Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: gprofiler
https://packages.ecosyste.ms/registries/pypi.org/packages/gprofiler
Python port of the R wrapper for the g:Profiler functional enrichment tool.
5 versions
Latest release: almost 6 years ago
112 downloads last month
Papers Mentioning gprofiler 19
10.12688/f1000research.24956.2
gprofiler2 -- an R package for gene list functional enrichment analysis and namespace conversion toolset g:ProfilerCited by: 274
Author(s): Liis Kolberg, Uku Raudvere, Ivan Kuzmin, Jaak Vilo, Hedi Peterson
Software Mentions: 14
Published: about 4 years ago
10.7554/eLife.69040
Common virulence gene expression in adult first-time infected malaria patients and severe casesCited by: 15
Author(s): Jan Stephan Wichers, Gerry Tonkin‐Hill, Thorsten Thye, Ralf Krumkamp, Benno Kreuels, Jan Strauss, Heidrun von Thien, Jochen Scholz, Helle Hansson, Rasmus Weisel Jensen, Louise Turner, Freia-Raphaella Lorenz, Anna Schöllhorn, Iris Bruchhaus, Egbert Tannich, Rolf Fendel, Thomas D. Otto, Thomas Lavstsen, Tim‐Wolf Gilberger, Michael Duffy, Anna Bachmann
Software Mentions: 9
Published: over 3 years ago
10.1186/s13229-020-00369-8
Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in lifeCited by: 18
Author(s): Jessica A. Jiménez, Travis Ptacek, Alex H. Tuttle, Ralf S. Schmid, Sheryl S. Moy, Jeremy M. Simon, Mark J. Zylka
Software Mentions: 5
Published: about 4 years ago
10.1111/acel.13012
The conserved histone chaperone LIN‐53 is required for normal lifespan and maintenance of muscle integrity in <i>Caenorhabditis elegans</i>Cited by: 11
Author(s): Stefanie Müthel, Bora Uyar, Ming He, Anne Krause, Burcu Vitrinel, Selman Bulut, Djordje Vasiljevic, Iris Marchal, Stefan Kempa, Altuna Akalin, Baris Tursun
Software Mentions: 4
Published: over 5 years ago
10.1186/1471-2164-14-882
VTCdb: a gene co-expression database for the crop species Vitis vinifera (grapevine)Cited by: 55
Author(s): D. Wong, Crystal Sweetman, Damian Paul Drew, Christopher M. Ford
Software Mentions: 4
Published: almost 11 years ago
10.1371/journal.pcbi.1004884
A Network Biology Approach Identifies Molecular Cross-Talk between Normal Prostate Epithelial and Prostate Carcinoma CellsCited by: 5
Author(s): Víctor Treviño, Alberto Cassese, Zsuzsanna Nagy, Xiaodong Zhuang, John Herbert, Philipp Antzack, Kim Clarke, Nick Davies, Ayesha Rahman, Moray J. Campbell, Michele Guindani, Roy Bicknell, Marina Vannucci, Francesco Falciani
Software Mentions: 4
Published: over 8 years ago
10.15252/emmm.202013074
Impairment of the ER/mitochondria compartment in human cardiomyocytes with PLN p.Arg14del mutationCited by: 25
Author(s): Friederike Cuello, Anika E. Knaust, Umber Saleem, Malte Loos, Janice Raabe, Diogo Mosqueira, Sandra D. Laufer, Michaela Schweizer, Petra van der Kraak, Frederik Flenner, Bärbel Ulmer, Ingke Braren, Xiaoke Yin, Konstantinos Theofilatos, Jorge Ruiz-Orera, Giannino Patone, Birgit Klampe, Thomas G. Schulze, Angelika Piasecki, Yigal M. Pinto, Aryan Vink, Norbert Hübner, Siân E. Harding, Manuel Mayr, Chris Denning, Thomas Eschenhagen, Arne Hansen
Software Mentions: 4
Published: over 3 years ago
10.3389/fimmu.2021.599805
Innate Lymphoid Cells Activation and Transcriptomic Changes in Response to Human Dengue InfectionCited by: 6
Author(s): Tiraput Poonpanichakul, Wilawan Chan-in, Anunya Opasawatchai, Fabien Loison, Oranart Matangkasombut, Varodom Charoensawan, Ponpan Matangkasombut, Denfree Thailand
Software Mentions: 4
Published: over 3 years ago
10.1186/s13059-017-1203-5
Multi-tissue DNA methylation age predictor in mouseCited by: 307
Author(s): Thomas M. Stubbs, Marc Jan Bonder, Anne-Katrien Stark, Felix Krueger, Ferdinand von Meyenn, Oliver Stegle, Wolf Reik
Software Mentions: 4
Published: over 7 years ago
10.1186/s12915-021-00955-z
Single-cell RNA-seq reveals a concomitant delay in differentiation and cell cycle of aged hematopoietic stem cellsCited by: 18
Author(s): Léonard Hérault, Mathilde Poplineau, Adrien Mazuel, Nadine Platet, Élisabeth Rémy, Estelle Duprez
Software Mentions: 3
Published: almost 4 years ago
10.3389/fmolb.2016.00078
The Mutational Landscape of the Oncogenic MZF1 SCAN Domain in CancerCited by: 32
Author(s): Mads Nygaard, Thilde Terkelsen, André Vidas Olsen, Valentina Sora, Juan Salamanca Viloria, Fabio Rizza, Sanne Bergstrand-Poulsen, Miriam Di Marco, Mette Vixø Vistesen, Matteo Tiberti, Matteo Lambrughi, Marja Jäättelä, Tuula Kallunki, Elena Papaleo
Software Mentions: 3
Published: almost 8 years ago
10.3389/fgene.2016.00206
A Network Approach of Gene Co-expression in the Zea mays/Aspergillus flavus Pathosystem to Map Host/Pathogen Interaction PathwaysCited by: 30
Author(s): Bryan Musungu, Deepak Bhatnagar, Robert L. Brown, Gary A. Payne, Greg O'Brian, Ahmad M. Fakhoury, Matt Geisler
Software Mentions: 3
Published: about 8 years ago
10.3389/fimmu.2020.00838
IL-22 Paucity in APECED Is Associated With Mucosal and Microbial Alterations in Oral CavityCited by: 13
Author(s): Epp Kaleviste, Malte Rühlemann, Jaanika Kärner, Liis Haljasmägi, Liina Tserel, Elin Org, Katarina Trebušak Podkrajšek, Tadej Battelino, Corinna Bang, André Franke, Pärt Peterson, Kai Kisand
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-020-60210-3
Increased mitochondrial and lipid metabolism is a conserved effect of Insulin/PI3K pathway downregulation in adipose tissueCited by: 6
Author(s): Lucia Bettedi, Anqi Yan, Eugene F. Schuster, Nazif Alic, Lazaros C. Foukas
Software Mentions: 2
Published: over 4 years ago
10.1038/s41416-020-0992-6
Progesterone receptor membrane component 1 promotes the growth of breast cancers by altering the phosphoproteome and augmenting EGFR/PI3K/AKT signallingCited by: 35
Author(s): Diego A. Pedroza, Venkatesh Rajamanickam, Ramadevi Subramani, Alejandra Bencomo, Adriana Galvez, Rajkumar Lakshmanaswamy
Software Mentions: 2
Published: over 4 years ago
10.3390/ijms22115889
Dual Mechanisms of Metabolism and Gene Expression of the CCRF-CEM Leukemia Cells under Glucocorticoid TreatmentCited by: 0
Author(s): George Ι. Lambrou, Theodoros Karakonstantakis, Spiros Vlahopoulos, Apostolos Zaravinos
Software Mentions: 2
Published: over 3 years ago
10.3390/cancers13123028
Co-Deregulated miRNA Signatures in Childhood Central Nervous System Tumors: In Search for Common Tumor miRNA-Related MechanicsCited by: 3
Author(s): George Ι. Lambrou, Apostolos Zaravinos, Maria Braoudaki
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-017-4313-2
Global gene expression in two potato cultivars in response to ‘Candidatus Liberibacter solanacearum’ infectionCited by: 11
Author(s): Julien Lévy, Azucena Mendoza, J. Creighton Miller, Cécilia Tamborindeguy, Elizabeth A. Pierson
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0076028
The Antifungal Eugenol Perturbs Dual Aromatic and Branched-Chain Amino Acid Permeases in the Cytoplasmic Membrane of YeastCited by: 55
Author(s): Emad Darvishi, Mansoor Omidi, Ali Akbar Shahnejat Bushehri, Ashkan Golshani, Myron L. Smith
Software Mentions: 1
Published: about 11 years ago