Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pntd.0009321

https://doi.org/10.1371/journal.pntd.0009321

Cited by: 15
Author(s): Camila Farias Amorim, Fernanda O. Novais, Ba Tiep Nguyen, Maurício T. Nascimento, Jamile Lago, Alexsandro S. Lago, Lucas P. Carvalho, Daniel P. Beiting, Phillip Scott
Published: about 3 years ago

Software Mentions 11

bioconductor: biomaRt

Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

bioconductor: sva

Surrogate Variable Analysis
Papers that mentioned: 511

cran: ggpubr

'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856

cran: gprofiler2

Interface to the 'g:Profiler' Toolset
Papers that mentioned: 21

cran: Hmisc

Harrell Miscellaneous
Papers that mentioned: 1,000

cran: PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292

cran: vegan

Community Ecology Package
Papers that mentioned: 6,903

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893

pypi: PACE

Data Quality of Experimental Data
Papers that mentioned: 13,779

pypi: stats

Calculator-style statistical functions
Papers that mentioned: 3,105