published: over 8 years ago

10.1264/jsme2.ME17170

Co-occurrence Network Reveals the Higher Fragmentation of the Bacterial Community in Kaidu River Than Its Tributaries in Northwestern China
Cited by: 22
Author(s): Yang Hu, Chengrong Bai, Jian Cai, Jiangyu Dai, Kwang‐Tsao Shao, Xiangming Tang, Guang Gao
Software Mentions: 6
Published: over 8 years ago

10.3389/fmicb.2020.571983

Large Enrichment of Anthropogenic Organic Matter Degrading Bacteria in the Sea-Surface Microlayer at Coastal Livingston Island (Antarctica)
Cited by: 12
Author(s): Alícia Martinez-Varela, Gemma Casas, Benjamı́n Piña, Jordi Dachs, Maria Vila‐Costa
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2020.594890

Soil Organic Carbon Attenuates the Influence of Plants on Root-Associated Bacterial Community
Cited by: 6
Author(s): Zhihui Yang, Qing Yao, Honghui Zhu
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41438-018-0090-6

Genetic characterization of worldwide Prunus domestica (plum) germplasm using sequence-based genotyping
Cited by: 50
Author(s): Tetyana Zhebentyayeva, Vijay Shankar, R. Scorza, Ann M. Callahan, Michel Ravelonandro, Sarah Castro, Theodore M. DeJong, Christopher Saski, Chris Dardick
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-018-20515-w

Exploring coral microbiome assemblages in the South China Sea
Cited by: 24
Author(s): Chunye Lin, Ren Mao Tian, Guowei Zhou, Haoya Tong, Yue Him Wong, Weipeng Zhang, Apple Pui Yi Chui, James Y. Xie, Jian‐Wen Qiu, Put O. Ang, Sheng Liu, Hui Huang, Pei‐Yuan Qian
Software Mentions: 6
Published: over 8 years ago

10.3389/fmicb.2019.02571

The Skin Microbiota of Eleutherodactylus Frogs: Effects of Host Ecology, Phylogeny, and Local Environment
Cited by: 9
Author(s): Liza Garcia-Recinos, Patricia A. Burrowes, María Gloria Domínguez-Bello
Software Mentions: 6
Published: almost 7 years ago

10.3390/nu13092983

Supplementation of 1-Kestose Modulates the Gut Microbiota Composition to Ameliorate Glucose Metabolism in Obesity-Prone Hosts
Cited by: 10
Author(s): Ayako Watanabe, Takumi Tochio, Yasuhiro Kadota, Motoki Takahashi, Yasuyuki Kitaura, H. Ishikawa, Takanori Yasutake, Masahiro Nakano, Hiroe Shinohara, Toru Kudo, Yuichiro Nishimoto, Yoshinori Mizuguchi, Akihito Endo, Yoshiharu Shimomura
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2018.00651

How Does Salinity Shape Bacterial and Fungal Microbiomes of Alnus glutinosa Roots?
Cited by: 53
Author(s): Dominika Thiem, Marcin Gołębiewski, Piotr Hulisz, Agnieszka Piernik, Katarzyna Hrynkiewicz
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-020-57474-0

Rejection of the genetic implications of the “Abundant Centre Hypothesis” in marine mussels
Cited by: 18
Author(s): Noxolo N. Ntuli, Katy R. Nicastro, Gerardo I. Zardi, Jorge Assis, Christopher D. McQuaid, Peter R. Teske
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-90735-0

Distinct microbial community along the chronic oil pollution continuum of the Persian Gulf converge with oil spill accidents
Cited by: 16
Author(s): Maryam Rezaei Somee, Seyed Mohammad Mehdi Dastgheib, Mahmoud Shavandi, Leila Ghanbari Maman, Kaveh Kavousi, Mohammad Ali Amoozegar, Maliheh Mehrshad
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-019-52148-y

Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil
Cited by: 64
Author(s): Vanessa Brisson, Jennifer E. Schmidt, Trent Northen, John P. Vogel, Amélie C. M. Gaudin
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0246656

Carbon fixation and rhodopsin systems in microbial mats from hypersaline lakes Brava and Tebenquiche, Salar de Atacama, Chile
Cited by: 10
Author(s): Daniel Kurth, Darío Elías, María Cecilia Rasuk, Manuel Contreras, Marı́a Eugenia Farı́as
Software Mentions: 6
Published: over 5 years ago

10.3390/nu13030807

Transient Effect of Infant Formula Supplementation on the Intestinal Microbiota
Cited by: 6
Author(s): Ning Chin, Gema Méndez-Lagares, Diana H. Taft, Victoria Laleau, Hung T. Kieu, Narayan Nicole, Susan B. Roberts, David A. Mills, Dennis J. Hartigan-O’Connor, Valerie J. Flaherman
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0197286

The importance of artificial wetlands for birds: A case study from Cyprus
Cited by: 30
Author(s): Efthymia Giosa, Christos Mammides, Savvas Zotos
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0196130

Aridity drives plant biogeographical sub regions in the Caatinga, the largest tropical dry forest and woodland block in South America
Cited by: 51
Author(s): Augusto C. Silva, Alexandre F. Souza
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-021-89950-6

Metabarcoding Malaise traps and soil eDNA reveals seasonal and local arthropod diversity shifts
Cited by: 15
Author(s): Ameli Kirse, Sarah J. Bourlat, Kathrin Langen, Vera G. Fonseca
Software Mentions: 6
Published: over 5 years ago

10.3389/fcell.2020.582320

Microbiome Profiling Reveals Gut Dysbiosis in the Metabotropic Glutamate Receptor 5 Knockout Mouse Model of Schizophrenia
Cited by: 15
Author(s): Carolina Gubert, Geraldine Kong, Volkan Uzungil, Ariel M Zeleznikow-Johnston, Emma L. Burrows, Thibault Renoir, Anthony J Hannan
Software Mentions: 6
Published: almost 6 years ago

10.3390/pathogens10040396

Nanopore-Sequencing Characterization of the Gut Microbiota of Melolontha melolontha Larvae: Contribution to Protection against Entomopathogenic Nematodes?
Cited by: 4
Author(s): Ewa Sajnaga, Marcin Skowronek, Agnieszka Kalwasińska, Waldemar Kazimierczak, Karolina Ferenc, Magdalena Lis, Adrian Wiater
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2021.675693

Nitrogen Fertilization and Native C4 Grass Species Alter Abundance, Activity, and Diversity of Soil Diazotrophic Communities
Cited by: 10
Author(s): Jialin Hu, Jonathan D. Richwine, Patrick D. Keyser, Lidong Li, Fei Yao, Sindhu Jagadamma, Jennifer M. DeBruyn
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2020.574110

Phytophthora Root Rot Modifies the Composition of the Avocado Rhizosphere Microbiome and Increases the Abundance of Opportunistic Fungal Pathogens
Cited by: 28
Author(s): Itzel A. Solís-García, Oscar Ceballos-Luna, Elvis Marian Cortazar-Murillo, Damaris Desgarennes, Edith Garay‐Serrano, Violeta Patiño-Conde, Edgar Guevara-Avendaño, Alfonso Méndez-Bravo, Frédérique Reverchon
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2018.01202

Relationships Between Gastrointestinal Parasite Infections and the Fecal Microbiome in Free-Ranging Western Lowland Gorillas
Cited by: 15
Author(s): Klára Vlčková, Barbora Pafčo, Klára J. Petrželková, David Modrý, Angelique Todd, Carl J. Yeoman, Manolito Torralba, Brenda A. Wilson, Rebecca M. Stumpf, Bryan A. White, Karen E. Nelson, Steven R. Leigh, Andrés Gómez
Software Mentions: 6
Published: over 8 years ago

10.3389/fmicb.2020.526545

Nutrients and Pharmaceuticals Structure Bacterial Core Communities in Urban and Montane Stream Biofilms
Cited by: 4
Author(s): Elizabeth M. Ogata, Michelle A. Baker, Emma J. Rosi, Trevor B. Smart, Donald Long, Zachary T. Aanderud
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-019-52549-z

Rectal swabs are a reliable proxy for faecal samples in infant gut microbiota research based on 16S-rRNA sequencing
Cited by: 29
Author(s): Marta Reyman, Marlies A. van Houten, Kayleigh Arp, Elisabeth A. M. Sanders, Debby Bogaert
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmicb.2018.00387

The Intestinal Mycobiota in Wild Zebrafish Comprises Mainly Dothideomycetes While Saccharomycetes Predominate in Their Laboratory-Reared Counterparts
Cited by: 23
Author(s): Prabhugouda Siriyappagouder, Viswanath Kiron, Jep Lokesh, Moger Rajeish, Martina Kopp, Jorge M. O. Fernandes
Software Mentions: 6
Published: over 8 years ago

10.3389/fmicb.2017.01452

Watershed Urbanization Linked to Differences in Stream Bacterial Community Composition
Cited by: 88
Author(s): Jacob D. Hosen, Catherine M. Febria, Byron C. Crump, Margaret A. Palmer
Software Mentions: 6
Published: about 9 years ago

10.3389/fnut.2019.00045

What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study
Cited by: 135
Author(s): Kimberly A. Lackey, Janet E. Williams, Courtney L. Meehan, Jessica A. Zachek, Elizabeth D. Benda, William J. Price, James A. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Debela Gindola K, Linda J. Kvist, Gloria E. Otoo, Cristina García-Carral, Esther Jiménez, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Lars Bode, Mark A. McGuire, Michelle K. McGuire
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0221408

Distinct temporal dynamics of planktonic archaeal and bacterial assemblages in the bays of the Yellow Sea
Cited by: 16
Author(s): Jong-Geol Kim, Joo-Han Gwak, Man‐Young Jung, Sung‐Uk An, Jung‐Ho Hyun, Sanghoon Kang, Sung‐Keun Rhee
Software Mentions: 6
Published: about 7 years ago

10.1186/s40168-021-01150-6

Gammaproteobacteria, a core taxon in the guts of soil fauna, are potential responders to environmental concentrations of soil pollutants
Cited by: 40
Author(s): Qi Zhang, Zhenyan Zhang, Tao Lu, Yitian Yu, Josep Peñuelas, Yan Zhu, Haifeng Qian
Software Mentions: 6
Published: almost 5 years ago

10.3389/fcimb.2018.00020

Genetic Separation of Listeria monocytogenes Causing Central Nervous System Infections in Animals
Cited by: 20
Author(s): Lisandra Aguilar-Bultet, Pamela Nicholson, Lorenz Rychener, Margaux Dreyer, Bulent Gözel, Francesco C. Origgi, Anna Oevermann, Joachim Frey, Laurent Falquet
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0235159

Zooplankton biogeographic boundaries in the California Current System as determined from metabarcoding
Cited by: 13
Author(s): Kathleen J. Pitz, Jinchen Guo, Shannon B. Johnson, Tracy L. Campbell, Haibin Zhang, Robert C. Vrijenhoek, Francisco P. Chávez, Jonathan B. Geller
Software Mentions: 6
Published: about 6 years ago

10.1098/rstb.2019.0242

Phylogenetic conservation of soil bacterial responses to simulated global changes
Cited by: 41
Author(s): Kazuo Isobe, Nicholas J. Bouskill, Eoin L. Brodie, Erika A. Sudderth, Jennifer B. H. Martiny
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0109581

Correlates of Zooplankton Beta Diversity in Tropical Lake Systems
Cited by: 69
Author(s): Paloma M. Lopes, Luis Maurício Bini, Steven Declerck, Vinicius F. Farjalla, Ludgero Cardoso Galli Vieira, Cláudia Cósta Bonecker, Fábio Amodêo Lansac‐Tôha, Francisco A. Esteves, Reinaldo Luiz Bozelli
Software Mentions: 6
Published: almost 12 years ago

10.1186/s40168-019-0686-6

Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets
Cited by: 32
Author(s): Anukriti Sharma, Miles Richardson, Lauren Cralle, Christopher E. Stamper, Juan P. Maestre, Kelly A. Stearns‐Yoder, Teodor T. Postolache, Katherine L Bates, Kerry A. Kinney, Lisa A. Brenner, Christopher A. Lowry, Jack A. Gilbert, Andrew J. Hoisington
Software Mentions: 6
Published: over 7 years ago

10.1002/ece3.4745

Landscape genetics reveal broad and fine‐scale population structure due to landscape features and climate history in the northern leopard frog (<i>Rana pipiens</i>) in North Dakota
Cited by: 13
Author(s): Justin M. Waraniak, Justin D. L. Fisher, Kevin M. Purcell, David Mushet, Craig A. Stockwell
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-021-99441-3

Potential impacts of polymetallic nodule removal on deep-sea meiofauna
Cited by: 8
Author(s): Ellen Pape, Tânia Campinas Bezerra, Hendrik Gheerardyn, Marius Buydens, Amanda Kieswetter, Ann Vanreusel
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0151895

Patterns of Species Richness and Turnover for the South American Rodent Fauna
Cited by: 57
Author(s): Renan Maestri, Bruce D. Patterson
Software Mentions: 6
Published: over 10 years ago

10.3390/ijms21176441

Hyperspectral Reflectance of Light-Adapted Leaves Can Predict Both Dark- and Light-Adapted Chl Fluorescence Parameters, and the Effects of Chronic Ozone Exposure on Date Palm (Phoenix dactylifera)
Cited by: 18
Author(s): Lorenzo Cotrozzi, Giacomo Lorenzini, Cristina Nali, Elisa Pellegrini, Vincenzo Saponaro, Yasutomo Hoshika, Leila Arab, Heinz Rennenberg, Elena Paoletti
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0173340

Prioritising surveillance for alien organisms transported as stowaways on ships travelling to South Africa
Cited by: 19
Author(s): Katelyn T. Faulkner, Mark P. Robertson, Mathieu Rouget, John R. Wilson
Software Mentions: 6
Published: over 9 years ago

10.3390/insects11060351

Limited Effect of Management on Apple Pollination: A Case Study from an Oceanic Island
Cited by: 7
Author(s): Adara Pardo, David H. Lopes, Natalia Fierro, Paulo A. V. Borges
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-019-56074-x

Metagenomic analysis of dental calculus in ancient Egyptian baboons
Cited by: 20
Author(s): Claudio Ottoni, Meriam Guellil, Andrew T. Ozga, Anne C. Stone, Oliver Kersten, Barbara Bramanti, Stéphanie Porcier, Wim Van Neer
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0101556

Diversity, Abundance and Community Structure of Benthic Macro- and Megafauna on the Beaufort Shelf and Slope
Cited by: 21
Author(s): Jessica Nephin, S. Kim Juniper, Philippe Archambault
Software Mentions: 6
Published: about 12 years ago

10.1038/s41598-019-51786-6

Restructuring of the ‘Macaronesia’ biogeographic unit: A marine multi-taxon biogeographical approach
Cited by: 76
Author(s): Rui Freitas, Maria M. Romeiras, Luís Silva, Ricardo Cordeiro, Patrícia Madeira, José A. González, Peter Wirtz, Jésus J.M. Falcón, Alberto Brito, Sergio R. Floeter, Pedro Afonso, Filipe M. Porteiro, María Ascensión Viera-Rodríguez, Ana I. Neto, Ricardo Haroun, João N.M. Farminhão, Ana Cristina Rebelo, Lara Baptista, Carlos Melo, Alejandro Junquera Martínez, Jorge Núñez, Björn Berning, Markes M.E. Johnson, Sérgio P. Ávila
Software Mentions: 6
Published: almost 7 years ago

10.1186/s40462-021-00258-6

Behaviour-specific habitat selection patterns of breeding barn owls
Cited by: 11
Author(s): Robin Séchaud, Kim Schalcher, Ana Paula Machado, Bettina Almasi, Carolina Massa, Kamran Safi, Alexandre Roulin
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-93850-0

Morphological response accompanying size reduction of belemnites during an Early Jurassic hyperthermal event modulated by life history
Cited by: 5
Author(s): Paulina Nätscher, Guillaume Dera, Carl J. Reddin, Patrícia Rita, Kenneth De Baets
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2016.02064

Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System
Cited by: 177
Author(s): Manoeli Lupatini, G.W. Korthals, Mattias de Hollander, Thierry Janssens, Eiko E. Kuramae
Software Mentions: 6
Published: over 9 years ago

10.3390/microorganisms7120596

Dietary Saccharomyces cerevisiae boulardii CNCM I-1079 Positively Affects Performance and Intestinal Ecosystem in Broilers during a Campylobacter jejuni Infection
Cited by: 22
Author(s): Francesca Romana Massacci, Carmela Lovito, Silvia Tofani, Michele Tentellini, Domenica Anna Genovese, Alessia Arcangela Pia De Leo, Paola Papa, Chiara Francesca Magistrali, Elisabetta Manuali, Massimo Trabalza‐Marinucci, Livia Moscati, Claudio Forte
Software Mentions: 6
Published: almost 7 years ago

10.7554/eLife.53898

The skin microbiome facilitates adaptive tetrodotoxin production in poisonous newts
Cited by: 44
Author(s): Patric M Vaelli, Kevin R. Theis, Janet E. Williams, Lauren A. O’Connell, James A. Foster, Heather L. Eisthen
Software Mentions: 6
Published: over 6 years ago

10.1186/s13073-021-00844-8

The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries
Cited by: 21
Author(s): Caroline Young, Henry M. Wood, Ramakrishnan Ayloor Seshadri, Pham Van Nang, Carlos Vaccaro, Luis Contreras Melendez, Mayilvahanan Bose, Mai Van Doi, Tamara Alejandra Piñero, Camilo Tapia Valladares, Julieta Argüero, Alba Fuentes Balaguer, Kelsey N. Thompson, Yan Yan, Curtis Huttenhower, Philip Quirke
Software Mentions: 6
Published: over 5 years ago

10.1186/s13073-018-0586-6

Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers
Cited by: 96
Author(s): Vanessa L. Hale, Patricio Jeraldo, Jun Chen, Michael B. Mundy, Jingwen Yao, Sambhawa Priya, Gary Keeney, Kelly Lyke, Jason M. Ridlon, Bryan A. White, Amy J. French, Stephen N. Thibodeau, Christian Diener, Osbaldo Reséndis-Antonio, Jaime Gransee, Tumpa Dutta, Xuan Mai Petterson, Jaeyun Sung, Ran Blekhman, Lisa A. Boardman, David W. Larson, Heidi Nelson, Nicholas Chia
Software Mentions: 6
Published: almost 8 years ago

10.1128/mSystems.00100-17

Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients
Cited by: 11
Author(s): Stephen Wandro, Lisa A. Carmody, Tara Gallagher, John J. LiPuma, Katrine Whiteson
Software Mentions: 6
Published: over 8 years ago

10.1186/s13073-016-0322-z

B-cell repertoire dynamics after sequential hepatitis B vaccination and evidence for cross-reactive B-cell activation
Cited by: 55
Author(s): Jacob D. Galson, Johannes Trück, Elizabeth A. Clutterbuck, Anna Fowler, Vincenzo Cerundolo, Andrew J. Pollard, Gerton Lunter, Dominic F. Kelly
Software Mentions: 6
Published: about 10 years ago

10.1371/journal.pone.0243301

Response of oat morphologies, root exudates, and rhizosphere fungal communities to amendments in a saline-alkaline environment
Cited by: 5
Author(s): Peina Lu, Tony Yang, Lijun Li, Baoping Zhao, Jinghui Liu
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0218775

Birds vs bricks: Patterns of species diversity in response to urbanization in a Neotropical Andean city
Cited by: 24
Author(s): Juan D. Carvajal-Castro, Ana María Ospina-L, Yemay Toro-López, Anny Pulido-G, Laura Ximena Cabrera-Casas, Sebastián Guerrero-Peláez, Víctor Hugo García-Merchán, Fernando Vargas‐Salinas
Software Mentions: 6
Published: about 7 years ago

10.1186/s13059-020-02042-y

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
Cited by: 60
Author(s): Nicolai Karcher, Edoardo Pasolli, Francesco Asnicar, Kun Huang, Adrian Tett, Serena Manara, Federica Armanini, D. J. G. Bain, Sylvia H. Duncan, Petra Louis, Moreno Zolfo, Paolo Manghi, Mireia Vallès-Colomer, Roberta Raffaetà, Omar Rota‐Stabelli, María Carmen Collado, Georg Zeller, Daniel Falush, Frank Maixner, Alan W. Walker, Curtis Huttenhower, Nicola Segata
Software Mentions: 6
Published: over 6 years ago

10.7717/peerj.3270

Invasive lionfish had no measurable effect on prey fish community structure across the Belizean Barrier Reef
Cited by: 25
Author(s): Serena Hackerott, Abel Valdivia, Courtney Cox, Nyssa J. Silbiger, John F. Bruno
Software Mentions: 6
Published: over 9 years ago

10.3390/microorganisms7100473

Rapid Bacterial Community Changes during Vermicomposting of Grape Marc Derived from Red Winemaking
Cited by: 18
Author(s): María Gómez-Brandòn, Manuel Aira, Allison R. Kolbe, Nariane de Andrade, Marcos Pérez‐Losada, Jorge Domínguez
Software Mentions: 6
Published: almost 7 years ago

10.1128/mSystems.00043-17

The Skin Microbiome of Cohabiting Couples
Cited by: 86
Author(s): Ashley A. Ross, Andrew C. Doxey, Josh D. Neufeld
Software Mentions: 6
Published: about 9 years ago

10.7717/peerj.12135

Biogeography rather than substrate type determines bacterial colonization dynamics of marine plastics
Cited by: 9
Author(s): Ashley K. Coons, Kathrin Busch, Mark Lenz, Ute Hentschel, Erik Borchert
Software Mentions: 6
Published: about 5 years ago

10.1186/s13059-019-1908-8

Host-associated microbiomes are predicted by immune system complexity and climate
Cited by: 45
Author(s): Douglas C. Woodhams, Molly C. Bletz, C. Guilherme Becker, Hayden A. Bender, Daniel Buitrago-Rosas, Hannah Diebboll, Roger Huynh, Patrick J. Kearns, Jordan G. Kueneman, Emmi Kurosawa, Brandon LaBumbard, Casandra Lyons, Kerry McNally, Klaus Schliep, Nachiket Shankar, Amanda G. Tokash-Peters, Miguel Vences, Ross Whetstone
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0238396

Comparison between flaming, mowing and tillage weed control in the vineyard: Effects on plant community, diversity and abundance
Cited by: 22
Author(s): Matia Mainardis, Francesco Boscutti, Maria del Mar Rubio Cebolla, Gianfranco Pergher
Software Mentions: 6
Published: about 6 years ago

10.1186/s13059-019-1871-4

tmap: an integrative framework based on topological data analysis for population-scale microbiome stratification and association studies
Cited by: 17
Author(s): Tianhua Liao, Yuchen Wei, Mingjing Luo, Guoping Zhao, Haokui Zhou
Software Mentions: 6
Published: almost 7 years ago

10.1128/mSphere.00393-21

Multidimensional Clinical Surveillance of Pseudomonas aeruginosa Reveals Complex Relationships between Isolate Source, Morphology, and Antimicrobial Resistance
Cited by: 3
Author(s): Laura J. Dunphy, Glynis L. Kolling, Matthew L. Jenior, Joanne Carroll, April E Attai, Farzad Farnoud, Amy J Mathers, Molly A. Hughes, Jason A. Papin
Software Mentions: 6
Published: about 5 years ago

10.1186/s13059-018-1522-1

Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations
Cited by: 66
Author(s): Kristiina Tambets, Bayazit Yunusbayev, Georgi Hudjashov, Anne-Mai Ilumäe, Siiri Rootsi, Terhi Honkola, Outi Vesakoski, Quentin D. Atkinson, Pontus Skoglund, Alena Kushniarevich, Sergey Litvinov, Maere Reidla, Ene Metspalu, Lehti Saag, Timo Rantanen, Monika Karmin, Jüri Parik, Sergey I. Zhadanov, Marina Gubina, Л. Д. Дамба, Marina Bermisheva, Tuuli Reisberg, Khadizhat Dibirova, Irina Evseeva, Mari Nelis, Jānis Kloviņš, Andres Metspalu, Tõnu Esko, Oleg Balanovsky, Elena Balanovska, Elza Khusnutdinova, Ludmila P. Osipova, М. И. Воевода, Richard Villems, Toomas Kivisild, Mait Metspalu
Software Mentions: 6
Published: almost 8 years ago

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Papers Mentioning vegan 6,903