Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: ggpubr

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggpubr

'ggplot2' Based Publication Ready Plots
20 versions
Latest release: almost 2 years ago
198 dependent packages
197,518 downloads last month

Papers Mentioning ggpubr 856

10.1172/jci.insight.146242
Comorbid illnesses are associated with altered adaptive immune responses to SARS-CoV-2
Cited by: 36
Author(s): Krystle K. Q. Yu, Stephanie Fischinger, Malisa T. Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D. Layton, Jennifer K. Logue, Melissa S. Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas Franko, Robert Y. Choi, Anna Wald, Dan H. Barouch, David M. Koelle, Douglas A. Lauffenburger, Helen Y. Chu, Galit Alter, Chetan Seshadri
Software Mentions: 6
Published: over 3 years ago
10.1016/j.jbc.2021.100877
The RNA-binding protein Nab2 regulates the proteome of the developing Drosophila brain
Cited by: 4
Author(s): Edwin B. Corgiat, Sara M. List, J. Christopher Rounds, Anita H. Corbett, Kenneth H. Moberg
Software Mentions: 6
Published: over 3 years ago
10.7150/jca.42531
Identification of the key genes and characterizations of Tumor Immune Microenvironment in Lung Adenocarcinoma (LUAD) and Lung Squamous Cell Carcinoma (LUSC)
Cited by: 24
Author(s): Lemeng Zhang, Jianhua Chen, Tianli Cheng, Hua Yang, Haitao Li, Changqie Pan
Software Mentions: 6
Published: almost 5 years ago
10.7150/jca.58004
Pan-cancer Analysis of NEDD4L and Its Tumor Suppressor Effects in Clear Cell Renal Cell Carcinoma
Cited by: 7
Author(s): Huiyue Dong, Ling Zhu, Jingjing Sun, Yi Zhang, Qiang Cui, Lin Wu, Shushang Chen, Jun Lü
Software Mentions: 6
Published: almost 4 years ago
10.1111/jcmm.16414
Identification of hub genes associated with neutrophils infiltration in colorectal cancer
Cited by: 12
Author(s): Hao Su, Tianyi Cai, Sen Zhang, Xialin Yan, Leqi Zhou, Zengyou He, Peng Xue, Jianwen Li, Min Zheng, Xiao Yang, Bo Feng
Software Mentions: 6
Published: over 3 years ago
10.1210/clinem/dgaa830
Thyroid Function Before, During, and After COVID-19
Cited by: 129
Author(s): Bernard Khoo, Tricia Tan, Sophie Clarke, Edouard Mills, Bijal Patel, Manish Modi, Maria Phylactou, Victoria Salem, Layla Thurston, Emma Alexander, Karim Meeran, Alexander N Comninos, Ali Abbara, Waljit S. Dhillo
Software Mentions: 6
Published: about 4 years ago
10.1038/s41598-019-52549-z
Rectal swabs are a reliable proxy for faecal samples in infant gut microbiota research based on 16S-rRNA sequencing
Cited by: 29
Author(s): Marta Reyman, Marlies A. van Houten, Kayleigh Arp, Elisabeth A. M. Sanders, Debby Bogaert
Software Mentions: 6
Published: about 5 years ago
10.1038/s41598-019-56074-x
Metagenomic analysis of dental calculus in ancient Egyptian baboons
Cited by: 20
Author(s): Claudio Ottoni, Meriam Guellil, Andrew T. Ozga, Anne C. Stone, Oliver Kersten, Barbara Bramanti, Stéphanie Porcier, Wim Van Neer
Software Mentions: 6
Published: almost 5 years ago
10.1038/s41598-020-69268-5
Molecular malaria surveillance using a novel protocol for extraction and analysis of nucleic acids retained on used rapid diagnostic tests
Cited by: 8
Author(s): Etienne A Guirou, Tobias Schindler, Salome Hosch, Olivier Trésor Donfack, Charlene Aya Yoboue, Silvan Krähenbühl, Anna Deal, Glenda Cosi, Linda Gondwe, Grace Mwangoka, Heavenlight Masuki, Nahya Salim, Maxmillian Mpina, Said Jongo, Salim Abdulla, Stephen L. Hoffman, Bonifacio Manguire Nlavo, Carl D. Maas, Carlos Cortes Falla, Wonder P. Phiri, Guillermo A. García, Marcel Tanner, Claudia Daubenberger
Software Mentions: 6
Published: over 4 years ago
10.1038/s41598-020-73262-2
Explicit integration of dispersal-related metrics improves predictions of SDM in predatory arthropods
Cited by: 17
Author(s): Jérémy Monsimet, Olivier Devineau, Julien Pétillon, Denis Lafage
Software Mentions: 6
Published: about 4 years ago
10.1038/s41598-020-79736-7
BIRC5 is a prognostic biomarker associated with tumor immune cell infiltration
Cited by: 37
Author(s): Lijun Xu, Wenpeng Yu, Han Xiao, Lin Kang
Software Mentions: 6
Published: almost 4 years ago
10.1038/s41598-020-80533-5
Structural aspects of lesional and non-lesional skin microbiota reveal key community changes in leprosy patients from India
Cited by: 5
Author(s): Nitin Bayal, Sunil Nagpal, Mohammed Monzoorul Haque, Milind S. Patole, Yogesh S. Shouche, Shekhar C. Mande, Sharmila S. Mande
Software Mentions: 6
Published: almost 4 years ago
10.1128/mSphere.00455-21
A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition
Cited by: 9
Author(s): Heather L. Deel, Alexandra L. Emmons, Jennifer Kiely, Franklin E. Damann, David Carter, Aaron M. Lynne, Rob Knight, Zhenjiang Xu, Sibyl R. Bucheli, Jessica L. Metcalf
Software Mentions: 6
Published: about 3 years ago
10.1128/mSystems.00100-17
Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients
Cited by: 11
Author(s): Stephen Wandro, Lisa A. Carmody, Tara Gallagher, John J. LiPuma, Katrine Whiteson
Software Mentions: 6
Published: almost 7 years ago
10.1128/mSystems.00003-19
16S rRNA/rRNA Gene Ratios and Cell Activity Staining Reveal Consistent Patterns of Microbial Activity in Plant-Associated Soil
Cited by: 39
Author(s): Alan W. Bowsher, Patrick J. Kearns, Ashley Shade
Software Mentions: 6
Published: over 5 years ago
10.1128/mSystems.00017-19
Probiotic <i>Bifidobacterium lactis</i> V9 Regulates the Secretion of Sex Hormones in Polycystic Ovary Syndrome Patients through the Gut-Brain Axis
Cited by: 128
Author(s): Jiachao Zhang, Zhihong Sun, Shuaiming Jiang, Xiaoye Bai, Chenchen Ma, Qingyun Peng, Kaining Chen, Haibo Chang, Tuanyu Fang, Heping Zhang
Software Mentions: 6
Published: over 5 years ago
10.1128/mSystems.00498-19
Anoxygenic Phototrophs Span Geochemical Gradients and Diverse Morphologies in Terrestrial Geothermal Springs
Cited by: 20
Author(s): Trinity L. Hamilton, Annastacia C. Bennett, Senthil K. Murugapiran, J. R. Havig
Software Mentions: 6
Published: almost 5 years ago
10.1186/s40246-021-00313-8
Identification of differentially expressed genes and signaling pathways in human conjunctiva and reproductive tract infected with Chlamydia trachomatis
Cited by: 3
Author(s): Guodong Zhu, Xun‐Jie Cao, Yaping Li, Jiaxin Li, Zi-Jian Leng, Lisha Xie, Xu‐Guang Guo
Software Mentions: 6
Published: over 3 years ago
10.1038/s41396-020-00844-3
Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles
Cited by: 45
Author(s): Annelein Meisner, L. Basten Snoek, Joseph Nesme, Elizabeth Dent, Samuel Jacquiod, Aimée T. Classen, Anders Priemé
Software Mentions: 6
Published: almost 4 years ago
10.7150/ijbs.62553
DDX39 as a predictor of clinical prognosis and immune checkpoint therapy efficacy in patients with clear cell renal cell carcinoma
Cited by: 11
Author(s): Yewei Bao, Aimin Jiang, Kai Dong, Xinxin Gan, Wenliang Gong, Zhenjie Wu, Bing Liu, Yi Bao, Jie Wang, Linhui Wang
Software Mentions: 6
Published: almost 4 years ago
10.1093/jisesa/ieab062
Comparison of Yellow and Blue Sticky Cards for Detection and Monitoring Parasitoid Wasps of the Invasive <i>Halyomorpha halys</i> (Hemiptera: Pentatomidae)
Cited by: 4
Author(s): Mark Cody Holthouse, Lori R. Spears, Diane G. Alston
Software Mentions: 6
Published: about 3 years ago
10.3390/ijms21228769
Physiological Changes in Barley mlo-11 Powdery Mildew Resistance Conditioned by Tandem Repeat Copy Number
Cited by: 3
Author(s): Cynthia Ge, Paula Moolhuijzen, Lee T. Hickey, Elzette Wentzel, Wei‐Wei Deng, Eric Dinglasan, Simon R. Ellwood
Software Mentions: 6
Published: about 4 years ago
10.3390/ijms21249622
Novel Liver X Receptor Ligand GAC0001E5 Disrupts Glutamine Metabolism and Induces Oxidative Stress in Pancreatic Cancer Cells
Cited by: 7
Author(s): Shivangi Srivastava, Scott Widmann, Charles Ho, Donovan Nguyen, Alexis Nguyen, Asitha Premaratne, Jan‐Åke Gustafsson, Chin-Yo Lin
Software Mentions: 6
Published: almost 4 years ago
10.3390/ijms22126319
Expression Quantitative Trait Loci (eQTLs) Associated with Retrotransposons Demonstrate their Modulatory Effect on the Transcriptome
Cited by: 6
Author(s): Sulev Kõks, Abigail L Pfaff, Vivien J. Bubb, John P. Quinn
Software Mentions: 6
Published: over 3 years ago
10.1007/s11060-021-03721-x
LAG-3 expression in the inflammatory microenvironment of glioma
Cited by: 19
Author(s): Maximilian J. Mair, Barbara Kiesel, Katharina Feldmann, Georg Widhalm, Karin Dieckmann, Adelheid Wöhrer, Leonhard Müllauer, Matthias Preusser, Anna S. Berghoff
Software Mentions: 6
Published: over 3 years ago
10.1186/s13048-020-00730-8
Identification of an autophagy-related gene signature for survival prediction in patients with cervical cancer
Cited by: 18
Author(s): Hengyu Chen, Qingchun Deng, Wenwen Wang, Huishan Tao, Ying Gao
Software Mentions: 6
Published: about 4 years ago
10.3390/jpm11030183
Maternal Psychological and Biological Factors Associated to Gestational Complications
Cited by: 10
Author(s): David Ramiro-Cortijo, María de la Calle, Vanesa Benítez, Andrea Gila-Díaz, Bernardo Moreno‐Jiménez, Silvia M. Arribas, Eva Garrosa
Software Mentions: 6
Published: over 3 years ago
10.1186/s12967-020-02689-y
Three hematologic/immune system-specific expressed genes are considered as the potential biomarkers for the diagnosis of early rheumatoid arthritis through bioinformatics analysis
Cited by: 60
Author(s): Qi Cheng, Xin Chen, Huaxiang Wu, Yan Du
Software Mentions: 6
Published: almost 4 years ago
10.1523/ENEURO.0286-20.2020
Molecular Diversity of Glutamatergic and GABAergic Synapses from Multiplexed Fluorescence Imaging
Cited by: 7
Author(s): Eric Danielson, Karen Perez de Arce, Beth A. Cimini, Eike‐Christian Wamhoff, Shantanu Singh, Jeffrey R. Cottrell, Anne E. Carpenter, Mark Bathe
Software Mentions: 6
Published: almost 4 years ago
10.3390/nu13041340
Ileal Lactase Expression Associates with Lactase Persistence Genotypes
Cited by: 1
Author(s): Jan Krzysztof Nowak, Emilia Dybska, Marzena Dworacka, Natallia Tsikhan, Victoria Kononets, Saule Bermagambetova, Jarosław Walkowiak
Software Mentions: 6
Published: over 3 years ago
10.1051/parasite/2020062
Increasing importance of anthelmintic resistance in European livestock: creation and meta-analysis of an open database
Cited by: 89
Author(s): Hannah Rose Vineer, Eric R. Morgan, Hubertus Hertzberg, David J. Bartley, Antonio Bosco, Johannes Charlier, Christophe Chartier, Edwin Claerebout, Theo de Waal, Guy Hendrickx, Barbara Hinney, Johan Höglund, Jožica Ježek, Martin Kašný, Orla M. Keane, María Martínez‐Valladares, Teresa Letra Mateus, Jennifer McIntyre, Marcin Mickiewicz, Ana María Muñoz, Clare J Phythian, H.W. Ploeger, Aleksandra Vergles Rataj, Philip Skuce, Stanislav Simin, Smaragda Sotiraki, Marina Spînu, Snorre Stuen, Stig Milan Thamsborg, Jaroslav Vadlejch, Marián Várady, Georg von Samson‐Himmelstjerna, Laura Rinaldi
Software Mentions: 5
Published: almost 5 years ago
10.3390/jcm9010161
The Serum Cell-Free microRNA Expression Profile in MCTD, SLE, SSc, and RA Patients
Cited by: 16
Author(s): Barbara Stypińska, Anna Wajda, Ewa Walczuk, Marzena Olesińska, Aleksandra Lewandowska, Marcela Walczyk, Agnieszka Paradowska‐Gorycka
Software Mentions: 5
Published: almost 5 years ago
10.1002/jcp.28522
Comprehensive analysis of a ceRNA network reveals potential prognostic cytoplasmic lncRNAs involved in HCC progression
Cited by: 84
Author(s): Yi Bai, Junyu Long, Zhisong Liu, Jianzhen Lin, Hanchan Huang, Dongxu Wang, Yang Xu, Fei Miao, Yilei Mao, Xinting Sang, Hong Zhao
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0248654
A comparative analysis of biogas production from tomato bio-waste in mesophilic batch and continuous anaerobic digestion systems
Cited by: 17
Author(s): Árpád Szilágyi, Attila Bodor, Norbert Tolvai, Kornél L. Kovács, László Bodai, Roland Wirth, Zoltán Bagi, Ágnes Szepesi, Viktória Markó, Balázs Kakuk, Naila Bounedjoum, Gábor Rákhely
Software Mentions: 5
Published: over 3 years ago
10.7554/eLife.62236
Identification of human glucocorticoid response markers using integrated multi-omic analysis from a randomized crossover trial
Cited by: 21
Author(s): Dimitrios Chantzichristos, Peder Svensson, Terence Garner, Camilla A M Glad, Brian R. Walker, Ragnhildur Bergthorsdottir, Oskar Ragnarsson, Penelope Trimpou, Roland H Stimson, Stina Willemoes Borresen, Ulla Feldt‐Rasmussen, Per‐Anders Jansson, Stanko Skrtic, Adam Stevens, Gudmundur Johannsson
Software Mentions: 5
Published: over 3 years ago
10.7717/peerj.7310
Patterned progression of gut microbiota associated with necrotizing enterocolitis and late onset sepsis in preterm infants: a prospective study in a Chinese neonatal intensive care unit
Cited by: 16
Author(s): Jiayi Liu, Yuqing Li, Yi Feng, Liya Pan, Zhoulonglong Xie, Zhilong Yan, Li Zhang, Mingkun Li, Jianhua Zhao, Jianhua Sun, Li Hong
Software Mentions: 5
Published: over 5 years ago
10.3390/insects12070584
Intrasexual Vibrational Behavior of Philaenus spumarius in Semi-Field Conditions
Cited by: 5
Author(s): Imane Akassou, Sabina Avosani, Valentina Zaffaroni Caorsi, Vincenzo Verrastro, Marco Ciolli, Valerio Mazzoni
Software Mentions: 5
Published: over 3 years ago
10.3389/fonc.2020.607622
Identification and Verification of Immune-Related Gene Prognostic Signature Based on ssGSEA for Osteosarcoma
Cited by: 96
Author(s): Bo Xiao, Liyan Liu, Aoyu Li, Xiang Cheng, Pingxiao Wang, Hui Li, Tao Xiao
Software Mentions: 5
Published: almost 4 years ago
10.1093/cid/ciab528
Global Respiratory Syncytial Virus–Related Infant Community Deaths
Cited by: 26
Author(s): Natalie I Mazur, Yvette N Löwensteyn, Joukje Willemsen, Christopher Gill, Leah S Forman, Lawrence Mwananyanda, Dianna M. Blau, Robert F. Breiman, Shabir A. Madhi, Sana Mahtab, Emily S. Gurley, Shams El Arifeen, Nega Assefa, J. Anthony G. Scott, Dickens Onyango, Beth A Tippet Barr, Karen L. Kotloff, Samba O. Sow, Inácio Mandomando, Ikechukwu U. Ogbuanu, Amara Jambai, Quique Bassat, Mauricio T. Caballero, Fernando P. Polack, Saad B. Omer, Abdul Momin Kazi, Eric A F Simões, Ashish Satav, Louis Bont
Software Mentions: 5
Published: about 3 years ago
10.1098/rstb.2020.0107
Sex-biased gene expression and recent sex chromosome turnover
Cited by: 14
Author(s): Nicolás Lichilín, Athimed El Taher, Astrid Böhne
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0243395
The applicability of forensic time since death estimation methods for buried bodies in advanced decomposition stages
Cited by: 21
Author(s): Stefan Pittner, Valentina Bugelli, M. Eric Benbow, Bianca Ehrenfellner, Angela Zissler, Carlo Pietro Campobasso, Roelof‐Jan Oostra, Maurice C. G. Aalders, Richard Zehner, Lena Lutz, Fabio Monticelli, Christian Staufer, Katharina Helm, Vilma Pinchi, Joseph P. Receveur, Janine Geißenberger, Peter Steinbacher, Jens Amendt
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0238648
The intestinal microbiome is a co-determinant of the postprandial plasma glucose response
Cited by: 6
Author(s): Nadja B Søndertoft, Josef Korbinian Vogt, Manimozhiyan Arumugam, Mette Kristensen, Rikke Juul Gøbel, Yong Fan, Liwei Lyu, Martin Iain Bahl, Carsten Eriksen, Lars Ängquist, Hanne Frøkiær, Tue H. Hansen, Susanne Brix, Henrik Bjørn Nielsen, Henrik Vestergaard, Ramneek Gupta, Tine Rask Licht, Lotte Lauritzen, Oluf Pedersen
Software Mentions: 5
Published: about 4 years ago
10.1002/pld3.320
High resolution RNA‐seq profiling of genes encoding ribosomal proteins across different organs and developmental stages in <i>Arabidopsis thaliana</i>
Cited by: 5
Author(s): Wei Xiong, Jiancong Zhang, Ting Lan, Wenwen Kong, Xiaoyan Wang, Lin Liu, Xuemei Chen, Beixin Mo
Software Mentions: 5
Published: over 3 years ago
10.1186/s13073-020-00751-4
Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples
Cited by: 98
Author(s): Mao Xiao, Xiaoqing Liu, Jingkai Ji, Min Li, Jiandong Li, Lin Yang, Wanying Sun, Peng Ren, Guifang Yang, Jincun Zhao, Tianzhu Liang, Huahui Ren, Cheng Tian, Zhong Huang, Wenchen Song, Yanqun Wang, Ziqing Deng, Yongqiang Zhao, Zhihua Ou, Daxi Wang, Jielun Cai, Xinyi Cheng, Taiqing Feng, Honglong Wu, Yanping Gong, Huanming Yang, Jian Wang, Xun Xu, Shida Zhu, Fang Chen, Yanyan Zhang, Weijun Chen, Yimin Li, Junhua Li
Software Mentions: 5
Published: over 4 years ago
10.1186/s13059-021-02336-9
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications
Cited by: 56
Author(s): Giulio Formenti, Arang Rhie, Jennifer Balacco, Bettina Haase, Jacquelyn Mountcastle, Olivier Fédrigo, Shan-Estelle Brown, Marco Rosario Capodiferro, Farooq Omar Maan Al-Ajli, Roberto Ambrosini, Peter Houde, Sergey Koren, Karen Oliver, Michelle Smith, Jason Skelton, Emma Betteridge, Jale Dolucan, Craig Corton, Iliana Bista, James Torrance, Alan S. Tracey, Jonathan Wood, Marcela Uliano-Silva, Kerstin Howe, Shane McCarthy, Sylke Winkler, Woori Kwak, Jonas Korlach, Arkarachai Fungtammasan, Daniel Fordham, Vânia Costa, Simon Mayes, Matteo Chiara, David S. Horner, Eugene W. Myers, Richard Durbin, Alessandro Achilli, Edward L. Braun, Adam M. Phillippy, Erich D. Jarvis
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pgen.1007793
Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise
Cited by: 26
Author(s): Stefanie Schöne, Melissa Bothe, Edda Einfeldt, Marina Borschiwer, Philipp Benner, Martin Vingron, Morgane Thomas‐Chollier, Sebastiaan H. Meijsing
Software Mentions: 5
Published: about 6 years ago
10.18632/aging.103861
Development of a susceptibility gene based novel predictive model for the diagnosis of ulcerative colitis using random forest and artificial neural network
Cited by: 20
Author(s): Hanyang Li, Lijie Lai, Jun Shen
Software Mentions: 5
Published: about 4 years ago
10.3389/fvets.2019.00123
Age-Related Serum Biochemical Reference Intervals Established for Unweaned Calves and Piglets in the Post-weaning Period
Cited by: 42
Author(s): Kuai Yu, Francesca Canalías, David Solà-Oriol, Laura Arroyo, Raquel Pato, Yolanda Saco, M. Terré, Anna Bassols
Software Mentions: 5
Published: over 5 years ago
10.1007/s10388-021-00859-5
Visceral fat obesity is the key risk factor for the development of reflux erosive esophagitis in 40–69-years subjects
Cited by: 3
Author(s): Shinya Ohashi, Takahisa Maruno, Keita Fukuyama, Osamu Kikuchi, Tomohiko Sunami, Yuki Kondo, Seiichiro Imai, Aki Matsushima, Kunihiro Suzuki, Fumika Usui, Masahiro Yakami, Atsushi Yamada, Hiroyoshi Isoda, Shigemi Matsumoto, Hiroshi Seno, Manabu Muto, Mayumi Inoue
Software Mentions: 5
Published: over 3 years ago
10.1111/acel.13441
Youthful and age‐related matreotypes predict drugs promoting longevity
Cited by: 25
Author(s): Cyril Statzer, Elisabeth Jongsma, Sean X Liu, Alexander Dakhovnik, Franziska Wandrey, Pavlo Mozharovskyi, Fred Zülli, Collin Y. Ewald
Software Mentions: 5
Published: over 3 years ago
10.18632/aging.203021
Development of a prognostic model for hepatocellular carcinoma using genes involved in aerobic respiration
Cited by: 1
Author(s): Jiawei Rao, Xukun Wu, Xiaozhuan Zhou, Ronghai Deng, Yu Ma
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pntd.0009440
Serological biomarker for assessing human exposure to Aedes mosquito bites during a randomized vector control intervention trial in northeastern Thailand
Cited by: 5
Author(s): Bénédicte Fustec, Thipruethai Phanitchat, Sirinart Aromseree, Chamsai Pientong, Kesorn Thaewnongiew, Tipaya Ekalaksananan, Dominique Cerqueira, Anne Poinsignon, Éric Elguero, Michael J. Bangs, Neal Alexander, Hans J. Overgaard, Vincent Corbel
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pntd.0008699
Development of a multiplex microsphere immunoassay for the detection of antibodies against highly pathogenic viruses in human and animal serum samples
Cited by: 2
Author(s): Rebecca Surtees, Daniel Stern, Katharina Ahrens, Nicole Kromarek, Angelika Lander, Petra Kreher, Sabrina Weiß, Roger Hewson, Emma K. Punch, John N. Barr, Peter T. Witkowski, Emmanuel Couacy‐Hymann, Andrea Marzi, Brigitte G. Dorner, Andreas Kurth
Software Mentions: 5
Published: about 4 years ago
10.1186/s12864-021-07787-9
The CCCH zinc finger family of soybean (Glycine max L.): genome-wide identification, expression, domestication, GWAS and haplotype analysis
Cited by: 9
Author(s): Xin Hu, Jian‐Fang Zuo
Software Mentions: 5
Published: over 3 years ago
10.3389/fgene.2020.610704
Investigation on Potential Correlation Between Small Nuclear Ribonucleoprotein Polypeptide A and Lung Cancer
Cited by: 6
Author(s): Maoxi Yuan, Chunxiao Yu, Xin Chen, Yubing Wu
Software Mentions: 5
Published: almost 4 years ago
10.3389/fpls.2021.626405
By Animal, Water, or Wind: Can Dispersal Mode Predict Genetic Connectivity in Riverine Plant Species?
Cited by: 14
Author(s): Alison G. Nazareno, L. Lacey Knowles, Christopher W. Dick, Lúcia Garcez Lohmann
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0247374
Top-down and sideways: Herbivory and cross-ecosystem connectivity shape restoration success at the salt marsh-upland ecotone
Cited by: 8
Author(s): Kerstin Wasson, Karen E. Tanner, Andrea Woofolk, Sean McCain, Justin P. Suraci
Software Mentions: 5
Published: over 3 years ago
10.3389/fpls.2021.681145
The Associated With Carbon Conversion Rate and Source–Sink Enzyme Activity in Tomato Fruit Subjected to Water Stress and Potassium Application
Cited by: 10
Author(s): Anrong Luo, Chenni Zhou, Jinliang Chen
Software Mentions: 5
Published: over 3 years ago
10.3389/fphys.2021.637924
A Subpopulation of Schwann Cell-Like Cells With Nerve Regeneration Signatures Is Identified Through Single-Cell RNA Sequencing
Cited by: 4
Author(s): Zairong Wei, Shenyou Shu, Mingjun Zhang, Sitian Xie, Shijie Tang, Kaiyu Nie, Haihong Li
Software Mentions: 5
Published: over 3 years ago
10.3389/fpls.2021.715711
Advances on the Visualization of the Internal Structures of the European Mistletoe: 3D Reconstruction Using Microtomography
Cited by: 13
Author(s): Max D. Mylo, Mara Hofmann, Alexander Delp, Ronja Scholz, Frank Walther, Thomas Speck, Olga Speck
Software Mentions: 5
Published: about 3 years ago
10.1186/s12864-020-6558-4
Genome-wide association study (GWAS) reveals genetic loci of lead (Pb) tolerance during seedling establishment in rapeseed (Brassica napus L.)
Cited by: 10
Author(s): Fugui Zhang, Xin Xiao, Kun Xu, Xi Cheng, Ting Xie, Jihong Hu, Xiaoming Wu
Software Mentions: 5
Published: almost 5 years ago
10.3389/fgene.2020.575776
TMEM205 Is an Independent Prognostic Factor and Is Associated With Immune Cell Infiltrates in Hepatocellular Carcinoma
Cited by: 13
Author(s): Jiawei Rao, Xukun Wu, Xiaozhuan Zhou, Ronghai Deng, Yi Ma
Software Mentions: 5
Published: about 4 years ago
10.3390/ijerph17145138
Exercise, Comorbidities, and Health-Related Quality of Life in People Living with HIV: The HIBES Cohort Study
Cited by: 6
Author(s): Philipp Zech, Felipe Barreto Schuch, Camilo Germán Alberto Pérez Chaparro, Maria Kangas, Michael A. Rapp, Andreas Heißel
Software Mentions: 5
Published: over 4 years ago
10.1186/s12920-020-00740-x
Integrative analyses of gene expression profile reveal potential crucial roles of mitotic cell cycle and microtubule cytoskeleton in pulmonary artery hypertension
Cited by: 15
Author(s): Jing Luo, Haiyan Li, Zhenwei Liu, Chenlu Li, Ruochen Wang, Jinxia Fang, Saisai Lu, Jing Guo, Xiongzhao Zhu, Xiaobing Wang
Software Mentions: 5
Published: over 4 years ago
10.3389/fmicb.2021.629449
Diversity of Weissella confusa in Pozol and Its Carbohydrate Metabolism
Cited by: 5
Author(s): Diana Hernández-Oaxaca, Rafael López-Sánchez, Luis Lozano, Carmen Wacher, Lorenzo Segovia, Agustín López Munguía
Software Mentions: 5
Published: over 3 years ago
10.1186/s12870-018-1467-2
WRKY transcription factors in legumes
Cited by: 51
Author(s): Hui Song, Weihong Sun, Guofeng Yang, Juan Sun
Software Mentions: 5
Published: about 6 years ago
10.3389/fimmu.2021.744799
Combined Transcriptome and Proteome Leukocyte’s Profiling Reveals Up-Regulated Module of Genes/Proteins Related to Low Density Neutrophils and Impaired Transcription and Translation Processes in Clinical Sepsis
Cited by: 11
Author(s): Giuseppe Gianini Figueirêdo Leite, Bianca Lima Ferreira, Alexandre Keiji Tashima, Erika Sayuri Nishiduka, Edécio Cunha‐Neto, Milena Karina Coló Brunialti, Murillo Santucci César de Assunção, Luciano César Pontes Azevedo, Flávio Geraldo Resende Freitas, Tom van der Poll, Brendon P. Scicluna, Reinaldo Salomão
Software Mentions: 5
Published: about 3 years ago
10.18632/aging.203081
Pan-cancer analysis of the prognostic value of C12orf75 based on data mining
Cited by: 3
Author(s): Guangzhen Cai, Guan-Nan Jin, Jintai Liang, Ganxun Li, Xiaoping Chen, Huifang Liang, Zhao Ding
Software Mentions: 5
Published: over 3 years ago
10.1128/mSystems.00325-19
A Cross-Sectional Study of Compositional and Functional Profiles of Gut Microbiota in Sardinian Centenarians
Cited by: 88
Author(s): Lu Wu, Tiansheng Zeng, Angelo Zinellu, Salvatore Rubino, David J. Kelvin, Ciriaco Carru
Software Mentions: 5
Published: about 5 years ago
10.18632/aging.103977
Identification of immune landscape signatures associated with clinical and prognostic features of hepatocellular carcinoma
Cited by: 2
Author(s): Hongmei Yan, Yu-Chuan Chen, Kai Wang, Yu Lu, Xixin Huang, Qianyu Li, Yuwen Xie, Jiayu Lin, Yueyun He, Xinyu Yi, Yanzhi Wang, Longhua Chen, Yi Ding, Yiyi Li
Software Mentions: 5
Published: about 4 years ago
10.3389/fcell.2021.648806
Construction of a Prognostic Immune-Related LncRNA Risk Model for Lung Adenocarcinoma
Cited by: 16
Author(s): Yue Li, Ruoyi Shen, Anqi Wang, Jian Zhao, Jieqi Zhou, Weijie Zhang, Ruochen Zhang, Jianjie Zhu, Zeyi Liu, Jian-An Huang
Software Mentions: 5
Published: over 3 years ago
10.1002/cam4.3289
Predicting biomarkers from classifier for liver metastasis of colorectal adenocarcinomas using machine learning models
Cited by: 12
Author(s): Shuwen Han, Yang Xi, Qing Zhou, Zhuang Jing, Wei Wu
Software Mentions: 5
Published: over 4 years ago
10.3389/fcell.2021.690542
Predicting Panel of Metabolism and Immune-Related Genes for the Prognosis of Human Ovarian Cancer
Cited by: 7
Author(s): Lingyun Zhang, Wenwen Sun, Weimin Ren, Jinguo Zhang, Guoxiong Xu
Software Mentions: 5
Published: over 3 years ago
10.3390/metabo10050212
An NMR-Based Approach to Identify Urinary Metabolites Associated with Acute Physical Exercise and Cardiorespiratory Fitness in Healthy Humans—Results of the KarMeN Study
Cited by: 10
Author(s): Sina Kistner, M Rist, Maik Döring, Claudia Dörr, Rainer Neumann, Sascha Härtel, Achim Bub
Software Mentions: 5
Published: over 4 years ago
10.3390/cells9020323
Painting of Fourth and the X-Linked 1.688 Satellite in D. melanogaster Is Involved in Chromosome-Wide Gene Regulation
Cited by: 6
Author(s): Samaneh Ekhteraei-Tousi, Jacob Lewerentz, Jonas Larsson
Software Mentions: 5
Published: almost 5 years ago
10.1186/s40168-021-01042-9
Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop
Cited by: 40
Author(s): Javier A. Ceja-Navarro, Wang Yuan, Daliang Ning, Abelardo Arellano, Leila Ramanculova, Mengting Yuan, Alyssa Byer, Kelly D. Craven, Malay C. Saha, Eoin L. Brodie, Jennifer Pett‐Ridge, Mary K. Firestone
Software Mentions: 5
Published: over 3 years ago
10.3389/fcell.2021.665161
An EMT-Related Gene Signature for Predicting Response to Adjuvant Chemotherapy in Pancreatic Ductal Adenocarcinoma
Cited by: 6
Author(s): Zengyu Feng, Kexian Li, Jianyao Lou, Yulian Wu, Chenghong Peng
Software Mentions: 5
Published: over 3 years ago
10.1186/s40168-021-01090-1
Genomic adaptations enabling Acidithiobacillus distribution across wide-ranging hot spring temperatures and pHs
Cited by: 16
Author(s): Chanenath Sriaporn, Kathleen A. Campbell, Martin J. Van Kranendonk, Kim M. Handley
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-021-90145-2
An in-depth analysis of the mitochondrial phylogenetic landscape of Cambodia
Cited by: 5
Author(s): Anita Kloss‐Brandstätter, Monika Summerer, David Horst, Basil A. Horst, Gertraud Streiter, Julia Raschenberger, Florian Kronenberg, Torpong Sanguansermsri, Jürgen Horst, Hansi Weißensteiner
Software Mentions: 5
Published: over 3 years ago
10.1038/s41419-020-02948-2
Acyl-CoA thioesterase 1 prevents cardiomyocytes from Doxorubicin-induced ferroptosis via shaping the lipid composition
Cited by: 55
Author(s): Yunchang Liu, Liping Zeng, Yong Yang, Chen Chen, Daowen Wang, Hong Wang
Software Mentions: 5
Published: about 4 years ago
10.3389/fmicb.2020.00360
Time-Course RNAseq Reveals Exserohilum turcicum Effectors and Pathogenicity Determinants
Cited by: 16
Author(s): Maria Petronella Human, David Kenneth Berger, Bridget Genevieve Crampton
Software Mentions: 5
Published: over 4 years ago
10.1186/s40168-021-01110-0
Prevotella copri increases fat accumulation in pigs fed with formula diets
Cited by: 70
Author(s): Congying Chen, Shouguo Fang, Hong Wei, Maozhang He, Hao Fu, Xinwei Xiong, Yunyan Zhou, Jingyuan Wu, Jun Gao, Hui Yang, Lusheng Huang
Software Mentions: 5
Published: over 3 years ago
10.3389/fimmu.2020.00559
The TCR Repertoire Reconstitution in Multiple Sclerosis: Comparing One-Shot and Continuous Immunosuppressive Therapies
Cited by: 22
Author(s): Roberta Amoriello, Victor Greiff, Alessandra Aldinucci, Elena Bonechi, Alberto Carnasciali, Benedetta Peruzzi, Anna Maria Repice, Alice Mariottini, Riccardo Saccardi, Benedetta Mazzanti, Luca Massacesi, Clara Ballerini
Software Mentions: 5
Published: over 4 years ago
10.1186/s40168-021-01102-0
Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome
Cited by: 22
Author(s): Shi Huang, Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu, Pedro Belda-Ferre, Yoshiki Vázquez-Baeza, Qiyun Zhu, Chenchen Ma, Congfa Li, Amir Zarrinpar, Yang‐Yu Liu, Rob Knight, Jiachao Zhang
Software Mentions: 5
Published: over 3 years ago
10.3390/d12060245
Nourished, Exposed Beaches Exhibit Altered Sediment Structure and Meiofaunal Communities
Cited by: 8
Author(s): Stephen R. Fegley, Julian P. Smith, Douglas E. Johnson, Amelia U. Schirmer, Jeremiah Daniel JonesBoggs, Austin Edmonds, Joseph Bursey
Software Mentions: 5
Published: over 4 years ago
10.3389/fmed.2021.731421
Clinical Features of Spontaneous Regression of Retinopathy of Prematurity in China: A 5-Year Retrospective Case Series
Cited by: 4
Author(s): Liang Wang, Manhong Li, Jianping Zhu, Hongxiang Yan, Lei Wu, Jing Fan, Yi Zhou, Kaili Gou, Zifeng Zhang, Yusheng Wang
Software Mentions: 5
Published: about 3 years ago
10.1038/s41418-021-00784-1
Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment
Cited by: 58
Author(s): Safae Terrisse, Lisa Derosa, Valerio Iebba, François Ghiringhelli, Inês Vaz-Luís, Guido Kroemer, Marine Fidelle, Stergios Christodoulidis, Nicola Segata, Andrew Maltez Thomas, Anne‐Laure Martin, Aude Sirven, Sibille Everhard, Fanny Aprahamian, Nitharsshini Nirmalathasan, Romy Aarnoutse, Marjolein L. Smidt, Janine Ziemons, Carlos Caldas, Sibylle Loibl, Carsten Denkert, Sylvère Durand, Claudia Iglesias, Filippo Pietrantonio, Bertrand Routy, Fabrice André, Edoardo Pasolli, Suzette Delaloge, Laurence Zitvogel
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-021-84905-3
Causal effects in microbiomes using interventional calculus
Cited by: 9
Author(s): Musfiqur Rahman Sazal, Vitalii Stebliankin, Kalai Mathee, Changwon Yoo, Giri Narasimhan
Software Mentions: 5
Published: over 3 years ago
10.3390/curroncol28030210
Transcriptomic Landscape of Lower Grade Glioma Based on Age-Related Non-Silent Somatic Mutations
Cited by: 2
Author(s): Young Joon Park, Jeongman Park, Ju Won Ahn, Jeong Min Sim, Su Jung Kang, Suwan Kim, So Jung Hwang, Songhee Han, Kyu Bo Sung, Jaejoon Lim
Software Mentions: 5
Published: over 3 years ago
10.3390/ijms21051894
The Polymorphic PolyQ Tail Protein of the Mediator Complex, Med15, Regulates the Variable Response to Diverse Stresses
Cited by: 7
Author(s): Gallagher Jeg, Ser Sl, Michael C. Ayers, C Nassif, Amaury Pupo
Software Mentions: 5
Published: over 4 years ago
10.3390/microorganisms8111713
Genetic Variation and Preliminary Indications of Divergent Niche Adaptation in Cryptic Clade II of Escherichia
Cited by: 3
Author(s): Zhi Yong Shen, Xiu Pei Koh, Yan Yu, S. S. Lau
Software Mentions: 5
Published: about 4 years ago
10.18632/aging.102819
Expression and prognostic value of long non-coding RNA H19 in glioma via integrated bioinformatics analyses
Cited by: 33
Author(s): Yi Xiao, Zi-peng Zhu, LI Jian-xiong, Jie Yao, Haitao Jiang, Ran Ran, Xueyuan Li, Zhiqiang Li
Software Mentions: 5
Published: almost 5 years ago
10.3390/microorganisms9040854
Changes in Gut Microbiota Correlates with Response to Treatment with Probiotics in Patients with Atopic Dermatitis. A Post Hoc Analysis of a Clinical Trial
Cited by: 15
Author(s): Eric Climent, Juan F. Martínez-Blanch, Laura Llobregat, Beatriz Ruzafa-Costas, Miguel A Carrión-Gutiérrez, A. Ramírez-Boscá, David Prieto‐Merino, Salvador Genovés, Francisco M. Codoñer, Daniel Ramón, Empar Chenoll, Vicente Navarro-López
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-020-73597-w
Pomegranate: 2D segmentation and 3D reconstruction for fission yeast and other radially symmetric cells
Cited by: 9
Author(s): Erod Keaton Baybay, Eric Esposito, Silke Hauf
Software Mentions: 5
Published: about 4 years ago
10.3390/ijms21010145
Gene Copy Number and Post-Transductional Mechanisms Regulate TRAP1 Expression in Human Colorectal Carcinomas
Cited by: 3
Author(s): Michele Pietrafesa, Francesca Maddalena, Luciana Possidente, Valentina Condelli, Pietro Zoppoli, Valeria Li Bergolis, Maria Grazia Rodriquenz, Michele Aieta, Giulia Vita, Franca Esposito, Matteo Landriscina
Software Mentions: 5
Published: almost 5 years ago
10.3389/fmolb.2020.576298
Identification of Immune-Related Genes MSR1 and TLR7 in Relation to Macrophage and Type-2 T-Helper Cells in Osteosarcoma Tumor Micro-Environments as Anti-metastasis Signatures
Cited by: 10
Author(s): Zhiyu Chen, Huanhuan Huang, Yang Wang, Fangbiao Zhan, Zhengxue Quan
Software Mentions: 5
Published: almost 4 years ago
10.1186/s13100-019-0190-3
Stowaway miniature inverted repeat transposable elements are important agents driving recent genomic diversity in wild and cultivated carrot
Cited by: 6
Author(s): Alicja Macko-Podgórni, Katarzyna Stelmach, Kornelia Kwolek, Dariusz Grzebelus
Software Mentions: 5
Published: almost 5 years ago
10.1002/ece3.6535
Trophic level and basal resource use of soil animals are hardly affected by local plant associations in abandoned arable land
Cited by: 0
Author(s): Jörg‐Alfred Salamon, Janet Wissuwa, Thomas Frank, Stefan Scheu, Anton Potapov
Software Mentions: 5
Published: over 4 years ago
10.3389/fmicb.2020.559728
Dynamic Changes in the Microbiome of Rice During Shoot and Root Growth Derived From Seeds
Cited by: 21
Author(s): Mengying Wang, Alexander W. Eyre, Michael R. Thon, Yeonyee Oh, Ralph A. Dean
Software Mentions: 5
Published: about 4 years ago
10.1038/s41598-020-59511-4
Does sediment composition sort kinorhynch communities? An ecomorphological approach through geometric morphometrics
Cited by: 3
Author(s): Diego Cepeda, Dolores Trigo, Fernando Pardos, Nuria Sánchez
Software Mentions: 5
Published: almost 5 years ago