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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13073-018-0586-6

https://doi.org/10.1186/s13073-018-0586-6

Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers

Cited by: 96
Author(s): Vanessa L. Hale, Patricio Jeraldo, Jun Chen, Michael B. Mundy, Jingwen Yao, Sambhawa Priya, Gary Keeney, Kelly Lyke, Jason M. Ridlon, Bryan A. White, Amy J. French, Stephen N. Thibodeau, Christian Diener, Osbaldo Reséndis-Antonio, Jaime Gransee, Tumpa Dutta, Xuan Mai Petterson, Jaeyun Sung, Ran Blekhman, Lisa A. Boardman, David W. Larson, Heidi Nelson, Nicholas Chia
Published: over 6 years ago

Software Mentions 6

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
Very Likely Science (75)
cran: glmmTMB
Generalized Linear Mixed Models using Template Model Builder
Papers that mentioned: 373
Very Likely Science (100)
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
Very Likely Science (85)
cran: RDP
The Ramer-Douglas-Peucker Algorithm
Papers that mentioned: 1,243
Very Likely Science (85)
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
Very Likely Science (100)