cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2017.02624

Characterization of the Skin Microbiota of the Cane Toad Rhinella cf. marina in Puerto Rico and Costa Rica
Cited by: 15
Author(s): Juan G. Abarca, Ibrahim Zuñiga, Gilmary Ortiz-Morales, Armando Lugo, Mariel Viquez-Cervilla, Natalia Rodríguez-Hernández, Frances Vázquez-Sánchez, Catalina Murillo‐Cruz, Ernesto A. Torres-Rivera, Adrián A. Pinto‐Tomás, Filipa Godoy-Vitorino
Software Mentions: 7
Published: over 8 years ago

10.3390/ijerph18158115

Longitudinal Associations of Marital, Parenting, and Employment Transitions with Weight Gain in a Multi-Ethnic Asian Population Aged 21 Years and Above
Cited by: 5
Author(s): Clare Whitton, Yvonne Hui Min Wong, Rob M. van Dam
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41388-021-01876-5

The FLI portion of EWS/FLI contributes a transcriptional regulatory function that is distinct and separable from its DNA-binding function in Ewing sarcoma
Cited by: 12
Author(s): Megann A. Boone, Cenny Taslim, Julie Crow, Julia Selich‐Anderson, Andrea K. Byrum, Iftekhar A. Showpnil, Benjamin D. Sunkel, Meng Wang, Benjamin Z. Stanton, Emily R. Theisen, Stephen L. Lessnick
Software Mentions: 7
Published: about 5 years ago

10.3390/nu12092569

Influence of Maternal Age and Gestational Age on Breast Milk Antioxidants During the First Month of Lactation
Cited by: 17
Author(s): Andrea Gila-Díaz, Gloria Herranz Carrillo, Silvia Cañas, Miguel Sáenz de Pipaón, José Martínez‐Orgado, Pilar Rodríguez-Rodríguez, Ángel L. López de Pablo, María Á. Martín-Cabrejas, David Ramiro-Cortijo, Silvia M. Arribas
Software Mentions: 7
Published: almost 6 years ago

10.1186/s13195-020-00709-z

TREM2 Alzheimer’s variant R47H causes similar transcriptional dysregulation to knockout, yet only subtle functional phenotypes in human iPSC-derived macrophages
Cited by: 25
Author(s): Hazel Hall‐Roberts, Devika Agarwal, Juliane Obst, Thomas B. Smith, Jimena Monzón‐Sandoval, Elena Di Daniel, Caleb Webber, William James, Emma Mead, John B. Davis, Sally A. Cowley
Software Mentions: 7
Published: over 5 years ago

10.3390/md18080379

Laminariales Host Does Impact Lipid Temperature Trajectories of the Fungal Endophyte Paradendryphiella salina (Sutherland.)
Cited by: 2
Author(s): Marine Vallet, Tarik Méziane, Najet Thiney, Soizic Prado, Cédric Hubas
Software Mentions: 7
Published: almost 6 years ago

10.1038/s42003-020-01174-y

Chemically induced mutations in a MutaMouse reporter gene inform mechanisms underlying human cancer mutational signatures
Cited by: 12
Author(s): Marc A. Beal, Matthew J. Meier, Danielle P. LeBlanc, Clotilde Maurice, Jason M. O’Brien, Carole L. Yauk, Francesco Marchetti
Software Mentions: 7
Published: almost 6 years ago

10.3389/fpsyg.2018.02358

East Asian Young and Older Adult Perceptions of Emotional Faces From an Age- and Sex-Fair East Asian Facial Expression Database
Cited by: 13
Author(s): Yu-Zhen Tu, Dai-Jie Lin, Atsunobu Suzuki, Joshua Oon Soo Goh
Software Mentions: 7
Published: over 7 years ago

10.3390/antiox10030448

Intra-Individual Variation and Reliability of Biomarkers of the Antioxidant Defense System by Considering Dietary and Lifestyle Factors in Premenopausal Women
Cited by: 2
Author(s): Alexandra Jungert, Jan Frank
Software Mentions: 7
Published: over 5 years ago

10.3390/ijerph17217771

The Quality of Work Index and the Quality of Employment Index: A Multidimensional Approach of Job Quality and Its Links to Well-Being at Work
Cited by: 23
Author(s): Georges Steffgen, Philipp Sischka, Martha Fernandez de Henestrosa
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2019.00675

Influence of Urbanization on Epiphytic Bacterial Communities of the Platanus × hispanica Tree Leaves in a Biennial Study
Cited by: 29
Author(s): Jordan Espenshade, Sofie Thijs, S.W. Gawroński, Hannelore Bové, Nele Weyens, Jaco Vangronsveld
Software Mentions: 7
Published: about 7 years ago

10.1186/s12864-021-07744-6

The effect of methanol fixation on single-cell RNA sequencing data
Cited by: 19
Author(s): Xinlei Wang, Yu Liu, Angela Ruohao Wu
Software Mentions: 7
Published: about 5 years ago

10.1128/mSystems.00632-19

Early-Stage Staphylococcus aureus Bloodstream Infection Causes Changes in the Concentrations of Lipoproteins and Acute-Phase Proteins and Is Associated with Low Antibody Titers against Bacterial Virulence Factors
Cited by: 7
Author(s): Stephan Michalik, Nandakumar Sundaramoorthy, Annette Murr, Maren Depke, Uwe Völker, Barbara M. Bröker, Hege Vangstein Aamot, Frank Schmidt
Software Mentions: 7
Published: over 6 years ago

10.1111/mec.15724

Leech blood‐meal invertebrate‐derived DNA reveals differences in Bornean mammal diversity across habitats
Cited by: 19
Author(s): Rosie Drinkwater, Tommaso Jucker, Joshua H.T. Potter, Tom Swinfield, David A. Coomes, Eleanor M. Slade, M. Thomas P. Gilbert, Owen T. Lewis, Henry Bernard, Matthew J. Struebig, Elizabeth L. Clare, Stephen J. Rossiter
Software Mentions: 7
Published: over 5 years ago

10.3758/s13414-019-01949-4

On the link between attentional search and the oculomotor system: Is preattentive search restricted to the range of eye movements?
Cited by: 1
Author(s): Soazig Casteau, Daniel T. Smith
Software Mentions: 7
Published: over 6 years ago

10.1186/s12882-018-0995-1

Low agreement between modified-Schwartz and CKD-EPI eGFR in young adults: a retrospective longitudinal cohort study
Cited by: 15
Author(s): Michael Webster‐Clark, Byron C. Jaeger, Yi Zhong, Guido Filler, Ana Catalina Álvarez-Elías, Nora Franceschini, Maria Ferris
Software Mentions: 7
Published: almost 8 years ago

10.3389/fmicb.2020.628755

Horizontal Transmission of the Heritable Protective Endosymbiont Hamiltonella defensa Depends on Titre and Haplotype
Cited by: 11
Author(s): Heidi Kaech, Christoph Vorburger
Software Mentions: 7
Published: over 5 years ago

10.1186/s12936-020-03181-0

Characterization of two in vivo challenge models to measure functional activity of monoclonal antibodies to Plasmodium falciparum circumsporozoite protein
Cited by: 19
Author(s): Rama Raghunandan, Bryan T. Mayer, Yevel Flores-García, Monica W. Gerber, Raphaël Gottardo, Hugo Jhun, Sonia M. Herrera, Daniel W. Pérez-Ramos, Emily Locke, C. Richter King, Fidel Zavala
Software Mentions: 7
Published: over 6 years ago

10.1186/s12936-017-1738-7

Change in Anopheles richness and composition in response to artificial flooding during the creation of the Jirau hydroelectric dam in Porto Velho, Brazil
Cited by: 9
Author(s): Moreno S. Rodrigures, Elis P. A. Batista, Alexandre de Almeida e Silva, Fábio Medeiros da Costa, Verissimo A. S. Neto, Luiz Herman Soares Gil
Software Mentions: 7
Published: over 9 years ago

10.1128/mSphere.00806-20

Raman Spectroscopy-Based Measurements of Single-Cell Phenotypic Diversity in Microbial Populations
Cited by: 15
Author(s): Cristina García‐Timermans, Ruben Props, Boris Zacchetti, Myrsini Sakarika, Frank Delvigne, Nico Boon
Software Mentions: 7
Published: over 5 years ago

10.1128/mSphere.00737-20

Comparative Genomics Analyses of Lifestyle Transitions at the Origin of an Invasive Fungal Pathogen in the Genus Cryphonectria
Cited by: 16
Author(s): Lea Stauber, Simone Prospero, Daniel Croll
Software Mentions: 7
Published: over 5 years ago

10.1186/1471-2164-15-702

Identification of candidate genes involved in early iron deficiency chlorosis signaling in soybean (Glycine max) roots and leaves
Cited by: 58
Author(s): Adrienne N. Moran Lauter, Gregory A. Peiffer, Tao Yin, Steven A. Whitham, Dianne Cook, Randy C. Shoemaker, Michelle A. Graham
Software Mentions: 7
Published: almost 12 years ago

10.1128/mSphere.00056-20

Emergence of a Novel Salmonella enterica Serotype Reading Clonal Group Is Linked to Its Expansion in Commercial Turkey Production, Resulting in Unanticipated Human Illness in North America
Cited by: 19
Author(s): Elizabeth A. Miller, Ehud Elnekave, Cristian Flores-Figueroa, Abigail Johnson, Ashley Kearney, Jeannette Muñoz-Aguayo, Kaitlin A. Tagg, Lorelee Tschetter, Bonnie Weber, Céline Nadon, Dave Boxrud, Randall S. Singer, Jason P. Folster, Timothy J. Johnson
Software Mentions: 7
Published: about 6 years ago

10.1128/mSphere.00670-20

Natural Infection with Giardia Is Associated with Altered Community Structure of the Human and Canine Gut Microbiome
Cited by: 26
Author(s): Alexander S. F. Berry, Keegan S. Johnson, Rene Martins, Megan C. Sullivan, Camila Farias Amorim, Alexandra Putre, Aiysha Scott, Shuai Wang, Brianna Lindsay, Robert N. Baldassano, Thomas J. Nolan, Daniel P. Beiting
Software Mentions: 7
Published: almost 6 years ago

10.1525/collabra.116

Individual Importance Weighting of Domain Satisfaction Ratings does Not Increase Validity
Cited by: 21
Author(s): Julia M. Rohrer, Stefan C. Schmukle
Software Mentions: 7
Published: over 8 years ago

10.1002/ece3.5025

Spatiotemporal variability in the structure of seagrass meadows and associated macrofaunal assemblages in southwest England (UK): Using citizen science to benchmark ecological pattern
Cited by: 7
Author(s): Dan A. Smale, Graham Epstein, Mark Parry, Martin J. Attrill
Software Mentions: 7
Published: over 7 years ago

10.1128/mSphereDirect.00073-17

OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units
Cited by: 312
Author(s): Sarah L. Westcott, Patrick D. Schloss
Software Mentions: 7
Published: about 9 years ago

10.3389/fmicb.2020.577474

Dietary Emulsifiers Alter Composition and Activity of the Human Gut Microbiota in vitro, Irrespective of Chemical or Natural Emulsifier Origin
Cited by: 25
Author(s): Lisa Miclotte, Kim De Paepe, Leen Rymenans, Chris Callewaert, Jeroen Raes, Andreja Rajković, John Van Camp, Tom Van de Wiele
Software Mentions: 7
Published: over 5 years ago

10.1128/mBio.00905-21

Functional and Comparative Analysis of Centromeres Reveals Clade-Specific Genome Rearrangements in Candida auris and a Chromosome Number Change in Related Species
Cited by: 10
Author(s): Aswathy Narayanan, Rakesh Netha Vadnala, Promit Ganguly, Pavitra Selvakumar, Shivaprakash M Rudramurthy, Rajendra Prasad, Arunaloke Chakrabarti, Rahul Siddharthan, Kaustuv Sanyal
Software Mentions: 7
Published: almost 5 years ago

10.1016/j.lanepe.2021.100029

Adverse events of interest following influenza vaccination, a comparison of cell culture-based with egg-based alternatives: English sentinel network annual report paper 2019/20
Cited by: 6
Author(s): Simon de Lusignan, Ruby S M Tsang, Gayatri Amirthalingam, Oluwafunmi Akinyemi, Julian Sherlock, Manasa Tripathy, Alexandra Deeks, Filipa Ferreira, Gary Howsam, F D Richard Hobbs, Mark Joy
Software Mentions: 7
Published: over 5 years ago

10.1128/mSphere.00593-18

The Phylogenomic Diversity of Herbivore-Associated Fibrobacter spp. Is Correlated to Lignocellulose-Degrading Potential
Cited by: 28
Author(s): Anthony P. Neumann, Garret Suen
Software Mentions: 7
Published: over 7 years ago

10.3390/s20133612

Assessing the Activity of Individual Group-Housed Broilers Throughout Life Using a Passive Radio Frequency Identification System—A Validation Study
Cited by: 20
Author(s): M. van der Sluis, Y. de Haas, B. de Klerk, T.B. Rodenburg, E.D. Ellen
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-021-98926-5

Quantitative assessment of multiple fish species around artificial reefs combining environmental DNA metabarcoding and acoustic survey
Cited by: 22
Author(s): Masaaki Sato, Nariaki Inoue, Ryogen Nambu, Naoki Furuichi, Tsutomu Imaizumi, Masayuki Ushio
Software Mentions: 7
Published: over 4 years ago

10.1002/cam4.4189

Predicting the immune landscape of invasive breast carcinoma based on the novel signature of immune‐related lncRNA
Cited by: 7
Author(s): Shuang Shen, Xin Chen, Xiaochi Hu, Jinlong Huo, Libo Luo, Xuezhi Zhou
Software Mentions: 7
Published: almost 5 years ago

10.1002/cam4.3434

The clinical value and potential molecular mechanism of the downregulation of MAOA in hepatocellular carcinoma tissues
Cited by: 20
Author(s): Yu‐Yan Pang, Jian‐Di Li, Gao Li, Xia Yang, Yi‐Wu Dang, Zhiyong Lai, Li‐Min Liu, Jie Yang, Huayu Wu, Rong‐Quan He, Zhi‐Guang Huang, Dandan Xiong, Lihua Yang, Lin Shi, Wei‐Jia Mo, Deng Tang, Huiping Lu, Gang Chen
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-021-97678-6

Neutrophil-to-lymphocyte ratio and monocyte-to-lymphocyte ratio predict length of hospital stay in myocarditis
Cited by: 16
Author(s): Moritz Mirna, Lukas Schmutzler, Albert Topf, Uta C. Hoppe, Michael Lichtenauer
Software Mentions: 7
Published: almost 5 years ago

10.3389/fpsyt.2021.668297

Estimating the Prevalence and Genetic Risk Mechanisms of ARFID in a Large Autism Cohort
Cited by: 26
Author(s): Tanner Koomar, Taylor Thomas, Natalie R. Pottschmidt, Michael Lutter, Jacob J. Michaelson
Software Mentions: 7
Published: about 5 years ago

10.18632/aging.101912

The widespread increase in inter-individual variability of gene expression in the human brain with age
Cited by: 19
Author(s): Veronika R. Kedlian, Handan Melike Dönertaş, Janet M. Thornton
Software Mentions: 7
Published: about 7 years ago

10.3389/fmicb.2020.592189

From Forest Soil to the Canopy: Increased Habitat Diversity Does Not Increase Species Richness of Cercozoa and Oomycota in Tree Canopies
Cited by: 6
Author(s): Robin-Tobias Jauss, Susanne Walden, Anna Maria Fiore‐Donno, Kenneth Dumack, Stefan Schaffer, Ronny Wolf, Martin Schlegel, Michael Bonkowski
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0241691

Succinivibrionaceae is dominant family in fecal microbiota of Behçet’s Syndrome patients with uveitis
Cited by: 12
Author(s): Duygu Tecer, Feride Göğüş, Ayşe Kalkancı, Merve Erdoğan, Murat Hasanreisoğlu, Çağrı Ergin, Tarkan Karakan, Ramazan Kozan, Serhat Emre Coban, Kadir Serdar Diker
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-021-95668-2

Short-term cell death in tissues of Pulsatilla vernalis seeds from natural and ex situ conserved populations
Cited by: 0
Author(s): Katarzyna M. Zielińska, Andrzej Kaźmierczak, Ewa Michalska
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41419-021-03540-y

Metabolomic analyses of COVID-19 patients unravel stage-dependent and prognostic biomarkers
Cited by: 99
Author(s): François‐Xavier Danlos, Claudia Grajeda‐Iglesias, Sylvère Durand, Allan Sauvat, Mathilde Roumier, D. Cantin, Emeline Colomba, Julien Rohmer, Fanny Pommeret, Giulia Baciarello, Christophe Willekens, Marc Vasse, Franck Griscelli, Jean-Eudes Fahrner, Anne-Gaëlle Goubet, Agathe Dubuisson, Lisa Derosa, Nitharsshini Nirmalathasan, Delphine Bredel, Séverine Mouraud, Caroline Pradon, Annabelle Stoclin, Flore Rozenberg, Jérôme Duchemin, Georges Jourdi, Syrine Ellouze, Françoise Levavasseur, Laurence Albigès, Jean‐Charles Soria, Fabrice Barlési, Éric Solary, Fabrice André, Frédéric Pène, Félix Ackerman, Luc Mouthon, Laurence Zitvogel, Aurélien Marabelle, Jean‐Marie Michot, Michaëla Fontenay, Guido Kroemer
Software Mentions: 7
Published: over 5 years ago

10.1186/s12864-019-6162-7

Transcriptome analysis of the differential effect of the NADPH oxidase gene RbohB in Phaseolus vulgaris roots following Rhizobium tropici and Rhizophagus irregularis inoculation
Cited by: 11
Author(s): Citlali Fonseca-García, Alejandra E. Zayas, Jesús Montiel, Noreide Nava, Federico Sánchez, Carmen Quinto
Software Mentions: 7
Published: over 6 years ago

10.3389/fmolb.2021.645845

A Novel Defined Risk Signature of the Ferroptosis-Related Genes for Predicting the Prognosis of Ovarian Cancer
Cited by: 23
Author(s): Ying Yang, Qinjin Dai, Shuhong Li, Jie He, Hongbo Qi
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-021-88662-1

A network analysis of crab metamorphosis and the hypothesis of development as a process of unfolding of an intensive complexity
Cited by: 2
Author(s): Agustín Ostachuk
Software Mentions: 7
Published: about 5 years ago

10.1186/s12859-015-0608-y

affy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism calling
Cited by: 3
Author(s): Carles Hernandez‐Ferrer, Inés Quintela, Katharina Danielski, Ángel Carracedo, Luis A. Pérez‐Jurado, Juan R. González
Software Mentions: 7
Published: about 11 years ago

10.18632/aging.103671

Target RNA modification for epigenetic drug repositioning in neuroblastoma: computational omics proximity between repurposing drug and disease
Cited by: 6
Author(s): Pei Ma, Lifeng Yue, Sen Zhang, Da‐Cheng Hao, Zhihong Wu, Lijia Xu, Guanhua Du, Pei‐Gen Xiao
Software Mentions: 7
Published: over 5 years ago

10.3389/fpls.2021.695867

Comparing Exogenous Methods to Induce Plant-Resistance Against a Bark-Feeding Insect
Cited by: 3
Author(s): Yayuan Chen, Adriana Puentes, Christer Björkman, Agnès Brosset, Helena Bylund
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-021-85855-6

Developing a non-destructive metabarcoding protocol for detection of pest insects in bulk trap catches
Cited by: 29
Author(s): Jana Batovska, Alexander M. Piper, Isabel Valenzuela, John Paul Cunningham, Mark J. Blacket
Software Mentions: 7
Published: about 5 years ago

10.1186/s12902-021-00732-7

Incidence and prognostic factors of primary thyroid lymphoma and construction of prognostic models for post-chemotherapy and postoperative patients: a population-based study
Cited by: 1
Author(s): Nan Xiang, Fangyuan Dong, Xuebing Zhan, Shuhan Wang, Junjie Wang, Entao Sun, Bing Chen
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pntd.0006044

Exploratory metabolomics study of the experimental opisthorchiasis in a laboratory animal model (golden hamster, Mesocricetus auratus)
Cited by: 15
Author(s): Daria Kokova, Sarantos Kostidis, Judit Morello, Nataly Dementeva, Ekaterina A. Perina, V. V. Ivanov, Л. М. Огородова, А. Э. Сазонов, Irina V. Saltykova, Oleg A. Mayboroda
Software Mentions: 7
Published: over 8 years ago

10.18632/aging.202278

Identification of long non-coding RNA signatures for squamous cell carcinomas and adenocarcinomas
Cited by: 0
Author(s): Suyan Tian, Mingbo Tang, Jialin Li, Chi Wang, Wei Liu
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-021-87368-8

Alteration of the gut fecal microbiome in children living with HIV on antiretroviral therapy in Yaounde, Cameroon
Cited by: 12
Author(s): William Baiye Abange, Casey Martin, Aubin Nanfack, Laeticia Grace Yatchou, Nichole M. Nusbacher, Clement Assob Nguedia, Hortense Gonsu Kamga, Joseph Fokam, Sean Kennedy, Alexis Ndjolo, Catherine Lozupone, Céline Nguefeu Nkenfou
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-021-88694-7

Tumor mutation burden (TMB)-associated signature constructed to predict survival of lung squamous cell carcinoma patients
Cited by: 13
Author(s): Yan Duan, Yi Chen
Software Mentions: 7
Published: about 5 years ago

10.1002/1878-0261.12911

LncRNA NKX2‐1‐AS1 promotes tumor progression and angiogenesis via upregulation of SERPINE1 expression and activation of the VEGFR‐2 signaling pathway in gastric cancer
Cited by: 39
Author(s): Fei Teng, Ju‐Xiang Zhang, Yi Chen, Xiaodong Shen, Chang Su, Yanjiao Guo, Pu‐Hua Wang, Chencheng Shi, Ming Lei, Yiou Cao, Shao‐Qun Liu
Software Mentions: 7
Published: over 5 years ago

10.3389/fimmu.2019.00488

The Association Between Vitamin D and Multiple Sclerosis Risk: 1,25(OH)2D3 Induces Super-Enhancers Bound by VDR
Cited by: 24
Author(s): Ming Lu, Bennet J McComish, Kathryn P. Burdon, Bruce Taylor, Heinrich Körner
Software Mentions: 7
Published: over 7 years ago

10.3389/fimmu.2021.617163

The Changes of Leukocytes in Brain and Blood After Intracerebral Hemorrhage
Cited by: 14
Author(s): Shuhao Mei, Yijie Shao, Yuanjian Fang, Jianing Lu, Jingwei Zheng, Shenbin Xu, Haijian Wu, Zeyu Sun, Jun Yu, Sheng Chen, Zhen Wang, Jianmin Zhang
Software Mentions: 7
Published: over 5 years ago

10.1186/s12859-017-1619-7

Meta-analysis approach as a gene selection method in class prediction: does it improve model performance? A case study in acute myeloid leukemia
Cited by: 4
Author(s): Putri W. Novianti, Victor L. Jong, Kit C. B. Roes, Marinus J.C. Eijkemans
Software Mentions: 7
Published: about 9 years ago

10.18632/aging.202982

Prognostic value of members of NFAT family for pan-cancer and a prediction model based on NFAT2 in bladder cancer
Cited by: 4
Author(s): Zhou-Tong Dai, Xiang Yuan, Yundan Wang, Lidao Bao, Jun Wang, Jiapeng Li, Huimin Zhang, Zhongxin Lu, Sreenivasan Ponnambalam, Xing–Hua Liao
Software Mentions: 7
Published: about 5 years ago

10.3389/fimmu.2018.01444

Elucidating T Cell Activation-Dependent Mechanisms for Bifurcation of Regulatory and Effector T Cell Differentiation by Multidimensional and Single-Cell Analysis
Cited by: 10
Author(s): Alla Bradley, Takeji Hashimoto, M. Ono
Software Mentions: 7
Published: almost 8 years ago

10.1371/journal.pntd.0005050

Factors Associated with the Time of Admission among Notified Dengue Fever Cases in Region VIII Philippines from 2008 to 2014
Cited by: 5
Author(s): J Abello, Julita Gil Cuesta, Boyd Roderick Cerro, Debarati Guha-Sapir
Software Mentions: 7
Published: over 9 years ago

10.18632/aging.202269

Immune profile of the tumor microenvironment and the identification of a four-gene signature for lung adenocarcinoma
Cited by: 15
Author(s): Tao Fan, Mark Zhu, Li-Yu Wang, Yu Liu, He Tian, Zheng Yang, Fengwei Tan, Nan Sun, Chunxiang Li, Jie He
Software Mentions: 7
Published: over 5 years ago

10.3389/fimmu.2020.609891

Targeted De-Methylation of the FOXP3-TSDR Is Sufficient to Induce Physiological FOXP3 Expression but Not a Functional Treg Phenotype
Cited by: 26
Author(s): Christopher Kressler, Gilles Gasparoni, Karl Nordström, Dania Hamo, Abdulrahman Salhab, Christoforos Dimitropoulos, Sascha Tierling, Petra Reinke, Hans‐Dieter Volk, Jörn Walter, Alf Hamann, Julia K. Polansky
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0230945

Timescales of variation in diversity and production of bacterioplankton assemblages in the Lower Mississippi River
Cited by: 3
Author(s): Jason T. Payne, Colin R. Jackson, Justin Millar, Clifford A. Ochs
Software Mentions: 7
Published: about 6 years ago

10.1186/s12906-018-2136-6

Is fasting safe? A chart review of adverse events during medically supervised, water-only fasting
Cited by: 40
Author(s): John S. Finnell, Bradley Saul, Alan Goldhamer, Toshia R. Myers
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pntd.0005729

Dengue prediction by the web: Tweets are a useful tool for estimating and forecasting Dengue at country and city level
Cited by: 70
Author(s): Cecilia Marques-Toledo, Carolin Marlen Degener, Livia Vinhal, Giovanini Evelim Coelho, Wagner Meira, Cláudia Torres Codeço, Mauro Martins Teixeira
Software Mentions: 7
Published: almost 9 years ago

10.3389/fimmu.2020.596514

Intestinal Transcriptome Analysis Reveals Soy Derivative-Linked Changes in Atlantic Salmon
Cited by: 26
Author(s): Viswanath Kiron, Youngjin Park, Prabhugouda Siriyappagouder, Dalia Dahle, Ghana Kalerammana Vasanth, Jorge Dias, Jorge M. O. Fernandes, Mette Sørensen, Viviane Verlhac Trichet
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2019.02037

Macroalga-Derived Alginate Oligosaccharide Alters Intestinal Bacteria of Atlantic Salmon
Cited by: 41
Author(s): S. R. Gupta, Jep Lokesh, Yousri Abdelhafiz, Prabhugouda Siriyappagouder, Ronan Pierre, Mette Sørensen, Jorge M. O. Fernandes, Viswanath Kiron
Software Mentions: 7
Published: almost 7 years ago

10.1038/s41598-021-80970-w

Breath can discriminate tuberculosis from other lower respiratory illness in children
Cited by: 19
Author(s): Carly A. Bobak, Lili Kang, Lesley Workman, Lindy Bateman, Mohammad Sharif Khan, Margaretha Prins, Lloyd May, Flavio A. Franchina, Cynthia Baard, Mark P. Nicol, Heather J. Zar, Jane E. Hill
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0208874

Assessing sound symbolism: Investigating phonetic forms, visual shapes and letter fonts in an implicit bouba-kiki experimental paradigm
Cited by: 5
Author(s): Léa De Carolis, Egidio Marsico, Vincent Arnaud, Christophe Coupé
Software Mentions: 7
Published: over 7 years ago

10.15252/msb.20209652

A substrate‐based ontology for human solute carriers
Cited by: 24
Author(s): Eva Meixner, Ulrich Goldmann, Vitaly Sedlyarov, Stefania Scorzoni, Manuele Rebsamen, Enrico Gottardi, Giulio Superti‐Furga
Software Mentions: 7
Published: almost 6 years ago

10.1155/2021/5538643

A Network Pharmacology and Molecular Docking Strategy to Explore Potential Targets and Mechanisms Underlying the Effect of Curcumin on Osteonecrosis of the Femoral Head in Systemic Lupus Erythematosus
Cited by: 4
Author(s): Pan Kang, Zhigen Wu, Yue Zhong, Zihao Wang, Chi Zhou, Shaochuan Huo, Hai Bin Guo, Songtao Li, Kun Xu, Ling-yun Liu, Shuai Chen, Hong-Yu Tang, Haibin Wang
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12935-021-02050-3

Constructe a novel 5 hypoxia genes signature for cervical cancer
Cited by: 13
Author(s): Yang Yang, Yaling Li, Ruiqun Qi, Lan Zhang
Software Mentions: 7
Published: almost 5 years ago

10.3389/fmicb.2018.01604

Increased Numbers of Culturable Inhibitory Bacterial Taxa May Mitigate the Effects of Batrachochytrium dendrobatidis in Australian Wet Tropics Frogs
Cited by: 18
Author(s): Sara C. Bell, SM Garland, Ross A. Alford
Software Mentions: 7
Published: almost 8 years ago

10.1155/2021/2628824

A Potential ceRNA Network for Neurological Damage in Preterm Infants
Cited by: 7
Author(s): Hui‐Zi Jin, Xinlan Liang, Zhenyu Cai
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-020-63186-2

Socially engaged calves are more likely to be colonised by VTEC O157:H7 than individuals showing signs of poor welfare
Cited by: 4
Author(s): Lena-Mari Tamminen, C. Reed Hranac, Johan Dicksved, Erik Eriksson, Ulf Emanuelson, Linda J. Keeling
Software Mentions: 7
Published: about 6 years ago

10.3390/cancers13092102

Integration of Urinary EN2 Protein & Cell-Free RNA Data in the Development of a Multivariable Risk Model for the Detection of Prostate Cancer Prior to Biopsy
Cited by: 4
Author(s): Shea P. Connell, Robert Mills, Hardev Pandha, Richard Morgan, Christopher S. Cooper, Jeremy Clark, Daniel Brewer
Software Mentions: 7
Published: about 5 years ago

10.1155/2020/7147824

Construction of Protein-related Risk Score Model in Bladder Urothelial Carcinoma
Cited by: 5
Author(s): Qizhan Luo, Xiaobo Zhang
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-020-63565-9

Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape
Cited by: 36
Author(s): Bryan Nguyen, Elaine W. Shen, Janina Seemann, Adrienne M. S. Correa, James L. O’Donnell, Andrew H. Altieri, Nancy Knowlton, Keith A. Crandall, Scott P. Egan, W. Owen McMillan, Matthieu Leray
Software Mentions: 7
Published: about 6 years ago

10.18632/aging.203017

Identification of key transcriptome biomarkers based on a vital gene module associated with pathological changes in Alzheimer’s disease
Cited by: 11
Author(s): Tong Zhang, Yang Shen, Yiqing Guo, Junyan Yao
Software Mentions: 7
Published: about 5 years ago

10.1155/2020/2837906

Integrative Analysis of Three Novel Competing Endogenous RNA Biomarkers with a Prognostic Value in Lung Adenocarcinoma
Cited by: 7
Author(s): Juan Tan, Weimin Wang, Bin Song, Yawei Song, Zili Meng
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-020-61645-4

The Impact of Voice Leading and Harmony on Musical Expectancy
Cited by: 3
Author(s): Leona Wall, Robert Lieck, Markus Neuwirth, Martin Rohrmeier
Software Mentions: 7
Published: about 6 years ago

10.3389/fimmu.2020.01166

Non-sterilizing, Infection-Permissive Vaccination With Inactivated Influenza Virus Vaccine Reshapes Subsequent Virus Infection-Induced Protective Heterosubtypic Immunity From Cellular to Humoral Cross-Reactive Immune Responses
Cited by: 6
Author(s): Angela Choi, Lorena Itatí Ibáñez, Shirin Strohmeier, Florian Krammer, Adolfo Garcı́a-Sastre, Michael Schotsaert
Software Mentions: 7
Published: about 6 years ago

10.1186/s12885-020-06777-6

The DNA hypermethylation phenotype of colorectal cancer liver metastases resembles that of the primary colorectal cancers
Cited by: 11
Author(s): Stephany Orjuela, Mirco Menigatti, Peter Schraml, Patryk Kambakamba, Mark D. Robinson, Giancarlo Marra
Software Mentions: 7
Published: about 6 years ago

10.1186/s12885-020-07345-8

Identification of a metabolism-related gene expression prognostic model in endometrial carcinoma patients
Cited by: 19
Author(s): Pinping Jiang, Wei Sun, Ningmei Shen, Xin Huang, Shilong Fu
Software Mentions: 7
Published: almost 6 years ago

10.3389/fimmu.2020.02149

CXCL4 Links Inflammation and Fibrosis by Reprogramming Monocyte-Derived Dendritic Cells in vitro
Cited by: 23
Author(s): Sandra Silva-Cardoso, Weiyang Tao, Chiara Angiolilli, Ana P Lopes, Cornelis P. J. Bekker, Abhinandan Devaprasad, Barbara Giovannone, Jaap van Laar, Marta Cossu, Wioleta Marut, Erik Hack, Rob J. de Boer, Marianne Boes, Timothy R D J Radstake, Aridaman Pandit
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41419-021-04067-y

Single cell transcriptomics reveal trans-differentiation of pancreatic beta cells following inactivation of the TFIID subunit Taf4
Cited by: 6
Author(s): Thomas Kleiber, Guillaume Davidson, Gabrielle Mengus, Igor Martianov, Irwin Davidson
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-020-60546-w

Inadequate socialisation, inactivity, and urban living environment are associated with social fearfulness in pet dogs
Cited by: 45
Author(s): Jenni Puurunen, Emma Hakanen, Milla Salonen, Salla Mikkola, Sini Sulkama, Cynthia Gobbi Alves Araújo, Hannes Lohi
Software Mentions: 7
Published: over 6 years ago

10.1186/s12894-021-00795-7

Comprehensive analysis of tumour mutational burden and its clinical significance in prostate cancer
Cited by: 14
Author(s): Limin Wang, Shucheng Pan, Binbin Zhu, Zhenliang Yu, Wei Wang
Software Mentions: 7
Published: over 5 years ago

10.1186/s12879-016-1475-5

DotMapper: an open source tool for creating interactive disease point maps
Cited by: 17
Author(s): Catherine M. Smith, Andrew Hayward
Software Mentions: 7
Published: about 10 years ago

10.1155/2018/3149495

Development of Regional Disparities in Alzheimer’s Disease Mortality in the Slovak Republic from 1996 to 2015
Cited by: 2
Author(s): Beata Gavurová, Viliam Kováč, D Jarcusková
Software Mentions: 7
Published: over 7 years ago

10.12688/f1000research.16032.3

epiflows: an R package for risk assessment of travel-related spread of disease
Cited by: 3
Author(s): Paula Moraga, Ilaria Dorigatti, Zhian N. Kamvar, Paweł Piątkowski, Salla Toikkanen, VP Nagraj, Christl A. Donnelly, Thibaut Jombart
Software Mentions: 7
Published: almost 7 years ago

10.3389/fimmu.2021.694680

Gene Set Enrichment Analysis Reveals Individual Variability in Host Responses in Tuberculosis Patients
Cited by: 5
Author(s): Teresa Domaszewska, Joanna Żyła, Raik Otto, Stefan H. E. Kaufmann, January Weiner
Software Mentions: 7
Published: almost 5 years ago

10.3389/fimmu.2020.578505

Preparing for Life: Plasma Proteome Changes and Immune System Development During the First Week of Human Life
Cited by: 18
Author(s): Tue Bjerg Bennike, Benoit Fatou, Asimenia Angelidou, Joann Diray‐Arce, Reza Falsafi, Rebecca Ford, Erin E. Gill, Simon D. van Haren, Olubukola T. Idoko, Ahwon Lee, Rym Ben‐Othman, William Pomat, Casey P. Shannon, Kinga K. Smolen, Scott J. Tebbutt, Al Ozonoff, Peter Richmond, Anita H. J. van den Biggelaar, Robert E. W. Hancock, Beate Kampmann, Tobias R. Kollmann, Ofer Levy, Hanno Steen
Software Mentions: 7
Published: over 5 years ago

10.1186/s12862-021-01821-w

Phylogenetic history influences convergence for a specialized ecology: comparative skull morphology of African burrowing skinks (Squamata; Scincidae)
Cited by: 7
Author(s): Natasha Stepanova, Aaron M. Bauer
Software Mentions: 7
Published: about 5 years ago

10.3390/vaccines7030113

TIV Vaccination Modulates Host Responses to Influenza Virus Infection that Correlate with Protection against Bacterial Superinfection
Cited by: 5
Author(s): Angela Choi, Ioanna Christopoulou, Xavier Saelens, Adolfo Garcı́a-Sastre, Michael Schotsaert
Software Mentions: 7
Published: almost 7 years ago

10.18632/aging.202490

Long non-coding RNA TP73-AS1 is a potential immune related prognostic biomarker for glioma
Cited by: 8
Author(s): Bo Zhang, Qinglin Li, Bin Wu, Shuyuan Zhang, Liwen Liu, Kai Jin, Sheng Li, Kai Li, Zeng Wang, Yi Lu, Xiaofeng Liang, Chao Sun
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2021.685937

Metagenomic Survey of the Highly Polyphagous Anastrepha ludens Developing in Ancestral and Exotic Hosts Reveals the Lack of a Stable Microbiota in Larvae and the Strong Influence of Metamorphosis on Adult Gut Microbiota
Cited by: 10
Author(s): Martı́n Aluja, Jesús Alejandro Zamora‐Briseño, Vicente Pérez‐Brocal, Alma Altúzar-Molina, Larissa Guillén, Damaris Desgarennes, Mirna Vázquez-Rosas-Landa, Enrique Ibarra-Laclette, Alexandro Alonso-Sánchez, Andrés Moya
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-018-29373-y

Experimentally induced metamorphosis in highly regenerative axolotl (ambystoma mexicanum) under constant diet restructures microbiota
Cited by: 25
Author(s): Turan Demircan, Guvanch Ovezmyradov, Berna Yıldırım, İlknur Keskin, Ayşe Elif İlhan, Ece Cana Fesçioğlu, Gürkan Öztürk, Süleyman Yıldırım
Software Mentions: 7
Published: almost 8 years ago

10.1007/s00572-020-01001-6

Phosphate availability and ectomycorrhizal symbiosis with Pinus sylvestris have independent effects on the Paxillus involutus transcriptome
Cited by: 6
Author(s): Christina Paparokidou, Jonathan R. Leake, David J. Beerling, Stephen A. Rolfe
Software Mentions: 7
Published: over 5 years ago

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