Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-021-04179-4

https://doi.org/10.1186/s12859-021-04179-4

GWENA: gene co-expression networks analysis and extended modules characterization in a single Bioconductor package

Cited by: 12
Author(s): Gwenaëlle G. Lemoine, Marie‐Pier Scott‐Boyer, Bathilde Ambroise, Olivier Périn, Arnaud Droit
Published: over 3 years ago

Software Mentions 10

bioconductor: CEMiTool
Co-expression Modules identification Tool
Papers that mentioned: 31
bioconductor: GWENA
Pipeline for augmented co-expression analysis
Papers that mentioned: 1
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
cran: CoDiNA
Co-Expression Differential Network Analysis
Papers that mentioned: 7
cran: gprofiler2
Interface to the 'g:Profiler' Toolset
Papers that mentioned: 21
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: NetRep
Permutation Testing Network Module Preservation Across Datasets
Papers that mentioned: 8
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
cran: wTO
Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network
Papers that mentioned: 7
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555