Papers: 10.1371/journal.pgen.1007793

https://doi.org/10.1371/journal.pgen.1007793

Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise

Cited by: 26
Author(s): Stefanie Schöne, Melissa Bothe, Edda Einfeldt, Marina Borschiwer, Philipp Benner, Martin Vingron, Morgane Thomas‐Chollier, Sebastiaan H. Meijsing
Published: almost 8 years ago

Software Mentions 5

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
Very Likely Science (83)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
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bioconductor: DNAshapeR
High-throughput prediction of DNA shape features
Papers that mentioned: 10
Very Likely Science (73)
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
Very Likely Science (75)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)