Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: gprofiler2
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/gprofiler2
Interface to the 'g:Profiler' Toolset
13 versions
Latest release: over 1 year ago
4 dependent packages
2,848 downloads last month
Papers Mentioning gprofiler2 21
10.12688/f1000research.24956.2
gprofiler2 -- an R package for gene list functional enrichment analysis and namespace conversion toolset g:ProfilerCited by: 274
Author(s): Liis Kolberg, Uku Raudvere, Ivan Kuzmin, Jaak Vilo, Hedi Peterson
Software Mentions: 14
Published: almost 4 years ago
10.1371/journal.pntd.0009321
Localized skin inflammation during cutaneous leishmaniasis drives a chronic, systemic IFN-γ signatureCited by: 15
Author(s): Camila Farias Amorim, Fernanda O. Novais, Ba Tiep Nguyen, Maurício T. Nascimento, Jamile Lago, Alexsandro S. Lago, Lucas P. Carvalho, Daniel P. Beiting, Phillip Scott
Software Mentions: 11
Published: over 3 years ago
10.1186/s12859-021-04179-4
GWENA: gene co-expression networks analysis and extended modules characterization in a single Bioconductor packageCited by: 12
Author(s): Gwenaëlle G. Lemoine, Marie‐Pier Scott‐Boyer, Bathilde Ambroise, Olivier Périn, Arnaud Droit
Software Mentions: 10
Published: over 3 years ago
10.1186/s12859-020-03722-z
PAWER: protein array web exploreRCited by: 4
Author(s): Dmytro Fishman, Ivan Kuzmin, Priit Adler, Jaak Vilo, Hedi Peterson
Software Mentions: 7
Published: about 4 years ago
10.1002/edm2.191
Sex and oestrogen receptor β have modest effects on gene expression in the mouse brain posterior cortexCited by: 1
Author(s): Jasmine A. Fels, Gabriella Casalena, Giovanni Manfredi
Software Mentions: 7
Published: almost 4 years ago
10.3390/ijms21218160
Proteomic Profiling of Archived Tissue of Primary Melanoma Identifies Proteins Associated with MetastasisCited by: 3
Author(s): Andrew Shapanis, Chester Lai, Mathew Sommerlad, Erika Parkinson, Eugene Healy, Paul Skipp
Software Mentions: 6
Published: almost 4 years ago
10.7554/eLife.52648
Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitorsCited by: 34
Author(s): Anneke Dixie Kakebeen, Alexander Daniel Chitsazan, Madison Corinne Williams, Lauren Saunders, Andrea E. Wills
Software Mentions: 6
Published: over 4 years ago
10.1111/acel.13331
A novel p53 regulator, C16ORF72/TAPR1, buffers against telomerase inhibitionCited by: 16
Author(s): Yahya Benslimane, María Sánchez-Osuna, Jasmin Coulombe-Huntington, Thierry Bertomeu, Danielle Henry, Caroline Huard, Éric Bonneil, Pierre Thibault, Mike Tyers, Lea Harrington
Software Mentions: 5
Published: over 3 years ago
10.1093/g3journal/jkab146
The Wild Worm Codon Adapter: a web tool for automated codon adaptation of transgenes for expression in non-<i>Caenorhabditis</i> nematodesCited by: 3
Author(s): Astra S. Bryant, Elissa A. Hallem
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-020-74705-6
Finding disease modules for cancer and COVID-19 in gene co-expression networks with the Core&Peel methodCited by: 5
Author(s): Marta Lucchetta, Marco Pellegrini
Software Mentions: 5
Published: almost 4 years ago
10.3390/biology10070665
FLAME: A Web Tool for Functional and Literature Enrichment Analysis of Multiple Gene ListsCited by: 22
Author(s): Foteini Thanati, Evangelos Karatzas, Fotis A. Baltoumas, Dimitrios J. Stravopodis, Aristides G. Eliopoulos, Georgios A. Pavlopoulos
Software Mentions: 4
Published: about 3 years ago
10.1172/jci.insight.144575
Hedgehog interacting protein–expressing lung fibroblasts suppress lymphocytic inflammation in miceCited by: 5
Author(s): Jeong H. Yun, ChangHee Lee, Tao Liu, Siqi Liu, Edy Y. Kim, Shuang Xu, Jeffrey L. Curtis, Luca Pinello, Russell P. Bowler, Edwin K. Silverman, Craig P. Hersh, Xiaobo Zhou
Software Mentions: 4
Published: about 3 years ago
10.1038/s41598-020-75400-2
A systems genomics approach to uncover the molecular properties of cancer genesCited by: 0
Author(s): Felix Graßmann, Yudi Pawitan, Kamila Czene
Software Mentions: 4
Published: almost 4 years ago
10.3389/fimmu.2021.685237
Key Macrophage Responses to Infection With Mycobacterium tuberculosis Are Co-Regulated by microRNAs and DNA MethylationCited by: 11
Author(s): Monika Looney, Rachel Lorenc, Marc K. Halushka, Petros C. Karakousis
Software Mentions: 4
Published: over 3 years ago
10.1093/cercor/bhaa327
The Evolutionary History of Common Genetic Variants Influencing Human Cortical Surface AreaCited by: 18
Author(s): Amanda K. Tilot, Ekaterina A. Khramtsova, Dan Liang, Katrina L. Grasby, Neda Jahanshad, Jodie N. Painter, Lucía Colodro‐Conde, Janita Bralten, Derrek P. Hibar, Penelope A. Lind, Siyao Liu, Sarah M. Brotman, Paul M. Thompson, Sarah E. Medland, Fabìo Macciardi, Barbara Elaine Stranger, Lea K. Davis, Simon E. Fisher, Jason L. Stein
Software Mentions: 3
Published: almost 4 years ago
10.3390/ijms221910818
Neutrophil Pathways of Inflammation Characterize the Blood Transcriptomic Signature of Patients with Psoriasis and Cardiovascular DiseaseCited by: 13
Author(s): Amanda Kvist‐Hansen, Hannah Kaiser, Xing Wang, Martin Krakauer, Peter Michael Gørtz, Benjamin D. McCauley, Claus Zachariae, Christine Becker, Peter Riis Hansen, Lone Skov
Software Mentions: 3
Published: almost 3 years ago
10.1038/s41598-021-81843-y
Low-dose Drosera rotundifolia induces gene expression changes in 16HBE human bronchial epithelial cellsCited by: 4
Author(s): Fábio Arruda-Silva, Paolo Bellavite, Marta Marzotto
Software Mentions: 2
Published: over 3 years ago
10.1126/sciadv.abh3032
Identification of SARS-CoV-2–induced pathways reveals drug repurposing strategiesCited by: 26
Author(s): Namshik Han, Woochang Hwang, Konstantinos Tzelepis, Patrick Schmerer, Eliza Yankova, Méabh MacMahon, Winnie Lei, Nicholas M Katritsis, Anika Liu, Ulrike Felgenhauer, Alison Schuldt, Robert G. Harris, Kathryn Chapman, Frank McCaughan, Friedemann Weber, Tony Kouzarides
Software Mentions: 2
Published: about 3 years ago
10.21203/rs.3.rs-311000/v1
Single-cell immunophenotyping of the fetal immune response to maternal SARS-CoV-2 infection in late gestationCited by: 4
Author(s): Juan D. Matute, Benjamin Finander, David Pépin, Xinbin Ai, Neal Smith, Jonathan Li, Andrea G. Edlow, Alexandra Chloé Villani, Paul H. Lerou, Brian T. Kalish
Software Mentions: 2
Published: over 3 years ago
10.1074/jbc.RA120.015533
Inhibition of the SUV4-20 H1 histone methyltransferase increases frataxin expression in Friedreich's ataxia patient cellsCited by: 6
Author(s): Gabriela Vilema-Enríquez, Robert B. A. Quinlan, Peter Kilfeather, Roberta Mazzone, Saba Saqlain, Irene del Molino del Barrio, Annalidia Donato, Gabriele Corda, F Li, Masoud Vedadi, Andrea H. Németh, P.E. Brennan, Richard Wade‐Martins
Software Mentions: 2
Published: almost 4 years ago
10.1186/s13041-021-00815-5
Kdm3b haploinsufficiency impairs the consolidation of cerebellum-dependent motor memory in miceCited by: 1
Author(s): Yong Gyu Kim, Myeong Seong Bak, Ahbin Kim, Yujin Kim, Yun Cheol Chae, Ye Lee Kim, Yang Sook Chun, Joon Yong An, Sang-Beom Seo, Sang Jeong Kim, Yong Seok Lee
Software Mentions: 1
Published: about 3 years ago