Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: curl

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/curl

A Modern and Flexible Web Client for R
42 versions
Latest release: about 1 year ago
543 dependent packages
1,010,109 downloads last month

Papers Mentioning curl 21

A computational reproducibility study of PLOS ONE articles featuring longitudinal data analyses
Cited by: 15
Author(s): Heidi Seibold, Severin Czerny, Siona Decke, Roman Dieterle, Thomas Eder, Steffen Fohr, Nico Hahn, Rabea Hartmann, Christoph Heindl, Philipp Kopper, Dario Lepke, Verena Loidl, Maximilian Mandl, Sarah Musiol, Jessica Peter, Alexander Piehler, Elio Rojas, Stefanie Schmid, Hannah Schmidt, Melissa Schmoll, Lennart Schneider, Xiao-Yin To, Viêt Anh Tran, Antje Völker, Moritz Wagner, Joshua Wagner, Maria Waize, Hannah Wecker, Rui Yang, Simone Zellner, Malte Nalenz
Software Mentions: 46
Published: over 3 years ago

10.12688/f1000research.24956.2

gprofiler2 -- an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler
Cited by: 274
Author(s): Liis Kolberg, Uku Raudvere, Ivan Kuzmin, Jaak Vilo, Hedi Peterson
Software Mentions: 14
Published: about 4 years ago

10.1002/elsc.202000053

Implementing a digital infrastructure for the lab using a central laboratory server and the SiLA2 communication standard
Cited by: 3
Author(s): Marc Porr, F. Lange, Daniel Marquard, Laura Niemeyer, Patrick Lindner, Thomas Scheper, Sascha Beutel
Software Mentions: 8
Published: almost 4 years ago

10.3390/genes11040428

LSTrAP-Cloud: A User-Friendly Cloud Computing Pipeline to Infer Coexpression Networks
Cited by: 9
Author(s): Qiao Wen Tan, Wooi-Boon Goh, Marek Mutwil
Software Mentions: 6
Published: over 4 years ago

10.1186/1471-2105-12-S15-S5

Data hosting infrastructure for primary biodiversity data
Cited by: 13
Author(s): Anthony Goddard, Nevin Wilson, Phil Cryer, Grant Yamashita
Software Mentions: 5
Published: almost 13 years ago

10.1371/journal.pcbi.1004668

A Quick Introduction to Version Control with Git and GitHub
Cited by: 97
Author(s): John Blischak, Emily Davenport, Gregory V. Wilson
Software Mentions: 5
Published: almost 9 years ago

10.1093/gigascience/giy016

Boutiques: a flexible framework to integrate command-line applications in computing platforms
Cited by: 33
Author(s): Tristan Glatard, Gregory Kiar, Tristan Aumentado-Armstrong, Natacha Beck, Pierre Bellec, R. Bernard, Axel Bonnet, Shawn T. Brown, Sorina Camarasu-Pop, Frédéric Cervenansky, Samir Das, Rafael Ferreira da Silva, Guillaume Flandin, Pascal Girard, Krzysztof J. Gorgolewski, Charles R.G. Guttmann, Valérie Hayot‐Sasson, Pierre-Olivier Quirion, Pierre Rioux, Marc-Étienne Rousseau, Alan C. Evans
Software Mentions: 5
Published: over 6 years ago

10.1186/s13321-018-0312-9

MER: a shell script and annotation server for minimal named entity recognition and linking
Cited by: 27
Author(s): Francisco M. Couto, André Lamúrias
Software Mentions: 5
Published: almost 6 years ago

10.3389/fncir.2019.00005

DVID: Distributed Versioned Image-Oriented Dataservice
Cited by: 24
Author(s): William T. Katz, Stephen M. Plaza
Software Mentions: 4
Published: almost 6 years ago

10.3390/s21124002

OPAL—The Toolbox for the Integration and Analysis of IoT in a Semantically Annotated Way
Cited by: 0
Author(s): Philipp Hertweck, Tobias Hellmund, Jürgen Moßgraber
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1004008

A RESTful API for Accessing Microbial Community Data for MG-RAST
Cited by: 62
Author(s): Andreas Wilke, Jared Bischof, Travis Harrison, Tom Brettin, Mark D’Souza, Wolfgang Gerlach, Hunter Matthews, Tobias Paczian, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer
Software Mentions: 3
Published: almost 10 years ago

10.1140/epjds/s13688-021-00259-w

Dark Web Marketplaces and COVID-19: before the vaccine
Cited by: 26
Author(s): Alberto Bracci, Matthieu Nadini, Maxwell Aliapoulios, Damon McCoy, Ian Gray, Alexander Teytelboym, Angela Gallo, Andrea Baronchelli
Software Mentions: 3
Published: almost 4 years ago

10.1093/gigascience/giy150

Annotation of the<i>Giardia</i>proteome through structure-based homology and machine learning
Cited by: 19
Author(s): Brendan R E Ansell, Bernard J. Pope, Peter Georgeson, Samantha J. Emery-Corbin, Aaron R. Jex
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0179130

biochem4j: Integrated and extensible biochemical knowledge through graph databases
Cited by: 28
Author(s): Neil Swainston, Riza Theresa Batista-Navarro, Pablo Carbonell, Paul D. Dobson, Mark S. Dunstan, Adrian J. Jervis, María Vinaixa, Alan Williams, Sophia Ananiadou, Jean-Loup Faulon, Pedro Mendes, Douglas B. Kell, Nigel S. Scrutton, Rainer Breitling
Software Mentions: 2
Published: over 7 years ago

10.1016/j.mcpro.2021.100102

Nuclear Phosphatidylinositol 3,4,5-Trisphosphate Interactome Uncovers an Enrichment in Nucleolar Proteins
Cited by: 5
Author(s): Fatemeh Mazloumi Gavgani, Malene Skuseth Slinning, Andrea Papdiné Morovicz, Victoria Smith Arnesen, Diana Cornelia Turcu, Sandra Ninzima, Clive S. D’Santos, Aurélia E. Lewis
Software Mentions: 2
Published: almost 4 years ago

10.3389/fncom.2019.00074

Neuronal Morphology and Synapse Count in the Nematode Worm
Cited by: 2
Author(s): Robert M. Friedman
Software Mentions: 2
Published: about 5 years ago

10.1093/bioinformatics/bty925

ukbREST: efficient and streamlined data access for reproducible research in large biobanks
Cited by: 6
Author(s): Milton Pividori, Hae Kyung Im
Software Mentions: 2
Published: about 6 years ago

10.5808/GI.2019.17.2.e21

Improving spaCy dependency annotation and PoS tagging web service using independent NER services
Cited by: 8
Author(s): Nicola Colic, Fabio Rinaldi
Software Mentions: 2
Published: over 5 years ago

10.2196/cancer.9050

Assessing Unmet Information Needs of Breast Cancer Survivors: Exploratory Study of Online Health Forums Using Text Classification and Retrieval
Cited by: 27
Author(s): Susan McRoy, Majid Rastegar-Mojarad, Yanshan Wang, Kathryn J. Ruddy, Tufia C. Haddad, Hongfang Liu
Software Mentions: 1
Published: over 6 years ago

10.1007/s40708-015-0024-0

HAFNI-enabled largescale platform for neuroimaging informatics (HELPNI)
Cited by: 14
Author(s): Milad Makkie, Shijie Zhao, Xi Jiang, Jinglei Lv, Yu Zhao, Bao Ge, Xiang Li, Junwei Han, Tianming Liu
Software Mentions: 1
Published: almost 9 years ago

10.1093/database/bax060

A RESTful application programming interface for the PubMLST molecular typing and genome databases
Cited by: 26
Author(s): Keith A. Jolley, James E. Bray, Martin C. J. Maiden
Software Mentions: 1
Published: almost 8 years ago