cran: cowplot | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0216723

A metadata approach to evaluate the state of ocean knowledge: Strengths, limitations, and application to Mexico
Cited by: 10
Author(s): Juliano Palacios‐Abrantes, Andrés M. Cisneros‐Montemayor, Miguel Á. Cisneros-Mata, Laura Rodríguez, Francisco Arreguı́n-Sánchez, Verónica Aguilar, Santiago Domínguez-Sánchez, Stuart Fulton, Raquel López-Sagástegui, Héctor Reyes‐Bonilla, Rocío Rivera-Campos, Silvia Salas, Nuno Simões, William W. L. Cheung
Software Mentions: 10
Published: over 5 years ago

10.1186/s13071-020-04461-z

Oviposition of Aedes japonicus japonicus (Diptera: Culicidae) and associated native species in relation to season, temperature and land use in western Germany
Cited by: 12
Author(s): Linus Früh, Helge Kampen, Marcel B. Koban, Nadja Pernat, Günter A. Schaub, Doreen Werner
Software Mentions: 10
Published: almost 4 years ago

10.3389/fmicb.2021.685263

Exploring the Potential of Micrococcus luteus Culture Supernatant With Resuscitation-Promoting Factor for Enhancing the Culturability of Soil Bacteria
Cited by: 9
Author(s): Marco Antonio Lopez Marin, Michal Strejcek, Petra Junková, Jáchym Šuman, Jiří Šantrůček, Ondřej Uhlík
Software Mentions: 10
Published: over 3 years ago

10.1371/journal.pone.0191601

Highly multiplexed single-cell quantitative PCR
Cited by: 12
Author(s): Michael VanInsberghe, Hans Zahn, Alexander D. White, Oleh I. Petriv, Carl L. Hansen
Software Mentions: 10
Published: almost 7 years ago

10.1038/s42003-019-0646-5

Histone acetylation orchestrates wound-induced transcriptional activation and cellular reprogramming in Arabidopsis
Cited by: 59
Author(s): Bart Rymen, Ayako Kawamura, Alice Lambolez, Soichi Inagaki, Arika Takebayashi, Akira Iwase, Yuki Sakamoto, Kaori Sako, David S. Favero, Momoko Ikeuchi, Takamasa Suzuki, Masanori Seki, Tetsuji Kakutani, François Roudier, Keiko Sugimoto
Software Mentions: 10
Published: about 5 years ago

10.1016/j.isci.2021.102768

Spatially resolved sampling for untargeted metabolomics: A new tool for salivomics
Cited by: 4
Author(s): Alessio Ciurli, Maximiliam Liebl, Rico Derks, Jacques Neefjes, Martin Giera
Software Mentions: 10
Published: over 3 years ago

10.3389/fmicb.2020.01190

Genetic Organization of the aprX-lipA2 Operon Affects the Proteolytic Potential of Pseudomonas Species in Milk
Cited by: 14
Author(s): Christopher Maier, Christopher Huptas, Mario von Neubeck, Stephen W. Scherer, Mareike Wenning, Genia Lücking
Software Mentions: 10
Published: over 4 years ago

10.1002/ece3.6594

A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analyses
Cited by: 36
Author(s): Devon O’Rourke, Nicholas A. Bokulich, Michelle A. Jusino, Matthew D. MacManes, Jeffrey T. Foster
Software Mentions: 10
Published: over 4 years ago

10.3389/fimmu.2021.722860

Transcriptional Changes in Regulatory T Cells From Patients With Autoimmune Polyendocrine Syndrome Type 1 Suggest Functional Impairment of Lipid Metabolism and Gut Homing
Cited by: 1
Author(s): A Berger, Eirik Bratland, Thea Sjøgren, Marte Heimli, Torgeir Tyssedal, Øyvind Bruserud, Stefan Johansson, Eystein S. Husebye, Bergithe E. Oftedal, Anette Susanne Bøe Wolff
Software Mentions: 10
Published: about 3 years ago

10.3389/fmicb.2020.587972

DNA-Stable Isotope Probing Shotgun Metagenomics Reveals the Resilience of Active Microbial Communities to Biochar Amendment in Oxisol Soil
Cited by: 11
Author(s): Julian Yu, Michael J. Pavia, Lauren M. Deem, Susan E. Crow, Jonathan Deenik, C. Ryan Penton
Software Mentions: 9
Published: about 4 years ago

10.1093/gigascience/giy083

Clustering trees: a visualization for evaluating clusterings at multiple resolutions
Cited by: 353
Author(s): Luke Zappia, Alicia Oshlack
Software Mentions: 9
Published: over 6 years ago

10.1038/s41598-021-81051-8

Summer weather conditions influence winter survival of honey bees (Apis mellifera) in the northeastern United States
Cited by: 37
Author(s): Martina Calovi, Christina M. Grozinger, Douglas A. Miller, Sarah C. Goslee
Software Mentions: 9
Published: almost 4 years ago

10.7717/peerj.5217

Avian community characteristics and demographics reveal how conservation value of regenerating tropical dry forest changes with forest age
Cited by: 8
Author(s): Steven C. Latta, Nathan L. Brouwer, Danilo Mejía, María M. Paulino
Software Mentions: 9
Published: over 6 years ago

10.7717/peerj.4473

pcr: an R package for quality assessment, analysis and testing of qPCR data
Cited by: 72
Author(s): Mahmoud Ahmed, Deok Ryong Kim
Software Mentions: 9
Published: over 6 years ago

10.1098/rspb.2018.0270

Evolutionary adaptation to aquatic lifestyle in extinct sloths can lead to systemic alteration of bone structure
Cited by: 20
Author(s): Eli Amson, Guillaume Billet, Christian de Muizon
Software Mentions: 9
Published: over 6 years ago

10.1111/1755-0998.13030

DeviaTE: Assembly‐free analysis and visualization of mobile genetic element composition
Cited by: 26
Author(s): Lukas Weilguny, Robert Kofler
Software Mentions: 9
Published: over 5 years ago

10.1371/journal.pone.0192157

Tissue analyses reveal a potential immune-adjuvant function of FAP-1 positive fibroblasts in non-small cell lung cancer
Cited by: 30
Author(s): Thomas K. Kilvaer, Mehrdad Rakaee, Turid Hellevik, Arne Östman, Carina Strell, Roy M. Bremnes, Lill-Tove Busund, Tom Dønnem, Iñigo Martínez-Zubiaurre
Software Mentions: 9
Published: almost 7 years ago

10.3390/pathogens10091221

Prevalence of Vector-Borne Pathogens in Reproductive and Non-Reproductive Tissue Samples from Free-Roaming Domestic Cats in the South Atlantic USA
Cited by: 5
Author(s): Charlotte Manvell, Kelli Ferris, Ricardo G. Maggi, Edward B. Breitschwerdt, Erin Lashnits
Software Mentions: 9
Published: about 3 years ago

10.1038/s41598-020-72007-5

Individual differences in fear acquisition: multivariate analyses of different emotional negativity scales, physiological responding, subjective measures, and neural activation
Cited by: 30
Author(s): Rachel Sjouwerman, Robert Scharfenort, Tina B. Lonsdorf
Software Mentions: 9
Published: about 4 years ago

10.3389/fmicb.2020.556793

Sulfate Alters the Competition Among Microbiome Members of Sediments Chronically Exposed to Asphalt
Cited by: 3
Author(s): Antonios Michas, Mourad Harir, Marianna Lucio, Gisle Vestergaard, Anne M. Himmelberg, Philippe Schmitt‐Kopplin, Tillmann Lueders, Dimitris G. Hatzinikolaou, Anne Schöler, Ralf Rabus, Michael Schloter
Software Mentions: 9
Published: about 4 years ago

10.3389/fpsyg.2020.599788

Faster Visual Information Processing in Video Gamers Is Associated With EEG Alpha Amplitude Modulation
Cited by: 5
Author(s): Yannik Hilla, Jörg von Mankowski, Julia Föcker, Paul Sauseng
Software Mentions: 9
Published: almost 4 years ago

10.1038/s41598-020-74647-z

Passive acoustic listening stations (PALS) show rapid onset of ecological effects of harmful algal blooms in real time
Cited by: 9
Author(s): Athena M. Rycyk, Reny B. Tyson Moore, Randall S. Wells, Katherine McHugh, Elizabeth J. Berens McCabe, David A. Mann
Software Mentions: 9
Published: about 4 years ago

10.1038/s41598-020-59292-w

Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering
Cited by: 5
Author(s): Johanne Ahrenfeldt, Madina Waisi, Isabella Charlotte Loft, Philip Thomas Lanken Conradsen Clausen, Rosa Lundbye Allesøe, Judit Szarvas, René S. Hendriksen, Frank Møller Aarestrup, Ole Lund
Software Mentions: 9
Published: almost 5 years ago

10.1038/s41598-019-53903-x

Proteome characterization of used nesting material and potential protein sources from group housed male mice, Mus musculus
Cited by: 16
Author(s): Amanda J. Barabas, Uma K. Aryal, Brianna N. Gaskill
Software Mentions: 9
Published: almost 5 years ago

10.1371/journal.pone.0251280

Middle ratings rise regardless of grammatical construction: Testing syntactic variability in a repeated exposure paradigm
Cited by: 3
Author(s): J. M. M. Brown, Gisbert Fanselow, R. Vance Hall, Reinhold Kliegl
Software Mentions: 8
Published: over 3 years ago

10.3389/fmicb.2018.00570

SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments
Cited by: 37
Author(s): Nicholas D. Youngblut, Samuel E. Barnett, Daniel H. Buckley
Software Mentions: 8
Published: over 6 years ago

10.3389/fcvm.2020.575275

Reactivation of Atrium Genes Is a Primer for Heart Infarction or Regeneration
Cited by: 1
Author(s): Yang Zhen
Software Mentions: 8
Published: about 4 years ago

10.3390/v11060492

Culex torrentium: A Potent Vector for the Transmission of West Nile Virus in Central Europe
Cited by: 33
Author(s): Stéphanie Jansen, Anna Heitmann, Renke Lühken, Mayke Leggewie, Michelle Helms, Marlis Badusche, Giada Rossini, Jonas Schmidt‐Chanasit, Egbert Tannich
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2019.01805

Fishing in the Soup – Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing
Cited by: 44
Author(s): Josephine Grützke, Burkhard Malorny, Jens A. Hammerl, Anne Busch, Simon H. Tausch, Herbert Tomaso, Carlus Deneke
Software Mentions: 8
Published: over 5 years ago

10.18632/aging.202157

Development and validation of prognostic nomograms for early-onset locally advanced colon cancer
Cited by: 21
Author(s): Yuqiang Li, Wenxue Liu, Zhongyi Zhou, Heming Ge, Lilan Zhao, Heli Liu, Xiangping Song, Dan Wang, Qian Pei, Fengbo Tan
Software Mentions: 8
Published: almost 4 years ago

10.1172/jci.insight.130510

Asymmetric cell division promotes therapeutic resistance in glioblastoma stem cells
Cited by: 19
Author(s): Masahiro Hitomi, Anastasia Chumakova, Daniel J. Silver, Arnon Møldrup Knudsen, William Pontius, Shaun Murphy, Neha Anand, Bjarne Winther Kristensen, Justin D. Lathia
Software Mentions: 8
Published: almost 4 years ago

10.1186/s13073-019-0615-0

Single-cell analysis reveals congruence between kidney organoids and human fetal kidney
Cited by: 144
Author(s): Alexander N. Combes, Luke Zappia, Pei X. Er, Alicia Oshlack, Melissa H. Little
Software Mentions: 8
Published: almost 6 years ago

10.1371/journal.pone.0197370

Immunity levels to poliovirus in Lao children and adults before the vaccine-derived poliovirus outbreak: A retrospective study
Cited by: 2
Author(s): Maude Pauly, Antony P. Black, Phonepaseuth Khampanisong, Phonethipsavanh Nouanthong, Judith M. Hübschen, Naphavanh Nanthavong, Kong Sayasinh, Prapan Jutavijittum, Bounthome Samountry, Anonh Xeuatvongsa, Sabine Diedrich, Claude P. Muller
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-020-59062-8

Sting nematodes modify metabolomic profiles of host plants
Cited by: 4
Author(s): Denis S. Willett, Camila C. Filgueiras, Nicole Benda, Jing Zhang, Kevin E. Kenworthy
Software Mentions: 8
Published: almost 5 years ago

10.1186/s12863-020-00936-1

Separating two tightly linked species-defining phenotypes in Bactrocera with hybrid recombinant analysis
Cited by: 7
Author(s): Heng Lin Yeap, Siu Fai Lee, Freya Robinson, Roslyn Mourant, J. A. Sved, Michael Frommer, Alexie Papanicolaou, Owain Edwards, John G. Oakeshott
Software Mentions: 8
Published: almost 4 years ago

10.7554/eLife.55797

Dopaminergic and opioidergic regulation during anticipation and consumption of social and nonsocial rewards
Cited by: 32
Author(s): Sebastian Korb, Sebastian Jakob Götzendorfer, Claudia Massaccesi, Patrick Sezen, Irene Graf, Matthäus Willeit, Christoph Eisenegger, Giorgia Silani
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0211692

The impact of bipedal mechanical loading history on longitudinal long bone growth
Cited by: 7
Author(s): A. D. Foster
Software Mentions: 7
Published: almost 6 years ago

10.3390/jpm11060582

Body Mass Index and Birth Weight Improve Polygenic Risk Score for Type 2 Diabetes
Cited by: 11
Author(s): Avigail Moldovan, Yedael Y. Waldman, Nadav Brandes, Michal Linial
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0239081

Diazotrophic bacteria from maize exhibit multifaceted plant growth promotion traits in multiple hosts
Cited by: 11
Author(s): Shawn M. Higdon, Tania Pozzo, Emily J. Tibbett, Colleen Chiu, Richard Jeannotte, Bart C. Weimer, A. B. Bennett
Software Mentions: 7
Published: about 4 years ago

10.1038/s41598-021-87368-8

Alteration of the gut fecal microbiome in children living with HIV on antiretroviral therapy in Yaounde, Cameroon
Cited by: 12
Author(s): William Baiye Abange, Casey Martin, Aubin Nanfack, Laeticia Grace Yatchou, Nichole M. Nusbacher, Clement Assob Nguedia, Hortense Gonsu Kamga, Joseph Fokam, Sean Kennedy, Alexis Ndjolo, Catherine Lozupone, Céline Nguefeu Nkenfou
Software Mentions: 7
Published: over 3 years ago

10.3390/v12010078

Antibody Responses against Enterovirus Proteases are Potential Markers for an Acute Infection
Cited by: 7
Author(s): Niila V. V. Saarinen, Virginia M. Stone, Minna M. Hankaniemi, Magdalena A. Mazur, Tytti Vuorinen, Malin Flodström‐Tullberg, Heikki Hyöty, Vesa P. Hytönen, Olli H. Laitinen
Software Mentions: 7
Published: almost 5 years ago

10.1186/s13054-021-03503-x

Fluid proteomics of CSF and serum reveal important neuroinflammatory proteins in blood–brain barrier disruption and outcome prediction following severe traumatic brain injury: a prospective, observational study
Cited by: 26
Author(s): Caroline Lindblad, Elisa Pin, David R. Just, Faiez Al Nimer, Peter Nilsson, Bo‐Michael Bellander, Mikael Svensson, Fredrik Piehl, Eric Peter Thelin
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-020-80157-9

Climate change impact on the potential geographical distribution of two invading Xylosandrus ambrosia beetles
Cited by: 25
Author(s): Teddy Urvois, Marie‐Anne Auger‐Rozenberg, Alain Roques, Jean‐Pierre Rossi, Carole Kerdelhué
Software Mentions: 7
Published: almost 4 years ago

10.3390/md18080379

Laminariales Host Does Impact Lipid Temperature Trajectories of the Fungal Endophyte Paradendryphiella salina (Sutherland.)
Cited by: 2
Author(s): Marine Vallet, Tarik Méziane, Najet Thiney, Soizic Prado, Cédric Hubas
Software Mentions: 7
Published: over 4 years ago

10.1038/s41598-020-73826-2

Enhanced emotional and motor responses to live versus videotaped dynamic facial expressions
Cited by: 8
Author(s): Chun‐Ting Hsu, Wataru Sato, Sakiko Yoshikawa
Software Mentions: 7
Published: about 4 years ago

10.3389/fvets.2021.695948

Who's the Boss? Assessing Convergent Validity of Aggression Based Dominance Measures in Male Laboratory Mice, Mus Musculus
Cited by: 5
Author(s): Amanda J. Barabas, Jeffrey R. Lucas, Marisa A. Erasmus, Heng-Wei Cheng, Brianna N. Gaskill
Software Mentions: 7
Published: over 3 years ago

10.7554/eLife.69661

Integrated single-cell analysis unveils diverging immune features of COVID-19, influenza, and other community-acquired pneumonia
Cited by: 9
Author(s): Alex R. Schuurman, Tom D. Y. Reijnders, Anno Saris, Ivan Ramirez‐Moral, Michiel Schinkel, Justin de Brabander, Christine van Linge, Louis Vermeulen, Brendon P. Scicluna, W. Joost Wiersinga, Felipe A. Vieira Braga, Tom van der Poll
Software Mentions: 7
Published: about 3 years ago

10.3390/biom11050704

Into the Deep: New Data on the Lipid and Fatty Acid Profile of Redfish Sebastes mentella Inhabiting Different Depths in the Irminger Sea
Cited by: 12
Author(s): Viktor P. Voronin, Н. Н. Немова, Т. Р. Руоколайнен, Д. В. Артеменков, Aleksei Y. Rolskii, А. М. Орлов, С. А. Мурзина
Software Mentions: 7
Published: over 3 years ago

10.3389/fgene.2021.737656

Integrated Analysis of the Expression Characteristics, Prognostic Value, and Immune Characteristics of PPARG in Breast Cancer
Cited by: 5
Author(s): Jianbin Wu, Mingmin Luo, Zhuangwei Chen, Lei Li, Xiaoxi Huang
Software Mentions: 7
Published: about 3 years ago

10.1371/journal.ppat.1008864

Using Plasmodium knowlesi as a model for screening Plasmodium vivax blood-stage malaria vaccine targets reveals new candidates
Cited by: 14
Author(s): Duncan Ndungu Ndegwa, Prasun Kundu, Jessica B. Hostetler, Alejandro Marín-Menéndez, Theo Sanderson, Kioko Mwikali, Lisa Verzier, Rachael Coyle, Sophie H. Adjalley, Julian C. Rayner
Software Mentions: 7
Published: over 3 years ago

10.3390/nu13020303

Investigation of Iron and Zinc Concentrations in Human Milk in Correlation to Maternal Factors: An Observational Pilot Study in Poland
Cited by: 7
Author(s): Agnieszka Bzikowska‐Jura, Piotr Sobieraj, Magdalena Michalska-Kacymirow, Aleksandra Wesołowska
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12915-021-01134-w

Comparative analysis reveals within-population genome size variation in a rotifer is driven by large genomic elements with highly abundant satellite DNA repeat elements
Cited by: 7
Author(s): Claus‐Peter Stelzer, Julie Blommaert, Ann‐Marie Waldvogel, Maria Pichler, Bette Hecox-Lea, David Welch
Software Mentions: 7
Published: about 3 years ago

10.3389/fphys.2018.01553

High-Intensity Exercise Mitigates Cardiovascular Deconditioning During Long-Duration Bed Rest
Cited by: 21
Author(s): Martina Anna Maggioni, Paolo Castiglioni, Giampiero Merati, Katharina Brauns, Hanns‐Christian Gunga, Stefan Mendt, Oliver Opatz, Lea C. Rundfeldt, Mathias Steinach, Anika Werner, Alexander Stahn
Software Mentions: 7
Published: about 6 years ago

10.3389/fpls.2020.602645

Bradyrhizobium as the Only Rhizobial Inhabitant of Mung Bean (Vigna radiata) Nodules in Tropical Soils: A Strategy Based on Microbiome for Improving Biological Nitrogen Fixation Using Bio-Products
Cited by: 11
Author(s): Vinício Oliosi Favero, Rita Hilário de Carvalho, Victória Monteiro da Motta, Ana Beatriz Carneiro Leite, Márcia Reed Rodrigues Coelho, Gustavo Ribeiro Xavier, Norma Gouvêa Rumjanek, Segundo Urquiaga
Software Mentions: 7
Published: almost 4 years ago

10.3389/fpsyg.2019.03013

Language Processing as a Precursor to Language Change: Evidence From Icelandic
Cited by: 9
Author(s): Ina Bornkessel‐Schlesewsky, Dietmar Roehm, Robert Mailhammer
Software Mentions: 7
Published: almost 5 years ago

10.1080/19490976.2021.1921924

The microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes
Cited by: 15
Author(s): Fergus W. J. Collins, Calum J. Walsh, Beatriz Gómez‐Sala, E. Guijarro-García, David J. Stokes, Klara B. Jakobsdóttir, Kristján Kristjánsson, Finlay Burns, Paul D. Cotter, Mary C. Rea, Colin Hill, R. Paul Ross
Software Mentions: 7
Published: almost 4 years ago

10.1128/mSphereDirect.00073-17

OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units
Cited by: 312
Author(s): Sarah L. Westcott, Patrick D. Schloss
Software Mentions: 7
Published: over 7 years ago

10.1128/mSphere.00169-17

Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes
Cited by: 52
Author(s): Alexandra M. Linz, Benjamin C. Crary, Ashley Shade, Sarah M. Owens, Jack A. Gilbert, Rob Knight, Katherine D. McMahon
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pntd.0006044

Exploratory metabolomics study of the experimental opisthorchiasis in a laboratory animal model (golden hamster, Mesocricetus auratus)
Cited by: 15
Author(s): Daria Kokova, Sarantos Kostidis, Judit Morello, Nataly Dementeva, Ekaterina A. Perina, V. V. Ivanov, Л. М. Огородова, А. Э. Сазонов, Irina V. Saltykova, Oleg A. Mayboroda
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.pntd.0008015

Plasma metabolomics of the time resolved response to Opisthorchis felineus infection in an animal model (golden hamster, Mesocricetus auratus)
Cited by: 9
Author(s): Daria Kokova, Aswin Verhoeven, Ekaterina A. Perina, В. В. Иванов, Elena M. Knyazeva, Irina V. Saltykova, Oleg A. Mayboroda
Software Mentions: 7
Published: almost 5 years ago

10.1093/aobpla/plaa059

Defoliation severity is positively related to soil solution nitrogen availability and negatively related to soil nitrogen concentrations following a multi-year invasive insect irruption
Cited by: 4
Author(s): Emma Conrad-Rooney, Audrey Barker Plotkin, Valerie J. Pasquarella, Joseph S. Elkinton, Jennifer L. Chandler, Jaclyn Hatala Matthes
Software Mentions: 6
Published: about 4 years ago

10.1002/ece3.7991

Long‐term changes in occurrence, relative abundance, and reproductive fitness of bat species in relation to arrival of White‐nose Syndrome in West Virginia, USA
Cited by: 9
Author(s): Catherine Johnson, Donald J. Brown, C. J. Sanders, Craig W. Stihler
Software Mentions: 6
Published: over 3 years ago

10.1016/j.cub.2020.05.007

The Evolution of Mass Cell Suicide in Bacterial Warfare
Cited by: 30
Author(s): Elisa T. Granato, Kevin R. Foster
Software Mentions: 6
Published: over 4 years ago

10.1016/j.celrep.2021.108990

Stabilized epithelial phenotype of cancer cells in primary tumors leads to increased colonization of liver metastasis in pancreatic cancer
Cited by: 39
Author(s): Julienne L. Carstens, Stephen C. Yang, Pedro Corrêa de Sampaio, Xiaofeng Zheng, Souptik Barua, Kathleen M. McAndrews, Arvind Rao, Jared K. Burks, Andrew D. Rhim, Raghu Kalluri
Software Mentions: 6
Published: over 3 years ago

10.1186/s13071-019-3606-5

Comparative analysis of subsampling methods for large mosquito samples
Cited by: 3
Author(s): Linda Jaworski, Stéphanie Jansen, Wolf Peter Pfitzner, Matthias Beck, Norbert Becker, Jonas Schmidt‐Chanasit, Ellen Kiel, Renke Lühken
Software Mentions: 6
Published: over 5 years ago

10.1128/mSphere.00535-21

A Comprehensive Map of Mycobacterium tuberculosis Complex Regions of Difference
Cited by: 11
Author(s): Dmitry Bespiatykh, Julia Bespyatykh, Igor Mokrousov, Egor Shitikov
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pone.0199758

Antipsychotic prescribing patterns on admission to and at discharge from a tertiary care program for treatment-resistant psychosis
Cited by: 7
Author(s): Lik Hang N. Lee, Ric M. Procyshyn, Ralph de Vere White, Todd S. Woodward, William G. Honer, Alasdair M. Barr
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pcbi.1007305

Long-term dynamics of measles in London: Titrating the impact of wars, the 1918 pandemic, and vaccination
Cited by: 13
Author(s): Alexander D. Becker, Amy Wesolowski, Ottar N. Bjørnstad, Bryan T. Grenfell
Software Mentions: 6
Published: about 5 years ago

10.3390/jpm11030183

Maternal Psychological and Biological Factors Associated to Gestational Complications
Cited by: 10
Author(s): David Ramiro-Cortijo, María de la Calle, Vanesa Benítez, Andrea Gila-Díaz, Bernardo Moreno‐Jiménez, Silvia M. Arribas, Eva Garrosa
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-87643-8

Reaction lumping in metabolic networks for application with thermodynamic metabolic flux analysis
Cited by: 1
Author(s): Lea Seep, Zahra Razaghi-Moghadam, Zoran Nikoloski
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-019-45844-2

Intracellular Zn2+ transients modulate global gene expression in dissociated rat hippocampal neurons
Cited by: 35
Author(s): Lynn Sanford, Margaret C. Carpenter, Amy E. Palmer
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0200462

Is increased colorectal screening effective in preventing distant disease?
Cited by: 5
Author(s): Gaius J. Augustus, Denise J. Roe, Elizabeth T. Jacobs, Peter Lance, Nathan A. Ellis
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-019-45365-y

Xylella fastidiosa: climate suitability of European continent
Cited by: 56
Author(s): Gottfried Martin, Astrid Cruaud, Jean‐Claude Streito, Jean‐Yves Rasplus, Jean‐Pierre Rossi
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pmed.1003084

Quantification of glucose-6-phosphate dehydrogenase activity by spectrophotometry: A systematic review and meta-analysis
Cited by: 29
Author(s): Daniel Pfeffer, Benedikt Ley, Rosalind E. Howes, Patrick Adu, Mohammad Shafiul Alam, Pooja Bansil, Yap Boum, Marcelo Augusto Mota Brito, Pimlak Charoenkwan, Archie Clements, Liwang Cui, Zeshuai Deng, OJ Egesie, Fe Esperanza Espino, Michael E. von Fricken, Muzamil Mahdi Abdel Hamid, Yongshu He, Gisela Henriques, Wasif Ali Khan, Nimol Khim, Saorin Kim, Marcus Lacerda, Chanthap Lon, Asrat Hailu Mekuria, Didier Ménard, Wuelton Marcelo Monteiro, François Nosten, Nwe Nwe Oo, Sampa Pal, Duangdao Palasuwan, Sunil Parikh, Ayodhia Pitaloka Pasaribu, Jeanne Rini Poespoprodjo, David J. Price, Arantxa Roca-Feltrer, Michelle E. Roh, David Saunders, Michele Spring, Inge Sutanto, Kamala Ley-Thriemer, Thomas A. Weppelmann, Lorenz von Seidlein, Ari Winasti Satyagraha, Germana Bancone, Gonzalo J. Domingo, Ric Price
Software Mentions: 6
Published: over 4 years ago

10.3389/fpls.2020.00759

The Importance of Incorporating Landscape Change for Predictions of Climate-Induced Plant Phenological Shifts
Cited by: 0
Author(s): Chelsea Chisholm, Michael Becker, W. H. Pollard
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-021-90409-x

High-throughput phenotyping methods for quantifying hair fiber morphology
Cited by: 1
Author(s): Tina Lasisi, Arslan Zaidi, Timothy H. Webster, Nicholas Stephens, Kendall Routch, Nina G. Jablonski, Mark D. Shriver
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0223147

Gibberellic acid in Citrus spp. flowering and fruiting: A systematic review
Cited by: 22
Author(s): Alfonso Garmendia, Roberto Beltrán, Carlos Zornoza, Francisco J. García‐Breijo, José Luis Peset Reig, Hugo Merlé
Software Mentions: 6
Published: about 5 years ago

10.1098/rsos.201955

Phylogenetic analyses of ray-finned fishes (Actinopterygii) using collagen type I protein sequences
Cited by: 8
Author(s): Virginia L. Harvey, Joseph N. Keating, Michael Buckley
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-99441-3

Potential impacts of polymetallic nodule removal on deep-sea meiofauna
Cited by: 8
Author(s): Ellen Pape, Tânia Campinas Bezerra, Hendrik Gheerardyn, Marius Buydens, Amanda Kieswetter, Ann Vanreusel
Software Mentions: 6
Published: about 3 years ago

10.7717/peerj.1971

PKC in motorneurons underlies self-learning, a form of motor learning in<i>Drosophila</i>
Cited by: 13
Author(s): Julien Colomb, Bjoern Brembs
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-020-65223-6

Using an Innovation Arena to compare wild-caught and laboratory Goffin’s cockatoos
Cited by: 19
Author(s): Theresa Rößler, Berenika Mioduszewska, Mark O’Hara, Ludwig Huber, Dewi M. Prawiradilaga, Alice M. I. Auersperg
Software Mentions: 6
Published: over 4 years ago

10.1007/s00265-020-02948-4

The cost of associating with males for Bornean and Sumatran female orangutans: a hidden form of sexual conflict?
Cited by: 8
Author(s): Julia Kunz, Guilhem J. Duvot, Maria A. van Noordwijk, Erik P. Willems, M. T. Townsend, Neneng Mardianah, Sri Suci Utami Atmoko, Erin R. Vogel, R. Taufiq Purna Nugraha, Michael Heistermann, Muhammad Agil, Tony Weingrill, Carel P. van Schaik
Software Mentions: 6
Published: almost 4 years ago

10.7554/eLife.07597

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems
Cited by: 184
Author(s): Rubén Rellán‐Álvarez, Guillaume Lobet, Heike Lindner, Pierre-Luc Pradier, José Sebastián, Muh-Ching Yee, Yu Geng, Charlotte Trontin, Therese LaRue, Amanda Schrager‐Lavelle, Cara H. Haney, Rita Nieu, Julin Maloof, John P. Vogel, José R. Dinneny
Software Mentions: 6
Published: over 9 years ago

10.3390/ijms20246303

Mitochondrial Bioenergetics in Brain Following Ozone Exposure in Rats Maintained on Coconut, Fish and Olive Oil-Rich Diets
Cited by: 14
Author(s): Matthew C. Valdez, Danielle L. Freeborn, Joseph M. Valdez, Andrew F.M. Johnstone, Samantha J. Snow, Alan Tennant, Urmila P. Kodavanti, Prasada Rao S. Kodavanti
Software Mentions: 6
Published: almost 5 years ago

10.3389/fbioe.2018.00200

Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources
Cited by: 17
Author(s): Felix Bracharz, Daniel Helmdach, Isabel Aschenbrenner, Nils Funck, Daniel Wibberg, Anderson M. Winkler, Frank Bohnen, Jörn Kalinowski, Norbert Mehlmer, Thomas Brück
Software Mentions: 6
Published: almost 6 years ago

10.1186/s40168-021-01006-z

Combined effects of composting and antibiotic administration on cattle manure–borne antibiotic resistance genes
Cited by: 26
Author(s): Ishi Keenum, Robert Williams, Partha Pratim Ray, Emily Garner, Katharine F. Knowlton, Amy Pruden
Software Mentions: 6
Published: over 3 years ago

10.1128/mSystems.00613-20

Interplay between Position-Dependent Codon Usage Bias and Hydrogen Bonding at the 5ʹ End of ORFeomes
Cited by: 6
Author(s): Juan C. Villada, Maria F. Duran, Patrick K. H. Lee
Software Mentions: 6
Published: about 4 years ago

10.3389/fpsyg.2018.01761

The Role of Musical Attributes in Music-Induced Analgesia: A Preliminary Brief Report
Cited by: 10
Author(s): Krzysztof Basiński, Agata Zdun-Ryżewska, Mikołaj Majkowicz
Software Mentions: 6
Published: about 6 years ago

10.3390/microorganisms9010002

Genomic Analysis of Antimicrobial Resistance Genotype-to-Phenotype Agreement in Helicobacter pylori
Cited by: 15
Author(s): Tal Domanovich-Asor, Yair Motro, Boris Khalfin, Hillary A. Craddock, Avi Peretz, Jacob Moran-Gilad
Software Mentions: 6
Published: almost 4 years ago

10.1186/s13195-021-00768-w

Assessing individual-level change in dementia research: a review of methodologies
Cited by: 4
Author(s): Aja Louise Murray, Marlena Vollmer, Ian J. Deary, Graciela Muñiz‐Terrera, Tom Booth
Software Mentions: 6
Published: almost 4 years ago

10.1002/ece3.7100

Disentangling the links between habitat complexity and biodiversity in a kelp‐dominated subantarctic community
Cited by: 7
Author(s): Catalina Velasco‐Charpentier, Felipe Pizarro‐Mora, Nelso P. Navarro, Nelson Valdivia
Software Mentions: 6
Published: almost 4 years ago

10.1007/s40279-020-01373-x

An Update on Secular Trends in Physical Fitness of Children and Adolescents from 1972 to 2015: A Systematic Review
Cited by: 72
Author(s): Thea Fühner, Reinhold Kliegl, Fabian Arntz, Susi Kriemler, Urs Granacher
Software Mentions: 5
Published: about 4 years ago

10.1186/s12864-021-07924-4

Transcriptomic analysis to elucidate the effects of high stocking density on grass carp (Ctenopharyngodon idella)
Cited by: 10
Author(s): Yan He, Hongyan Yu, Hongling Zhao, Hua Zhu, Qingjing Zhang, Anqi Wang, Yubang Shen, Xiaoyan Xu, Jiale Li
Software Mentions: 5
Published: over 3 years ago

10.1098/rsbl.2021.0072

Temperature and pathogen exposure act independently to drive host phenotypic trajectories
Cited by: 8
Author(s): Tobias E. Hector, Carla M. Sgrò, Matthew D. Hall
Software Mentions: 5
Published: over 3 years ago

10.1186/s40168-021-01018-9

Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome
Cited by: 24
Author(s): Julien Tap, Stine Störsrud, Boris Le Nevé, Aurélie Cotillard, Nicolas Pons, Joël Doré, Lena Öhman, Hans Törnblom, Muriel Derrien, Magnus Simrén
Software Mentions: 5
Published: over 3 years ago

10.3390/microorganisms9091897

High Diversity of Leptospira Species Infecting Bats Captured in the Urabá Region (Antioquia-Colombia)
Cited by: 7
Author(s): Fernando P. Monroy, Sergio Solari, Juan A. López, Piedad Agudelo‐Flórez, Ronald Guillermo Peláez Sánchez
Software Mentions: 5
Published: about 3 years ago

10.7717/peerj.8141

Experimental evaluation of genomic DNA degradation rates for the pathogen <i>Pseudogymnoascus destructans</i> (Pd) in bat guano
Cited by: 5
Author(s): Jenny Urbina, Tara Chestnut, Donelle Schwalm, Jenn Allen, Taal Levi
Software Mentions: 5
Published: almost 5 years ago

10.1177/0146167220946187

The Association Between Threat and Politics Depends on the Type of Threat, the Political Domain, and the Country
Cited by: 24
Author(s): Mark J. Brandt, Felicity Mary Turner-Zwinkels, Beste Karapirinler, Florian van Leeuwen, Michael Bender, Yvette van Osch, Byron G. Adams
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0235851

Does laughing have a stress-buffering effect in daily life? An intensive longitudinal study
Cited by: 6
Author(s): Thea Zander-Schellenberg, Isabella Mutschler Collins, Marcel Miché, Charles R.G. Guttmann, Roselind Lieb, Karina Wahl
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0198342

Characterization of the fecal and mucosa-associated microbiota in dogs with colorectal epithelial tumors
Cited by: 25
Author(s): Kristin Marie Valand Herstad, Aina Elisabeth Fossum Moen, John Christian Gaby, Lars Moe, Ellen Skancke
Software Mentions: 5
Published: over 6 years ago

Projects: cran: cowplot

Papers Mentioning cowplot 298