Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13073-019-0615-0

https://doi.org/10.1186/s13073-019-0615-0

Single-cell analysis reveals congruence between kidney organoids and human fetal kidney

Cited by: 144
Author(s): Alexander N. Combes, Luke Zappia, Pei X. Er, Alicia Oshlack, Melissa H. Little
Published: almost 6 years ago

Software Mentions 8

bioconductor: biomaRt

Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446

bioconductor: scater

Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79

bioconductor: scran

Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113

bioconductor: SingleCellExperiment

S4 Classes for Single Cell Data
Papers that mentioned: 36

cran: cowplot

Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

cran: workflowr

A Framework for Reproducible and Collaborative Data Science
Papers that mentioned: 7