cran: kernlab | Projects | Ecosyste.ms: Papers

10.3389/fcell.2020.577125

Development of a Metastasis-Related Immune Prognostic Model of Metastatic Colorectal Cancer and Its Usefulness to Immunotherapy
Cited by: 11
Author(s): Zhiwen Luo, Xiao Chen, Yefan Zhang, Zhen Huang, Hong Zhao, Jianjun Zhao, Zhiyu Li, Jianguo Zhou, Jianmei Liu, Jianqiang Cai, Xinyu Bi
Software Mentions: 26
Published: almost 4 years ago

10.1186/s13072-016-0095-z

EpiMINE, a computational program for mining epigenomic data
Cited by: 11
Author(s): Sri Ganesh Jammula, Diego Pasini
Software Mentions: 23
Published: about 8 years ago

10.1186/s13059-020-02100-5

Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data
Cited by: 56
Author(s): Nikolaus Fortelny, Christoph Bock
Software Mentions: 20
Published: over 4 years ago

10.1093/gigascience/giaa010

Interpretable and accurate prediction models for metagenomics data
Cited by: 29
Author(s): Edi Prifti, Yann Chevaleyre, Blaise Hanczar, Eugeni Belda, Antoine Danchin, Karine Clément, Jean-Daniel Zucker
Software Mentions: 18
Published: over 4 years ago

10.1371/journal.pntd.0007969

Severity Index for Suspected Arbovirus (SISA): Machine learning for accurate prediction of hospitalization in subjects suspected of arboviral infection
Cited by: 10
Author(s): Rachel Sippy, Daniel F. Farrell, Daniel A. Lichtenstein, Ryan Nightingale, Megan Harris, Joseph Toth, Paris Hantztidiamantis, Nicholas Usher, Cinthya Cueva Aponte, Julio Barzallo Aguilar, Anthony Puthumana, Christina D. Lupone, Timothy P. Endy, Sadie J. Ryan, Anna M. Stewart-Ibarra
Software Mentions: 16
Published: almost 5 years ago

10.21105/joss.03073

mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines
Cited by: 22
Author(s): Begüm D. Topçuoğlu, Zena Lapp, Kelly L Sovacool, Evan S. Snitkin, Jenna Wiens, Patrick D. Schloss
Software Mentions: 15
Published: over 3 years ago

10.1371/journal.pone.0018850

Multiplexed Immunoassay Panel Identifies Novel CSF Biomarkers for Alzheimer's Disease Diagnosis and Prognosis
Cited by: 199
Author(s): Rebecca Craig‐Schapiro, Max Kühn, Chengjie Xiong, Eve H. Pickering, Jingxia Liu, Thomas P. Misko, Richard J. Perrin, Kelly R. Bales, Holly Soares, Anne M. Fagan, David M. Holtzman
Software Mentions: 15
Published: over 13 years ago

10.3390/jcm7100322

Derivation and Validation of Machine Learning Approaches to Predict Acute Kidney Injury after Cardiac Surgery
Cited by: 100
Author(s): Hyung Chul Lee, Hyun Kyu Yoon, Karam Nam, Youn Joung Cho, Tae Kyoung Kim, Won Ho Kim, Jae Hyon Bahk
Software Mentions: 12
Published: about 6 years ago

10.1186/s12911-017-0500-y

Predicting two-year survival versus non-survival after first myocardial infarction using machine learning and Swedish national register data
Cited by: 53
Author(s): John Wallert, Mattia Tomasoni, Guy Madison, Claes Held
Software Mentions: 12
Published: over 7 years ago

10.1186/s13321-017-0215-1

ChemSAR: an online pipelining platform for molecular SAR modeling
Cited by: 39
Author(s): Jie Dong, Zhi Jiang Yao, Min Zhu, Ning Ning Wang, Ben Lü, Alex F. Chen, Ai Ping Lu, Hongyu Miao, Wen Zeng, Dong Sheng Cao
Software Mentions: 11
Published: over 7 years ago

10.3390/diagnostics11081517

Prediction Model for Tumor Budding Status Using the Radiomic Features of F-18 Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography in Cervical Cancer
Cited by: 5
Author(s): Gun Oh Chong, Shin‐Hyung Park, Shin Young Jeong, Su Jeong Kim, Nora Jee-Young Park, Yoon Hee Lee, Sang‐Woo Lee, Dae Gy Hong, Ji Young Park, Hyung Soo Han
Software Mentions: 11
Published: over 3 years ago

10.1155/2017/7907163

A Multicriteria Approach to Find Predictive and Sparse Models with Stable Feature Selection for High-Dimensional Data
Cited by: 11
Author(s): Andrea Bommert, Jörg Rahnenführer, Michel Lang
Software Mentions: 11
Published: almost 8 years ago

10.1038/s41598-020-75476-w

Mass wasting susceptibility assessment of snow avalanches using machine learning models
Cited by: 44
Author(s): Bahram Choubin, Moslem Borji, Farzaneh Sajedi Hosseini, Amir Mosavi, Adrienn Dineva
Software Mentions: 10
Published: about 4 years ago

10.1186/1471-2105-8-457

GEDI: a user-friendly toolbox for analysis of large-scale gene expression data
Cited by: 11
Author(s): André Fujita, João Ricardo Sato, Carlos Eduardo Ferreira, Mari Cleide Sogayar
Software Mentions: 10
Published: about 17 years ago

10.1371/journal.pone.0215142

Mathematical modeling for the prediction of cerebral white matter lesions based on clinical examination data
Cited by: 7
Author(s): Yuya Shinkawa, Takashi Yoshida, Yohei Onaka, Makoto Ichinose, Kazuo Ishii
Software Mentions: 10
Published: over 5 years ago

10.1186/s13071-018-3066-3

Modelling the spatial distribution of aquatic insects (Order Hemiptera) potentially involved in the transmission of Mycobacterium ulcerans in Africa
Cited by: 9
Author(s): Jorge Cano, Antonio Rodrı́guez Rodrı́guez, Hamish Simpson, Earnest Njih Tabah, José Luís Graña Gómez, Rachel L. Pullan
Software Mentions: 10
Published: about 6 years ago

10.3389/fnagi.2018.00144

Differentiating Patients at the Memory Clinic With Simple Reaction Time Variables: A Predictive Modeling Approach Using Support Vector Machines and Bayesian Optimization
Cited by: 9
Author(s): John Wallert, Eric Westman, Johnny Ulinder, Mathilde Annerstedt, Beata Terzis, Urban Ekman
Software Mentions: 10
Published: over 6 years ago

10.1186/s13321-015-0094-2

RRegrs: an R package for computer-aided model selection with multiple regression models
Cited by: 40
Author(s): Georgia Tsiliki, Cristian R. Munteanu, José A. Seoane, Carlos Fernández-Lozano, Haralambos Sarimveis, Egon Willighagen
Software Mentions: 10
Published: about 9 years ago

10.1038/s41598-021-81110-0

G-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomes
Cited by: 9
Author(s): Françoise Le Borgne, Arthur Chatton, Maxime Léger, Rémi Lenain, Yohann Foucher
Software Mentions: 10
Published: almost 4 years ago

10.1038/s41598-019-50480-x

Early Prediction of Soybean Traits through Color and Texture Features of Canopy RGB Imagery
Cited by: 21
Author(s): Wenan Yuan, Nuwan K. Wijewardane, Shawn Jenkins, Geng Bai, Yufeng Ge, George L. Graef
Software Mentions: 9
Published: about 5 years ago

10.1371/journal.pcbi.1007276

Benchmarking network propagation methods for disease gene identification
Cited by: 29
Author(s): Sergio Picart‐Armada, Steven J. Barrett, David Willé, Alexandre Perera-Lluna, Alex Gutteridge, Benoît H. Dessailly
Software Mentions: 9
Published: about 5 years ago

10.3389/fcell.2021.671359

Identification and Validation of a Novel Prognosis Prediction Model in Adrenocortical Carcinoma by Integrative Bioinformatics Analysis, Statistics, and Machine Learning
Cited by: 3
Author(s): Xin Yan, Zixin Guo, Donghu Yu, Chen Chen, Xiaoping Li, Zhiwei Yang, Tong-Zu Liu, Sheng Li
Software Mentions: 9
Published: over 3 years ago

10.3389/fpsyt.2019.00041

A Data Science-Based Analysis Points at Distinct Patterns of Lipid Mediator Plasma Concentrations in Patients With Dementia
Cited by: 6
Author(s): Robert Gurke, Semra Etyemez, David Prvulovic, Dominique Thomas, Stefanie C. Fleck, Andreas Reif, Gerd Geißlinger, Jörn Lötsch
Software Mentions: 9
Published: almost 6 years ago

10.3390/e21050513

Mimicking Anti-Viruses with Machine Learning and Entropy Profiles
Cited by: 10
Author(s): Héctor D. Menéndez, José Luís Llorente
Software Mentions: 9
Published: over 5 years ago

10.1371/journal.pone.0071218

Novel Three-Step Pseudo-Absence Selection Technique for Improved Species Distribution Modelling
Cited by: 137
Author(s): Senait D. Senay, Susan P. Worner, Takayoshi Ikeda
Software Mentions: 9
Published: over 11 years ago

10.1534/g3.114.010298

Parametric and Nonparametric Statistical Methods for Genomic Selection of Traits with Additive and Epistatic Genetic Architectures
Cited by: 132
Author(s): Réka Howard, Alicia L. Carriquiry, William D. Beavis
Software Mentions: 8
Published: over 10 years ago

10.1038/s41389-019-0157-8

DeepCC: a novel deep learning-based framework for cancer molecular subtype classification
Cited by: 119
Author(s): Feng Gao, Wei Wang, Miaomiao Tan, Lina Zhu, Yuchen Zhang, Evelyn Fessler, Louis Vermeulen, Xin Wang
Software Mentions: 8
Published: over 5 years ago

10.12688/wellcomeopenres.14847.1

Using machine learning to guide targeted and locally-tailored empiric antibiotic prescribing in a children's hospital in Cambodia
Cited by: 45
Author(s): Mathupanee Oonsivilai, Yin Mo, Nantasit Luangasanatip, Yoel Lubell, Thyl Miliya, Pisey Tan, Lorn Loeuk, Paul Turner, Ben S. Cooper
Software Mentions: 8
Published: about 6 years ago

10.1007/s11571-020-09645-y

Construction of embedded fMRI resting-state functional connectivity networks using manifold learning
Cited by: 12
Author(s): Ioannis Gallos, Evangelos Galaris, Constantinos Siettos
Software Mentions: 8
Published: about 4 years ago

10.3390/plants10081512

Floral Scent Evolution in the Genus Jaborosa (Solanaceae): Influence of Ecological and Environmental Factors
Cited by: 6
Author(s): Marcela Moré, Florencia Soteras, Ana C. Ibañez, Stefan Dötterl, Andrea A. Cocucci, Robert A. Raguso
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pone.0185528

tsiR: An R package for time-series Susceptible-Infected-Recovered models of epidemics
Cited by: 38
Author(s): Alexander D. Becker, Bryan T. Grenfell
Software Mentions: 8
Published: about 7 years ago

10.1038/srep30086

Random Bits Forest: a Strong Classifier/Regressor for Big Data
Cited by: 22
Author(s): Yi Wang, Li Yi, Weilin Pu, Kathryn Wen, Yin Yao Shugart, Momiao Xiong, Li Jin
Software Mentions: 8
Published: over 8 years ago

10.1186/s12864-019-6275-z

Genome-wide association study and genomic selection for soybean chlorophyll content associated with soybean cyst nematode tolerance
Cited by: 29
Author(s): Waltram Ravelombola, Jun Qin, Ainong Shi, Liana Nice, Yong Bao, Aaron J. Lorenz, J. H. Orf, Nevin D. Young, Senyu Chen
Software Mentions: 7
Published: almost 5 years ago

10.1007/s10994-019-05848-5

An evaluation of machine-learning for predicting phenotype: studies in yeast, rice, and wheat
Cited by: 79
Author(s): Nastasiya F. Grinberg, Oghenejokpeme I. Orhobor, Ross D. King
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0183933

Tensor decomposition-based unsupervised feature extraction applied to matrix products for multi-view data processing
Cited by: 24
Author(s): Y-h. Taguchi
Software Mentions: 7
Published: about 7 years ago

10.3390/metabo9020024

Metabolic Alterations in Male-Sterile Potato as Compared to Male-Fertile
Cited by: 13
Author(s): М. Ф. Шишова, Roman Puzanskiy, О. А. Гаврилова, Shamuhommed Kurbanniazov, Kirill N. Demchenko, Vladislav V. Yemelyanov, Galina Pendinen, А. Л. Шаварда, Т. А. Гавриленко
Software Mentions: 7
Published: almost 6 years ago

10.3390/ijerph18020565

Does Last Year’s Cost Predict the Present Cost? An Application of Machine Leaning for the Japanese Area-Basis Public Health Insurance Database
Cited by: 4
Author(s): Yasuo Nomura, Yoshimasa Ishii, Yota Chiba, Shunsuke Suzuki, Akira Suzuki, Senichi Suzuki, Kenji Morita, Joji Tanabe, Koji Yamakawa, Yasuo Ishiwata, Misao Ishikawa, Kaoru Sogabe, Erika Kakuta, Ayako Okada, Ryoko Otsuka, Nobuhiro Hanada
Software Mentions: 7
Published: almost 4 years ago

10.1038/s41598-017-02365-0

CarcinoPred-EL: Novel models for predicting the carcinogenicity of chemicals using molecular fingerprints and ensemble learning methods
Cited by: 120
Author(s): Li Zhang, Haixin Ai, Wen Chen, Zimo Yin, Huan Hu, Jü Zhu, Zhao Jian, Qi Zhao, Huan Liu
Software Mentions: 7
Published: over 7 years ago

10.1186/1758-2946-6-35

Proteochemometric modeling in a Bayesian framework
Cited by: 39
Author(s): Isidro Cortés-Ciriano, Gerard J. P. van Westen, Eelke B. Lenselink, Daniel S. Murrell, Andreas Bender, Thérèse E. Malliavin
Software Mentions: 7
Published: over 10 years ago

10.3390/electronics9010099

Weighted Random Forests to Improve Arrhythmia Classification
Cited by: 21
Author(s): Krzysztof Gajowniczek, Iga Grzegorczyk, Tomasz Ząbkowski, Chandrajit L. Bajaj
Software Mentions: 7
Published: almost 5 years ago

10.34133/2020/3729715

Repeated Multiview Imaging for Estimating Seedling Tiller Counts of Wheat Genotypes Using Drones
Cited by: 21
Author(s): Lukas Roth, Moritz Paul Camenzind, Helge Aasen, Lukas Kronenberg, Christoph Barendregt, Karl‐Heinz Camp, Achim Walter, Norbert Kirchgeßner, Andreas Hund
Software Mentions: 7
Published: almost 5 years ago

10.3390/healthcare9030317

Automatic Evaluation of Heart Condition According to the Sounds Emitted and Implementing Six Classification Methods
Cited by: 5
Author(s): Manuel A. Soto-Murillo, Jorge I. Galván-Tejada, Carlos E. Galván-Tejada, José M. Celaya-Padilla, Huizilopoztli Luna-García, Rafael Magallanes‐Quintanar, Tania A. Gutiérrez-García, Hamurabi Gamboa-Rosales
Software Mentions: 6
Published: over 3 years ago

10.1007/s00330-018-5680-z

Multiparametric ultrasomics of significant liver fibrosis: A machine learning-based analysis
Cited by: 82
Author(s): Wei Li, Yang Huang, Bowen Zhuang, Guangjian Liu, Hang-Tong Hu, Xin Li, Jin-Yu Liang, Zhu Wang, Xiaowen Huang, Chu-Qing Zhang, Si-Min Ruan, Xiaoyan Xie, Ming Kuang, Ming‐De Lu, Li-Da Chen, Wei Wang
Software Mentions: 6
Published: about 6 years ago

10.3389/fgene.2016.00145

A Unified and Comprehensible View of Parametric and Kernel Methods for Genomic Prediction with Application to Rice
Cited by: 13
Author(s): Laval Jacquin, Tuong-Vi Cao, Nourollah Ahmadi
Software Mentions: 6
Published: over 8 years ago

10.1155/2021/9591670

Machine Learning-Based Ensemble Model for Zika Virus T-Cell Epitope Prediction
Cited by: 31
Author(s): Syed Nisar Hussain Bukhari, Amit Jain, Ehtishamul Haq, Moaiad Ahmad Khder, Rahul Neware, Jyoti Bhola, Moslem Lari Najafi
Software Mentions: 6
Published: about 3 years ago

10.1093/ve/vew029

Reconstructing contact network parameters from viral phylogenies
Cited by: 11
Author(s): Rosemary M. McCloskey, Richard Liang, Art F. Y. Poon
Software Mentions: 6
Published: over 8 years ago

10.3390/s19204496

Simultaneous Assessment of Urinary and Fecal Volatile Organic Compound Analysis in De Novo Pediatric IBD
Cited by: 9
Author(s): Sofia el Manouni el Hassani, Sofie Bosch, Jesse P. M. Lemmen, Marina Brizzio Brentar, Ibrahim Ayada, Alfian Wicaksono, James A. Covington, Marc A. Benninga, Nanne K. H. de Boer, Tim G. J. de Meij
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0205291

CytoBinning: Immunological insights from multi-dimensional data
Cited by: 1
Author(s): Yang Shen, Benjamin Chaigne-Delalande, Richard W. Lee, Wolfgang Losert
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0186025

Using worldwide edaphic data to model plant species niches: An assessment at a continental extent
Cited by: 67
Author(s): Santiago José Elías Velazco, Franklin Galvão, Fabricio Villalobos, Paulo de Marco Júnior
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0156895

A Comparative Study of Five Association Tests Based on CpG Set for Epigenome-Wide Association Studies
Cited by: 14
Author(s): Qiuyi Zhang, Yang Zhao, Ruyang Zhang, Yongyue Wei, Honggang Yi, Fang Shao, Feng Chen
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0179180

Rigid geometry solves “curse of dimensionality” effects in clustering methods: An application to omics data
Cited by: 12
Author(s): Shun Adachi
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0252096

Application of multi-omics data integration and machine learning approaches to identify epigenetic and transcriptomic differences between in vitro and in vivo produced bovine embryos
Cited by: 9
Author(s): María Belén Rabaglino, Alan M. O’Doherty, Jan Bojsen-Møller Secher, Patrick Lonergan, Poul Hyttel, Trudee Fair, Haja N. Kadarmideen
Software Mentions: 6
Published: over 3 years ago

10.1001/jamanetworkopen.2021.7737

Predictors of 30-Day Mortality Among Dutch Patients Undergoing Colorectal Cancer Surgery, 2011-2016
Cited by: 31
Author(s): Tom van den Bosch, A. K. Warps, Michael P.M. de Neree tot Babberich, C Stamm, Bart F. Geerts, Louis Vermeulen, Michel W.J.M. Wouters, Jan Willem T. Dekker, Rob A.E.M. Tollenaar, Pieter J. Tanis, Daniël M. Miedema, Dutch ColoRectal Audit
Software Mentions: 6
Published: over 3 years ago

10.1038/s41398-019-0638-8

Implementing machine learning in bipolar diagnosis in China
Cited by: 10
Author(s): Yantao Ma, Jun Ji, Yun Huang, Huimin Gao, Zhiying Li, Wei Dong, Shuzhe Zhou, Yue Zhu, Weimin Dang, Tianhang Zhou, Haiqing Yu, Bin Yu, Yuefeng Long, Long Liu, Gary S. Sachs, Xinguang Yu
Software Mentions: 5
Published: about 5 years ago

10.1136/bmjgh-2018-000730

Predicted distribution and burden of podoconiosis in Cameroon
Cited by: 19
Author(s): Kebede Deribe, Jorge Cano, Abdel Jélil Njouendou, Mathias Esum Eyong, Amuam Andrew Beng, Emanuele Giorgi, David M. Pigott, Rachel L. Pullan, Abdisalan M. Noor, Fikre Enquselassie, Christopher J L Murray, Simon I. Hay, Melanie J. Newport, Gail Davey, Samuel Wanji
Software Mentions: 5
Published: over 6 years ago

10.2196/24348

Monitoring Information-Seeking Patterns and Obesity Prevalence in Africa With Internet Search Data: Observational Study
Cited by: 6
Author(s): Olubusola Oladeji, Chi Zhang, Tiam Moradi, Dharmesh Tarapore, Andrew Stokes, Vukosi Marivate, Moinina David Sengeh, Elaine O. Nsoesie
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0220881

Comparison of catchment scale 3D and 2.5D modelling of soil organic carbon stocks in Jiangxi Province, PR China
Cited by: 17
Author(s): Tobias Rentschler, Philipp Gries, Thorsten Behrens, Helge Bruelheide, Peter Kühn, Steffen Seitz, Xuezheng Shi, Stefan Trogisch, Thomas Scholten, Karsten Schmidt
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.7841

Evaluating remote sensing datasets and machine learning algorithms for mapping plantations and successional forests in Phnom Kulen National Park of Cambodia
Cited by: 8
Author(s): Minerva Singh, Damian Evans, Jean-Baptiste Chevance, Boun Suy Tan, Nicholas Wiggins, Leaksmy Kong, Sakada Sakhoeun
Software Mentions: 5
Published: about 5 years ago

10.1186/s13148-019-0772-4

Machine-learned analysis of global and glial/opioid intersection–related DNA methylation in patients with persistent pain after breast cancer surgery
Cited by: 10
Author(s): Dario Kringel, Mari A. Kaunisto, Eija Kalso, Jörn Lötsch
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0062495

SNP Set Association Analysis for Genome-Wide Association Studies
Cited by: 12
Author(s): Min Cai, Hui Dai, Yongyong Qiu, Yang Zhao, Ruyang Zhang, Minjie Chu, Juncheng Dai, Zhibin Hu, Hongbing Shen, Feng Chen
Software Mentions: 5
Published: over 11 years ago

10.1038/s41598-020-72988-3

Machine learning approach to integrated endometrial transcriptomic datasets reveals biomarkers predicting uterine receptivity in cattle at seven days after estrous
Cited by: 10
Author(s): María Belén Rabaglino, Haja N. Kadarmideen
Software Mentions: 5
Published: about 4 years ago

10.1186/s13073-021-00952-5

Distinct transcriptional programs stratify ovarian cancer cell lines into the five major histological subtypes
Cited by: 39
Author(s): Bethany Barnes, Louisa Nelson, Anthony Tighe, George J. Burghel, I‐Hsuan Lin, Sudha Desai, Joanne C. McGrail, Robert D. Morgan, Stephen S. Taylor
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0100736

Structure-Based Prediction of Asparagine and Aspartate Degradation Sites in Antibody Variable Regions
Cited by: 125
Author(s): Jasmin F. Sydow, Florian Lipsmeier, Vincent Larraillet, Maximiliane Hilger, Bjoern Mautz, Michael Mølhøj, Jan Kuentzer, Stefan Klostermann, Juergen Schoch, Hans R. Voelger, Jörg T. Regula, Patrick Cramer, Apollon Papadimitriou, Hubert Kettenberger
Software Mentions: 5
Published: over 10 years ago

10.3390/e23040433

Change Point Test for the Conditional Mean of Time Series of Counts Based on Support Vector Regression
Cited by: 2
Author(s): Sangyeol Lee, Sangjo Lee
Software Mentions: 5
Published: over 3 years ago

10.5713/ajas.18.0504

White striping degree assessment using computer vision system and consumer acceptance test
Cited by: 12
Author(s): Talita Kato, Saulo Martiello Mastelini, Gabriel Fillipe Centini Campos, Ana Paula Ayub da Costa Barbon, Sandra Helena Prudêncio, Massami Shimokomaki, Adriana Lourenço Soares, Sylvio Barbon
Software Mentions: 5
Published: over 5 years ago

10.3390/s21092899

Non-Destructive Detection Pilot Study of Vegetable Organic Residues Using VNIR Hyperspectral Imaging and Deep Learning Techniques
Cited by: 6
Author(s): Yong Weon Seo, Giyoung Kim, Jongguk Lim, Ahyeong Lee, Balgeum Kim, Jae-Kyung Jang, Changyeun Mo, Moon S. Kim
Software Mentions: 5
Published: over 3 years ago

10.1038/s41374-020-0455-y

Multiclass cancer classification in fresh frozen and formalin-fixed paraffin-embedded tissue by DigiWest multiplex protein analysis
Cited by: 2
Author(s): Teresa Bockmayr, Gerrit Erdmann, Denise Treue, Philipp Jurmeister, Julia Schneider, Anja Arndt, Daniel Heim, Michael Bockmayr, Christoph Sachse, Frederick Klauschen
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0062439

Novel Algorithm for Non-Invasive Assessment of Fibrosis in NAFLD
Cited by: 50
Author(s): Jan-Peter Sowa, Dominik Heider, Lars P. Bechmann, Guido Gerken, Daniel Hoffmann, Ali Canbay
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0119265

Multimarker Proteomic Profiling for the Prediction of Cardiovascular Mortality in Patients with Chronic Heart Failure
Cited by: 14
Author(s): Gilles Lemesle, Florence Maury, Olivia Beseme, Lionel Ovart, Philippe Amouyel, Nicolas Lamblin, Pascal de Groote, Christophe Bauters, Florence Pinet
Software Mentions: 4
Published: over 9 years ago

10.3389/fgene.2021.634554

Molecular Mapping of Water-Stress Responsive Genomic Loci in Lettuce (Lactuca spp.) Using Kinetics Chlorophyll Fluorescence, Hyperspectral Imaging and Machine Learning
Cited by: 9
Author(s): Pawan Kumar, Renée L. Eriksen, Ivan Šimko, Beiquan Mou
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-019-49226-6

Prediction of soil available water-holding capacity from visible near-infrared reflectance spectra
Cited by: 28
Author(s): Michael Blaschek, Pierre Roudier, Matteo Poggio, C. B. Hedley
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-018-30089-2

Predictive ability of genome-assisted statistical models under various forms of gene action
Cited by: 34
Author(s): Mehdi Momen, Ahmad Ayatollahi Mehrgardi, Ayyub Sheikhi, Andreas Kranis, Llibertat Tusell, Gota Morota, Guilherme J. M. Rosa, Daniel Gianola
Software Mentions: 4
Published: over 6 years ago

10.1016/j.jmb.2014.04.026

SuSPect: Enhanced Prediction of Single Amino Acid Variant (SAV) Phenotype Using Network Features
Cited by: 181
Author(s): Christopher M. Yates, Ioannis Filippis, Lawrence A. Kelley, Michael J.E. Sternberg
Software Mentions: 4
Published: over 10 years ago

10.1186/1471-2105-12-390

Classification of microarrays; synergistic effects between normalization, gene selection and machine learning
Cited by: 28
Author(s): Jenny Önskog, Eva Freyhult, Mattias Landfors, Patrik Rydén, Torgeir R. Hvidsten
Software Mentions: 4
Published: about 13 years ago

10.3390/ijms11093413

Prediction of PKCθ Inhibitory Activity Using the Random Forest Algorithm
Cited by: 15
Author(s): Hao Ming, Yan Li, Yonghua Wang, Shuwei Zhang
Software Mentions: 4
Published: about 14 years ago

10.1371/journal.pone.0176339

A systematic approach to estimate the distribution and total abundance of British mammals
Cited by: 41
Author(s): Simon Croft, Aliénor L. M. Chauvenet, Graham C. Smith
Software Mentions: 4
Published: over 7 years ago

10.1098/rsob.200052

Bioinformatical dissection of fission yeast DNA replication origins
Cited by: 1
Author(s): Koji Masuda, Claire Renard-Guillet, Katsuhiko Shirahige, Takashi Sutani
Software Mentions: 4
Published: over 4 years ago

10.1155/2015/573165

Automated Classification of Circulating Tumor Cells and the Impact of Interobsever Variability on Classifier Training and Performance
Cited by: 32
Author(s): Carl-Magnus Svensson, Ron Hübler, Marc Thilo Figge
Software Mentions: 4
Published: almost 10 years ago

10.3390/genes10100807

D-GPM: A Deep Learning Method for Gene Promoter Methylation Inference
Cited by: 11
Author(s): Xingxin Pan, Biao Liu, Xingzhao Wen, Yulu Liu, Xiuqing Zhang, Shengbin Li, Shuai Cheng Li
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.00248

A Contrast-Enhanced Computed Tomography Based Radiomics Approach for Preoperative Differentiation of Pancreatic Cystic Neoplasm Subtypes: A Feasibility Study
Cited by: 25
Author(s): Xiaoyong Shen, Fan Yang, Pengfei Yang, Modan Yang, Lei Xu, Jianyong Zhuo, Jianguo Wang, Di Lu, Zhikun Liu, Shusen Zheng, Tianye Niu, Xiao Xu
Software Mentions: 4
Published: over 4 years ago

10.1186/s12859-017-1848-9

A machine learning approach for predicting methionine oxidation sites
Cited by: 26
Author(s): Juan Carlos Aledo, Francisco R. Cantón, Francisco J. Veredas
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2021.609048

kernInt: A Kernel Framework for Integrating Supervised and Unsupervised Analyses in Spatio-Temporal Metagenomic Datasets
Cited by: 8
Author(s): Elies Ramon, Lluís A. Belanche-Muñoz, F. Molist, Raquel Quintanilla, Miguel Pérez‐Enciso, Yuliaxis Ramayo-Caldas
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0235089

Genome-wide association study and genomic selection for tolerance of soybean biomass to soybean cyst nematode infestation
Cited by: 26
Author(s): Waltram Ravelombola, Jun Qin, Ainong Shi, Liana Nice, Yong Bao, Aaron J. Lorenz, J. H. Orf, Nevin D. Young, Senyu Chen
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0202471

Biomarkers for classification and class prediction of stress in a murine model of chronic subordination stress
Cited by: 10
Author(s): Dominik Langgartner, Andrea M. Füchsl, Lisa Kaiser, Tatjana Meier, Sandra Foertsch, Christian Buske, Stefan O. Reber, Medhanie Mulaw
Software Mentions: 3
Published: about 6 years ago

10.1186/1471-2105-9-106

K-OPLS package: Kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space
Cited by: 74
Author(s): Max Bylesjö, Mattias Rantalainen, Jeremy K. Nicholson, Elaine Holmes, Johan Trygg
Software Mentions: 3
Published: almost 17 years ago

10.1186/s12885-020-07157-w

Network-based identification of biomarkers for colon adenocarcinoma
Cited by: 5
Author(s): Fuyan Hu, Qing Wang, Zhiyuan Yang, Zhen Zeng, Xiaoping Li
Software Mentions: 3
Published: over 4 years ago

10.1186/s12885-020-07494-w

Identification of common signatures in idiopathic pulmonary fibrosis and lung cancer using gene expression modeling
Cited by: 7
Author(s): Liubing Dong, Jiawen Yi, Maodong Xiang, Hongying Zhao, Yuhui Zhang
Software Mentions: 3
Published: about 4 years ago

10.1186/1755-8794-7-S1-S3

Integrative analysis reveals disease-associated genes and biomarkers for prostate cancer progression
Cited by: 22
Author(s): Yin Li, Wanwipa Vongsangnak, Luonan Chen, Bairong Shen
Software Mentions: 3
Published: over 10 years ago

10.1186/s13040-021-00274-7

Evaluation of different approaches for missing data imputation on features associated to genomic data
Cited by: 12
Author(s): Ben Omega Petrazzini, Hugo Naya, Fernando López-Bello, Gustavo E. Vazquez, Lucía Spangenberg
Software Mentions: 3
Published: about 3 years ago

10.1007/s10530-020-02400-8

Environmental niche and functional role similarity between invasive and native palms in the Atlantic Forest
Cited by: 8
Author(s): Carolina Bello, Ana Laura Pugina Cintra, Elisa Barreto, Maurício Humberto Vancine, Thadeu Sobral‐Souza, Catherine H. Graham, Mauro Galetti
Software Mentions: 3
Published: about 4 years ago

10.1111/2041-210X.12575

Tree‐centric mapping of forest carbon density from airborne laser scanning and hyperspectral data
Cited by: 188
Author(s): Michele Dalponte, David A. Coomes
Software Mentions: 3
Published: over 8 years ago

10.3390/molecules17044560

A Support Vector Machine Classification Model for Benzo[c]phenathridine Analogues with Topoisomerase-I Inhibitory Activity
Cited by: 7
Author(s): Khac-Minh Thai, Thuy-Quyen Nguyen, Trieu-Du Ngo, Thanh-Dao Tran, Thi-Ngoc-Phuong Huynh
Software Mentions: 3
Published: over 12 years ago

10.7717/peerj-cs.562

Robust proportional overlapping analysis for feature selection in binary classification within functional genomic experiments
Cited by: 9
Author(s): Muhammad Hamraz, Naz Gul, Mushtaq Raza, Dost Muhammad Khan, Umair Khalil, Seema Zubair, Zardad Khan
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pcbi.1007381

LOTUS: A single- and multitask machine learning algorithm for the prediction of cancer driver genes
Cited by: 25
Author(s): Olivier Collier, Véronique Stoven, Jean-Philippe Vert
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0092549

The Construction of Risk Prediction Models Using GWAS Data and Its Application to a Type 2 Diabetes Prospective Cohort
Cited by: 31
Author(s): Daichi Shigemizu, Testuo Abe, Takashi Morizono, Todd A. Johnson, Keith A. Boroevich, Yoichiro Hirakawa, Toshiharu Ninomiya, Yutaka Kiyohara, Michiaki Kubo, Yusuke Nakamura, Shiro Maeda, Tatsuhiko Tsunoda
Software Mentions: 3
Published: over 10 years ago

10.1007/s11634-015-0227-5

Ensemble of a subset of kNN classifiers
Cited by: 64
Author(s): Asma Gul, Aris Perperoglou, Zardad Khan, Osama Mahmoud, Miftahuddin Miftahuddin, Werner Adler, Berthold Lausen
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0233229

Laboratory-based and free-living algorithms for energy expenditure estimation in preschool children: A free-living evaluation
Cited by: 11
Author(s): Matthew Ahmadi, Alok Kumar Chowdhury, Toby Pavey, Stewart G. Trost
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0131388

The Relative Impact of Climate Change on the Extinction Risk of Tree Species in the Montane Tropical Andes
Cited by: 19
Author(s): Natalia Tejedor‐Garavito, Adrian C. Newton, Duncan Golicher, Sara Oldfield
Software Mentions: 3
Published: over 9 years ago

10.3390/cancers12092704

Mass Spectrometry Imaging for Reliable and Fast Classification of Non-Small Cell Lung Cancer Subtypes
Cited by: 13
Author(s): Mark Kriegsmann, Christiane Zgorzelski, Rita Casadonte, Kristina Schwamborn, Thomas Muley, Hauke Winter, Martin Eichhorn, Florian Eichhorn, Arne Warth, Sören‐Oliver Deininger, Petros Christopoulos, Michael Thomas, Thomas Longerich, Albrecht Stenzinger, Wilko Weichert, Carsten Müller‐Tidow, Jörg Kriegsmann, Peter Schirmacher, Katharina Kriegsmann
Software Mentions: 3
Published: about 4 years ago

10.1002/ece3.5185

Tree shape‐based approaches for the comparative study of cophylogeny
Cited by: 14
Author(s): Mariano Avino, Garway T Ng, Yiying He, Mathias S. Renaud, Bradley R. Jones, Art F. Y. Poon
Software Mentions: 3
Published: over 5 years ago

Projects: cran: kernlab

Papers Mentioning kernlab 157