Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.24956.2

https://doi.org/10.12688/f1000research.24956.2

Cited by: 274
Author(s): Liis Kolberg, Uku Raudvere, Ivan Kuzmin, Jaak Vilo, Hedi Peterson
Published: over 3 years ago

Software Mentions 14

bioconductor: clusterProfiler

A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: enrichplot

Visualization of Functional Enrichment Result
Papers that mentioned: 249

bioconductor: OmnipathR

OmniPath web service client and more
Papers that mentioned: 3

bioconductor: topGO

Enrichment Analysis for Gene Ontology
Papers that mentioned: 652

cran: curl

A Modern and Flexible Web Client for R
Papers that mentioned: 21

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: gprofiler2

Interface to the 'g:Profiler' Toolset
Papers that mentioned: 21

cran: RCurl

General Network (HTTP/FTP/...) Client Interface for R
Papers that mentioned: 36

cran: scMappR

Single Cell Mapper
Papers that mentioned: 1

pypi: g

cli command to easily sync current directory
Papers that mentioned: 130

pypi: ggplot

ggplot for python
Papers that mentioned: 796

pypi: gp

UNKNOWN
Papers that mentioned: 3

pypi: gprofiler

Python port of the R wrapper for the g:Profiler functional enrichment tool.
Papers that mentioned: 19