cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3390/life10090185

An Overview of Bioinformatics Tools for DNA Meta-Barcoding Analysis of Microbial Communities of Bioaerosols: Digest for Microbiologists
Cited by: 3
Author(s): Hamza Mbareche, Nathan Dumont-Leblond, Guillaume J. Bilodeau, Caroline Duchaine
Software Mentions: 7
Published: about 6 years ago

10.1038/s41598-020-63565-9

Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape
Cited by: 36
Author(s): Bryan Nguyen, Elaine W. Shen, Janina Seemann, Adrienne M. S. Correa, James L. O’Donnell, Andrew H. Altieri, Nancy Knowlton, Keith A. Crandall, Scott P. Egan, W. Owen McMillan, Matthieu Leray
Software Mentions: 7
Published: over 6 years ago

10.1186/s12936-017-1738-7

Change in Anopheles richness and composition in response to artificial flooding during the creation of the Jirau hydroelectric dam in Porto Velho, Brazil
Cited by: 9
Author(s): Moreno S. Rodrigures, Elis P. A. Batista, Alexandre de Almeida e Silva, Fábio Medeiros da Costa, Verissimo A. S. Neto, Luiz Herman Soares Gil
Software Mentions: 7
Published: over 9 years ago

10.1128/mBio.03396-20

Composition and Associations of the Infant Gut Fungal Microbiota with Environmental Factors and Childhood Allergic Outcomes
Cited by: 21
Author(s): Rozlyn C.T. Boutin, Hind Sbihi, Ryan J. McLaughlin, Aria S. Hahn, Kishori M. Konwar, Rachelle Loo, Darlene Dai, Charisse Petersen, Fiona S. L. Brinkman, Geoffrey L. Winsor, Malcolm R. Sears, Theo J. Moraes, Allan B. Becker, Meghan B. Azad, Piush J. Mandhane, Padmaja Subbarao, Stuart E. Turvey, B. Brett Finlay
Software Mentions: 7
Published: about 5 years ago

10.3389/fmicb.2020.00995

Microbiota in the Rhizosphere and Seed of Rice From China, With Reference to Their Transmission and Biogeography
Cited by: 31
Author(s): Xin Zhou, Jinting Wang, Z.F. Zhang, Wei Li, Wen Chen, Lei Cai
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0229146

Vegetation changes in temperate ombrotrophic peatlands over a 35 year period
Cited by: 20
Author(s): Nicolas Pinceloup, Monique Poulin, Marie‐Hélène Brice, Stéphanie Pellerin
Software Mentions: 7
Published: over 6 years ago

10.3389/fmicb.2021.569791

Biological Soil Crust Bacterial Communities Vary Along Climatic and Shrub Cover Gradients Within a Sagebrush Steppe Ecosystem
Cited by: 15
Author(s): Yaqi You, Ken Aho, Kathleen A. Lohse, Stacy G. Schwabedissen, Rhesa N. Ledbetter, Timothy S. Magnuson
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2021.660719

Changes in the Community Structure of Under-Ice and Open-Water Microbiomes in Urban Lakes Exposed to Road Salts
Cited by: 14
Author(s): Isabelle B. Fournier, Connie Lovejoy, Warwick F. Vincent
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2020.00789

Unraveling the Diversity of Eukaryotic Microplankton in a Large and Deep Perialpine Lake Using a High Throughput Sequencing Approach
Cited by: 18
Author(s): Nico Salmaso, Bruno Adriano, Massimo Pindo
Software Mentions: 7
Published: over 6 years ago

10.1111/pce.13520

Floral plasticity: Herbivore‐species‐specific‐induced changes in flower traits with contrasting effects on pollinator visitation
Cited by: 48
Author(s): Quint Rusman, Erik H. Poelman, Farzana Nowrin, G. Polder, Dani Lucas‐Barbosa
Software Mentions: 7
Published: over 7 years ago

10.1098/rsos.210035

Local versus site-level effects of algae on coral microbial communities
Cited by: 4
Author(s): Amy A. Briggs, A. L. Brown, Craig W. Osenberg
Software Mentions: 7
Published: about 5 years ago

10.3389/fmicb.2021.658116

Endophytic Fungal Community of Tobacco Leaves and Their Potential Role in the Formation of “Cherry-Red” Tobacco
Cited by: 4
Author(s): Yonglei Jiang, Xing Chen, Gaokun Zhao, Jiahong Liu, Yan Xie, Yong Li, Huaguo Gu, Congming Zou
Software Mentions: 7
Published: about 5 years ago

10.3390/microorganisms5040068

Linking Compositional and Functional Predictions to Decipher the Biogeochemical Significance in DFAA Turnover of Abundant Bacterioplankton Lineages in the North Sea
Cited by: 16
Author(s): Bernd Wemheuer, Franziska Wemheuer, Dimitri V. Meier, Sara Billerbeck, Helge-Ansgar Giebel, Meinhard Simon, Christoph Scherber, Rolf Daniel
Software Mentions: 7
Published: almost 9 years ago

10.1038/s41598-018-37026-3

Microbial embryonal colonization during pipefish male pregnancy
Cited by: 28
Author(s): Anne Beemelmanns, Maude Poirier, Till Bayer, Sven Kuenzel, Olivia Roth
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-019-43875-3

Gut microbiome differences between wild and captive black rhinoceros – implications for rhino health
Cited by: 77
Author(s): Keylie M. Gibson, Bryan Nguyen, Laura Neumann, Michele A. Miller, Peter Buss, Savel R. Daniels, Michelle Ahn, Keith A. Crandall, Budhan S. Pukazhenthi
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-019-43274-8

Multiple stressors interact primarily through antagonism to drive changes in the coral microbiome
Cited by: 55
Author(s): Rebecca L. Maher, Mallory M. Rice, Ryan McMinds, Deron E. Burkepile, Rebecca Vega Thurber
Software Mentions: 7
Published: over 7 years ago

10.3389/fmicb.2018.01604

Increased Numbers of Culturable Inhibitory Bacterial Taxa May Mitigate the Effects of Batrachochytrium dendrobatidis in Australian Wet Tropics Frogs
Cited by: 18
Author(s): Sara C. Bell, SM Garland, Ross A. Alford
Software Mentions: 7
Published: about 8 years ago

10.1038/s41598-021-84759-9

Swine growth promotion with antibiotics or alternatives can increase antibiotic resistance gene mobility potential
Cited by: 28
Author(s): Johanna Muurinen, Jacob A Richert, Carmen L. Wickware, B. T. Richert, Timothy A. Johnson
Software Mentions: 7
Published: over 5 years ago

10.1186/s40168-021-01012-1

Much ado about nothing? Off-target amplification can lead to false-positive bacterial brain microbiome detection in healthy and Parkinson’s disease individuals
Cited by: 25
Author(s): Janis R. Bedarf, Naiara Beraza, Hassan Khazneh, Ezgi Özkurt, David Baker, Valeri Borger, Ullrich Wüllner, Falk Hildebrand
Software Mentions: 7
Published: over 5 years ago

10.7717/peerj.8289

Substrate rugosity and temperature matters: patterns of benthic diversity at tropical intertidal reefs in the SW Atlantic
Cited by: 14
Author(s): Ana Carolina de Azevedo Mazzuco, Patricia Sarcinelli Stelzer, Ângelo F. Bernardino
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-019-46118-7

Unraveling the effects of the gut microbiota composition and function on horse endurance physiology
Cited by: 24
Author(s): Sandra Plancade, Allison Clark, Catherine Philippe, Jean‐Christophe Helbling, Marie‐Pierre Moisan, Diane Esquerré, Laurence Le Moyec, Céline Robert, Éric Barrey, Núria Mach
Software Mentions: 7
Published: about 7 years ago

10.7717/peerj.8103

Acquisition of fungi from the environment modifies ambrosia beetle mycobiome during invasion
Cited by: 33
Author(s): Davide Rassati, Lorenzo Marini, Antonino Malacrinò
Software Mentions: 7
Published: almost 7 years ago

10.3390/microorganisms8050677

The Bacterial Gut Microbiota of Adult Patients Infected, Colonized or Noncolonized by Clostridioides difficile
Cited by: 21
Author(s): Monique J. T. Crobach, Quinten R Ducarmon, Elisabeth M. Terveer, Céline Harmanus, Ingrid M J G Sanders, Kees Verduin, Ed J. Kuijper, Romy D. Zwittink
Software Mentions: 7
Published: over 6 years ago

10.1080/19490976.2021.1927634

Influence of pig farming on human Gut Microbiota: role of airborne microbial communities
Cited by: 5
Author(s): Julia Moor, Tsering Wüthrich, Suzanne Aebi, Nadezda Mostacci, Gudrun Overesch, Anne Oppliger, Markus Hilty
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-021-92513-4

High-throughput 16S rRNA gene sequencing of the microbial community associated with palm oil mill effluents of two oil processing systems
Cited by: 2
Author(s): Benedicte Ella Zranseu Aka, Theodore N. Djéni, Simon Laurent Tiemele Amoikon, Jan Kannengießer, Naaila Ouazzani, Marcellin Koffi Djè
Software Mentions: 7
Published: about 5 years ago

10.7717/peerj.7044

Skin bacterial communities of neotropical treefrogs vary with local environmental conditions at the time of sampling
Cited by: 19
Author(s): Angie Estrada, Myra C. Hughey, Daniel Medina, Eria A. Rebollar, Jenifer B. Walke, Reid N. Harris, Lisa K. Belden
Software Mentions: 7
Published: about 7 years ago

10.3389/fimmu.2020.599637

Fecal IgA, Antigen Absorption, and Gut Microbiome Composition Are Associated With Food Antigen Sensitization in Genetically Susceptible Mice
Cited by: 17
Author(s): Johanna M. Smeekens, Brandi T. Johnson‐Weaver, Andrew Hinton, M. Andrea Azcárate-Peril, Timothy P. Moran, R.M. Immormino, Janelle Kesselring, Erin C. Steinbach, Kelly Orgel, Herman F. Staats, A. Wesley Burks, Peter J. Mucha, Martin T. Ferris, Michael D. Kulis
Software Mentions: 7
Published: over 5 years ago

10.1186/s40168-018-0595-0

Skin and gut microbiomes of a wild mammal respond to different environmental cues
Cited by: 38
Author(s): Anton Lavrinienko, Eugene Tukalenko, Tapio Mappes, Phillip C. Watts
Software Mentions: 7
Published: almost 8 years ago

10.3389/fcimb.2020.00131

Dysbiosis in Peripheral Blood Mononuclear Cell Virome Associated With Systemic Lupus Erythematosus
Cited by: 4
Author(s): Gangqiang Guo, Lele Ye, Xinyu Shi, Kejing Yan, Jingjing Huang, Kangming Lin, Dong Xing, Sisi Ye, Yuqing Wu, Baoqing Li, Chaosheng Chen, Xiangyang Xue, Huidi Zhang
Software Mentions: 7
Published: over 6 years ago

10.1128/mSystems.01381-20

Biogeography, Assembly Patterns, Driving Factors, and Interactions of Archaeal Community in Mangrove Sediments
Cited by: 24
Author(s): Zhifeng Zhang, Jie Pan, Yue-Ping Pan, Meng Li
Software Mentions: 7
Published: about 5 years ago

10.1002/ece3.4194

Vertical canopy gradient shaping the stratification of leaf‐chewer–parasitoid interactions in a temperate forest
Cited by: 15
Author(s): Martin Šigut, Hana Šigutová, Ján Šipoš, Petr Pyszko, Nela Kotásková, Pavel Drozd
Software Mentions: 7
Published: about 8 years ago

10.3390/microorganisms6040096

Genotype-Environment Interaction Shapes the Microbial Assemblage in Grapevine’s Phyllosphere and Carposphere: An NGS Approach
Cited by: 37
Author(s): Prashant Singh, Sylvain Santoni, Patrice This, Jean‐Pierre Péros
Software Mentions: 7
Published: almost 8 years ago

10.3390/insects11060373

Susceptibility of Red Mason Bee Larvae to Bacterial Threats Due to Microbiome Exchange with Imported Pollen Provisions
Cited by: 22
Author(s): Anna Voulgari‐Kokota, Ingolf Steffan‐Dewenter, Alexander Keller
Software Mentions: 7
Published: over 6 years ago

10.7717/peerj.5319

Comparative chemical analysis of army ant mandibular gland volatiles (Formicidae: Dorylinae)
Cited by: 11
Author(s): Adrian Brückner, Philipp O. Hoenle, Christoph von Beeren
Software Mentions: 7
Published: about 8 years ago

10.1128/mSystems.00510-21

Dysbiosis of the Urinary Bladder Microbiome in Cats with Chronic Kidney Disease
Cited by: 5
Author(s): Younjung Kim, Maura Carrai, Marcus H. Y. Leung, Jaime Chin, Jun Li, Patrick K. H. Lee, Julia A. Beatty, Dirk U. Pfeiffer, Vanessa R. Barrs
Software Mentions: 7
Published: about 5 years ago

10.3390/insects12070647

Impact of Temperature on the Immune Interaction between a Parasitoid Wasp and Drosophila Host Species
Cited by: 3
Author(s): Fanny Cavigliasso, Jean‐Luc Gatti, Dominique Colinet, Marylène Poirié
Software Mentions: 7
Published: about 5 years ago

10.3389/fgene.2021.702695

Identification and Elucidation of the Protective isomiRs in Lung Cancer Patient Prognosis
Cited by: 1
Author(s): Fu-Mei Hsieh, Su-Ting Lai, Ming-Fong Wu, Chen-Ching Lin
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0237079

A core phyllosphere microbiome exists across distant populations of a tree species indigenous to New Zealand
Cited by: 17
Author(s): Anya Sophia Noble, Stevie Noe, Michael J. Clearwater, Charles K. Lee
Software Mentions: 7
Published: about 6 years ago

10.3390/insects12050374

Buzzing Homes: Using Citizen Science Data to Explore the Effects of Urbanization on Indoor Mosquito Communities
Cited by: 7
Author(s): Nadja Pernat, Helge Kampen, Jonathan M. Jeschke, Doreen Werner
Software Mentions: 7
Published: over 5 years ago

10.1128/mSystems.00811-21

Separation of Donor and Recipient Microbial Diversity Allows Determination of Taxonomic and Functional Features of Gut Microbiota Restructuring following Fecal Transplantation
Cited by: 4
Author(s): Evgenii I. Olekhnovich, A. B. Ivanov, Vladimir Ulyantsev, Elena Ilina
Software Mentions: 7
Published: about 5 years ago

10.3389/fmicb.2019.02621

Influence of Various Processing Parameters on the Microbial Community Dynamics, Metabolomic Profiles, and Cup Quality During Wet Coffee Processing
Cited by: 31
Author(s): Sophia Jiyuan Zhang, Florac De Bruyn, Vasileios Pothakos, Gonzalo F Contreras, Z. Y. Cai, Cyril Moccand, Stefan Weckx, Luc De Vuyst
Software Mentions: 7
Published: almost 7 years ago

10.1038/s41396-018-0176-z

Long-term in situ permafrost thaw effects on bacterial communities and potential aerobic respiration
Cited by: 64
Author(s): Sylvain Monteux, James T. Weedon, Gesche Blume‐Werry, Konstantin Gavazov, Vincent E. J. Jassey, Margareta Johansson, Frida Keuper, Carolina Olid, Ellen Dorrepaal
Software Mentions: 7
Published: over 8 years ago

10.7717/peerj.7038

Decoupled recovery of ecological communities after reclamation
Cited by: 3
Author(s): Zachary A. Sylvain, David H. Branson, Tatyana A. Rand, Natalie M. West, Erin K. Espeland
Software Mentions: 7
Published: about 7 years ago

10.1038/s41598-021-81668-9

Metagenomic analysis of the cow, sheep, reindeer and red deer rumen
Cited by: 23
Author(s): Laura Glendinning, Buğra Genç, R. J. Wallace, Mick Watson
Software Mentions: 7
Published: over 5 years ago

10.1186/s40168-019-0736-0

Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat
Cited by: 39
Author(s): Lydie Kerdraon, Matthieu Barret, Valérie Laval, Frédéric Suffert
Software Mentions: 7
Published: about 7 years ago

10.1038/s41598-018-37145-x

Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behavior
Cited by: 22
Author(s): Jean‐Baptiste Juhel, Laurent Vigliola, Laurent Wantiez, Tom B. Letessier, Jessica J. Meeuwig, David Mouillot
Software Mentions: 7
Published: over 7 years ago

10.1186/s40168-017-0374-3

Dietary energy drives the dynamic response of bovine rumen viral communities
Cited by: 63
Author(s): Christopher L. Anderson, Matthew B. Sullivan, Samodha C. Fernando
Software Mentions: 7
Published: almost 9 years ago

10.1186/s40104-021-00601-2

Supplementation of a lacto-fermented rapeseed-seaweed blend promotes gut microbial- and gut immune-modulation in weaner piglets
Cited by: 13
Author(s): Yan Hui, Paulina Tamez-Hidalgo, Tomasz Cieplak, Gizaw Dabessa Satessa, Witold Kot, Søren Kjærulff, Mette Olaf Nielsen, Dennis Sandris Nielsen, Łukasz Krych
Software Mentions: 7
Published: about 5 years ago

10.3389/fimmu.2019.00243

Diet in the Driving Seat: Natural Diet-Immunity-Microbiome Interactions in Wild Fish
Cited by: 16
Author(s): Ida M. Friberg, John D. Taylor, Joe Jackson
Software Mentions: 7
Published: over 7 years ago

10.1186/s40168-019-0677-7

Maize synthesized benzoxazinoids affect the host associated microbiome
Cited by: 160
Author(s): Enoch Narh Kudjordjie, Rumakanta Sapkota, Stine K. Steffensen, Inge S. Fomsgaard, Mogens Nicolaisen
Software Mentions: 7
Published: over 7 years ago

10.1098/rsos.170073

Predictors and immunological correlates of sublethal mercury exposure in vampire bats
Cited by: 44
Author(s): Daniel J. Becker, Matthew M. Chumchal, Alexandra B. Bentz, Steven G. Platt, Gábor Á. Czirják, Thomas R. Rainwater, Sonia Altizer, Daniel G. Streicker
Software Mentions: 7
Published: over 9 years ago

10.1111/mec.14931

The evolution of abdominal microbiomes in fungus‐growing ants
Cited by: 23
Author(s): Panagiotis Sapountzis, David R. Nash, Morten Schiøtt, Jacobus J. Boomsma
Software Mentions: 7
Published: almost 8 years ago

10.1111/mec.15724

Leech blood‐meal invertebrate‐derived DNA reveals differences in Bornean mammal diversity across habitats
Cited by: 19
Author(s): Rosie Drinkwater, Tommaso Jucker, Joshua H.T. Potter, Tom Swinfield, David A. Coomes, Eleanor M. Slade, M. Thomas P. Gilbert, Owen T. Lewis, Henry Bernard, Matthew J. Struebig, Elizabeth L. Clare, Stephen J. Rossiter
Software Mentions: 7
Published: almost 6 years ago

10.3389/fmicb.2021.685937

Metagenomic Survey of the Highly Polyphagous Anastrepha ludens Developing in Ancestral and Exotic Hosts Reveals the Lack of a Stable Microbiota in Larvae and the Strong Influence of Metamorphosis on Adult Gut Microbiota
Cited by: 10
Author(s): Martı́n Aluja, Jesús Alejandro Zamora‐Briseño, Vicente Pérez‐Brocal, Alma Altúzar-Molina, Larissa Guillén, Damaris Desgarennes, Mirna Vázquez-Rosas-Landa, Enrique Ibarra-Laclette, Alexandro Alonso-Sánchez, Andrés Moya
Software Mentions: 7
Published: about 5 years ago

10.3389/fmicb.2020.610009

Evidence That Microorganisms at the Animal-Water Interface Drive Sea Star Wasting Disease
Cited by: 28
Author(s): Citlalli A Aquino, Ryan M Besemer, Christopher M. DeRito, Jan Kocian, Ian Porter, Peter T. Raimondi, Jordan E Rede, Lauren M. Schiebelhut, Jed P. Sparks, John P. Wares, Ian Hewson
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2020.588778

Labile Dissolved Organic Matter Compound Characteristics Select for Divergence in Marine Bacterial Activity and Transcription
Cited by: 21
Author(s): Benjamin Pontiller, Sandra Martínez‐García, Daniel Lundin, Jarone Pinhassi
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0191781

Large-scale climatic phenomena drive fluctuations in macroinvertebrate assemblages in lowland tropical streams, Costa Rica: The importance of ENSO events in determining long-term (15y) patterns
Cited by: 23
Author(s): Pablo E. Gutiérrez‐Fonseca, Alonso Ramírez, Catherine M. Pringle
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0237272

Passenger-surface microbiome interactions in the subway of Mexico City
Cited by: 10
Author(s): Daniela Vargas-Robles, Carolina Gonzalez-Cedillo, Apolinar M. Hernández, Luis David Alcaraz, Mariana Peimbert
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-020-79835-5

Local knowledge as a tool for prospecting wild food plants: experiences in northeastern Brazil
Cited by: 11
Author(s): Patrícia Muniz de Medeiros, Gabriela Maria Cota dos Santos, Déborah Monteiro Barbosa, Laílson César Andrade Gomes, Élida Monique da Costa Santos, Rafael Ricardo Vasconcelos da Silva
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0235726

Diversity of mosquitoes (Diptera: Culicidae) collected in different types of larvitraps in an Amazon rural settlement
Cited by: 8
Author(s): João Aprígio Guerra de Almeida, Heliana Christy Matos Belchior, Claudia María Ríos-Velásquez, Felipe Arley Costa Pessoa
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-021-82379-x

Evidence for strong environmental control on bacterial microbiomes of Antarctic springtails
Cited by: 5
Author(s): Chiara Leo, Francesco Nardi, Claudio Cucini, Francesco Frati, Peter Convey, James T. Weedon, Dick Roelofs, Antonio Carapelli
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2019.02278

Assessment of Artificial and Natural Transport Mechanisms of Ice Nucleating Particles in an Alpine Ski Resort in Obergurgl, Austria
Cited by: 4
Author(s): Philipp Baloh, Nora Els, Robert O. David, Catherine Larose, Karin Whitmore, Birgit Sattler, Hinrich Grothe
Software Mentions: 6
Published: almost 7 years ago

10.3390/microorganisms8081225

Lactobacillus Mucosae Strain Promoted by a High-Fiber Diet in Genetic Obese Child Alleviates Lipid Metabolism and Modifies Gut Microbiota in ApoE-/- Mice on a Western Diet
Cited by: 19
Author(s): Tianyi Jiang, Huan Wu, Xin Yang, Yue Li, Ziyi Zhang, Feng Chen, Liping Zhao, Chenhong Zhang
Software Mentions: 6
Published: about 6 years ago

10.1186/s40168-021-01136-4

Longitudinal study on the effects of growth-promoting and therapeutic antibiotics on the dynamics of chicken cloacal and litter microbiomes and resistomes
Cited by: 24
Author(s): Chhedi Lal Gupta, Shlomo E. Blum, Karuppasamy Kattusamy, Tali Daniel, S. Druyan, Roni Shapira, O. Krifucks, Yan Zhu, Xinyuan Zhou, Jian‐Qiang Su, Eddie Cytryn
Software Mentions: 6
Published: about 5 years ago

10.3390/microorganisms6030068

Cloacal and Ocular Microbiota of the Endangered Australian Northern Quoll
Cited by: 2
Author(s): Catherine Burke, Delaney Burnard, Adam Polkinghorne, Jonathan K. Webb, Wilhelmina M. Huston
Software Mentions: 6
Published: about 8 years ago

10.1186/s40168-020-00954-2

Bacterial community assemblages in classroom floor dust of 50 public schools in a large city: characterization using 16S rRNA sequences and associations with environmental factors
Cited by: 10
Author(s): Ju‐Hyeong Park, Angela R. Lemons, Jerry Roseman, Brett J. Green, Jean M. Cox‐Ganser
Software Mentions: 6
Published: over 5 years ago

10.1186/s40168-016-0174-1

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure
Cited by: 163
Author(s): Isabelle Laforest‐Lapointe, Christian Messier, Steven W. Kembel
Software Mentions: 6
Published: over 10 years ago

10.1186/s40168-021-01031-y

Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals
Cited by: 25
Author(s): Tina Keller‐Costa, Asunción Lago‐Lestón, J. Saraiva, Rodolfo Brizola Toscan, Sandra Godinho Silva, Jorge M. S. Gonçalves, Cymon J. Cox, Nikos C. Kyrpides, Ulisses Nunes da Rocha, Rodrigo Costa
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8101566

The Prokaryotic Microbiome of Acropora digitifera is Stable under Short-Term Artificial Light Pollution
Cited by: 6
Author(s): Jake Ivan P. Baquiran, Michael Angelou L. Nada, Celine Luisa D. Campos, Sherry Lyn G. Sayco, Patrick C. Cabaitan, Yaeli Rosenberg, Inbal Ayalon, Oren Levy, Cecilia Conaco
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmicb.2018.01044

Environmental Control on Microbial Turnover of Leaf Carbon in Streams – Ecological Function of Phototrophic-Heterotrophic Interactions
Cited by: 9
Author(s): Jenny Fabian, Sanja Zlatanović, Michael Mutz, Hans‐Peter Grossart, Robert van Geldern, Andreas Ulrich, Gerd Gleixner, Katrin Premke
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0221408

Distinct temporal dynamics of planktonic archaeal and bacterial assemblages in the bays of the Yellow Sea
Cited by: 16
Author(s): Jong-Geol Kim, Joo-Han Gwak, Man‐Young Jung, Sung‐Uk An, Jung‐Ho Hyun, Sanghoon Kang, Sung‐Keun Rhee
Software Mentions: 6
Published: about 7 years ago

10.3390/microorganisms8030405

Agroforestry Management Systems Drive the Composition, Diversity, and Function of Fungal and Bacterial Endophyte Communities in Theobroma Cacao Leaves
Cited by: 19
Author(s): Franziska Wemheuer, Dirk Hölscher, Bernd Wemheuer, Rolf Daniel, Stefan Vidal, Hervé Bertin Bisseleua Daghela
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2020.01451

Bacterial and Fungal Dynamics During the Fermentation Process of Sesotho, a Traditional Beer of Southern Africa
Cited by: 19
Author(s): Errol D. Cason, Bokang John Mahlomaholo, Matšepo M. Taole, George Ooko Abong, Jan‐G Vermeulen, Olga de Smidt, Marcele Vermeulen, Laurinda Steyn, Ángel Valverde, Bennie C. Viljoen
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2021.665849

Decisive Effects of Life Stage on the Gut Microbiota Discrepancy Between Two Wild Populations of Hibernating Asiatic Toads (Bufo gargarizans)
Cited by: 3
Author(s): Xuehang Song, Jingwei Zhang, Jinghan Song, Yuanyuan Zhai
Software Mentions: 6
Published: about 5 years ago

10.1186/s40168-016-0218-6

The gut microbiota in conventional and serrated precursors of colorectal cancer
Cited by: 160
Author(s): Brandilyn A. Peters, Christine Dominianni, Jean A. Shapiro, Timothy R. Church, Jing Wu, George Miller, Elizabeth Yuen, Hal Freiman, Ian Lustbader, James Salik, Charles Friedlander, Richard B. Hayes, Jiyoung Ahn
Software Mentions: 6
Published: almost 10 years ago

10.1002/ece3.5361

Drivers and patterns of microbial community assembly in a Lyme disease vector
Cited by: 30
Author(s): Lisa I. Couper, Jessica Y. Kwan, Joyce Ma, Andrea Swei
Software Mentions: 6
Published: over 7 years ago

10.3390/microorganisms9020208

Aquatic Bacterial Diversity, Community Composition and Assembly in the Semi-Arid Inner Mongolia Plateau: Combined Effects of Salinity and Nutrient Levels
Cited by: 29
Author(s): Xiangming Tang, Guobo Xie, Kwang‐Tsao Shao, Wei Tian, Guang Gao, Boqiang Qin
Software Mentions: 6
Published: over 5 years ago

10.1186/s12284-021-00522-8

Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata)
Cited by: 11
Author(s): Jian Xie, Xiaoqing Wang, Jiawang Xu, Haizhu Xie, Yaohui Cai, Yizheng Liu, Xia Ding
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0242959

Primed to vocalize: Wild-derived male house mice increase vocalization rate and diversity after a previous encounter with a female
Cited by: 10
Author(s): Sarah M. Zala, Doris Nicolakis, Maria Adelaide Marconi, A. Michael Noll, T. Ruf, Péter Balázs, Dustin J. Penn
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0229001

Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome
Cited by: 45
Author(s): Samuel J. Bowers, Fernando Vargas, Antonio González, Shannon He, Peng Jiang, Pieter C. Dorrestein, Rob Knight, Kenneth P. Wright, Christopher A. Lowry, Monika Fleshner, Martha Hotz Vitaterna, Fred W. Turek
Software Mentions: 6
Published: over 6 years ago

10.1186/s40168-020-00917-7

Spatial heterogeneity of bacterial colonization across different gut segments following inter-species microbiota transplantation
Cited by: 56
Author(s): Na Li, Bo Zuo, Shimeng Huang, Benhua Zeng, Dandan Han, Tiantian Li, Ting Liu, Zhenhua Wu, Hong Wei, Jiangchao Zhao, Junjun Wang
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-019-45388-5

Identifying niche and fitness dissimilarities in invaded marine macroalgal canopies within the context of contemporary coexistence theory
Cited by: 9
Author(s): Graham Epstein, Stephen J. Hawkins, Dan A. Smale
Software Mentions: 6
Published: about 7 years ago

10.1186/s40168-019-0734-2

Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics
Cited by: 94
Author(s): Chengying Shi, Leen Beller, Ward Deboutte, Kwe Claude Yinda, Leen Delang, Anubis Vega-Rúa, Anna‐Bella Failloux, Jelle Matthijnssens
Software Mentions: 6
Published: about 7 years ago

10.1186/s40168-020-00943-5

Roundup causes embryonic development failure and alters metabolic pathways and gut microbiota functionality in non-target species
Cited by: 26
Author(s): Antonio Suppa, Jouni Kvist, Xiaojing Li, Vignesh Dhandapani, Hanan Almulla, Antoine Y. Tian, Stephen Kissane, Jian Zhou, Alessio Perotti, Hayley Mangelson, Kyle W. Langford, Valeria Rossi, James B. Brown, Luisa Orsini
Software Mentions: 6
Published: almost 6 years ago

10.1002/ece3.7181

Match and mismatch: Integrating consumptive effects of predators, prey traits, and habitat selection in colonizing aquatic insects
Cited by: 7
Author(s): Matthew R. Pintar, William J. Resetarits
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2014.00358

Demonstrating microbial co-occurrence pattern analyses within and between ecosystems
Cited by: 239
Author(s): Ryan J. Williams, Adina Howe, Kirsten Hofmockel
Software Mentions: 6
Published: about 12 years ago

10.1098/rstb.2019.0242

Phylogenetic conservation of soil bacterial responses to simulated global changes
Cited by: 41
Author(s): Kazuo Isobe, Nicholas J. Bouskill, Eoin L. Brodie, Erika A. Sudderth, Jennifer B. H. Martiny
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2021.666558

The Transcriptional Response of Soil Bacteria to Long-Term Warming and Short-Term Seasonal Fluctuations in a Terrestrial Forest
Cited by: 6
Author(s): Priyanka Chowdhury, Stefan Golas, Lauren Alteio, Joshua T. E. Stevens, Andrew F. Billings, Jeffrey L. Blanchard, Jerry M. Melillo, Kristen M. DeAngelis
Software Mentions: 6
Published: about 5 years ago

10.1186/s40168-021-01150-6

Gammaproteobacteria, a core taxon in the guts of soil fauna, are potential responders to environmental concentrations of soil pollutants
Cited by: 40
Author(s): Qi Zhang, Zhenyan Zhang, Tao Lu, Yitian Yu, Josep Peñuelas, Yan Zhu, Haifeng Qian
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0233872

Alpha-, beta-, and gamma-diversity of bacteria varies across habitats
Cited by: 83
Author(s): Kendra E. Walters, Jennifer B. H. Martiny
Software Mentions: 6
Published: almost 6 years ago

10.1098/rspb.2019.0804

Anthropogenic remediation of heavy metals selects against natural microbial remediation
Cited by: 11
Author(s): Elze Hesse, Daniel Padfield, Florian Bayer, Eleanor M. van Veen, Christopher G. Bryan, Angus Buckling
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-021-81150-6

Welwitschia: Phylogeography of a living fossil, diversified within a desert refuge
Cited by: 10
Author(s): Norbert Jürgens, Imke Oncken, Jens Oldeland, Felicitas Gunter, Barbara Rudolph
Software Mentions: 6
Published: over 5 years ago

10.3390/nu13092983

Supplementation of 1-Kestose Modulates the Gut Microbiota Composition to Ameliorate Glucose Metabolism in Obesity-Prone Hosts
Cited by: 10
Author(s): Ayako Watanabe, Takumi Tochio, Yasuhiro Kadota, Motoki Takahashi, Yasuyuki Kitaura, H. Ishikawa, Takanori Yasutake, Masahiro Nakano, Hiroe Shinohara, Toru Kudo, Yuichiro Nishimoto, Yoshinori Mizuguchi, Akihito Endo, Yoshiharu Shimomura
Software Mentions: 6
Published: about 5 years ago

10.1186/s40104-021-00580-4

Convergence of the turkey gut microbiota following cohabitation under commercial settings
Cited by: 1
Author(s): Elizabeth A. Miller, Brittanie Winfield, Bonnie Weber, Cristian Flores-Figueroa, Jeannette Muñoz-Aguayo, Jared Huisinga, Timothy J. Johnson
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms9030492

The Lung Microbiome in Young Children with Cystic Fibrosis: A Prospective Cohort Study
Cited by: 11
Author(s): Barry Linnane, Aaron M. Walsh, Calum J. Walsh, Fiona Crispie, Órla O’Sullivan, Paul D. Cotter, Michael McDermott, J. A. A. Renwick, Paul McNally
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms9010127

Gut Microbiota and Short-Chain Fatty Acid Profile between Normal and Moderate Malnutrition Children in Yogyakarta, Indonesia
Cited by: 15
Author(s): Rafli Zulfa Kamil, Agnes Murdiati, Mohammad Juffrie, Jiro Nakayama, Endang Sutriswati Rahayu
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0224432

Effectiveness of novel fabrics to resist punctures and lacerations from white shark (Carcharodon carcharias): Implications to reduce injuries from shark bites
Cited by: 8
Author(s): Sasha K. Whitmarsh, Dhara B. Amin, John J. Costi, Joshua D. Dennis, Charlie Huveneers
Software Mentions: 6
Published: almost 7 years ago

10.3390/microorganisms7020037

Fungal Endophyte Communities of Three Agricultural Important Grass Species Differ in Their Response Towards Management Regimes
Cited by: 12
Author(s): Bernd Wemheuer, Torsten Thomas, Franziska Wemheuer
Software Mentions: 6
Published: over 7 years ago

10.3389/fcimb.2021.643968

Gut Microbiome Alterations in Patients With Thyroid Nodules
Cited by: 15
Author(s): Ang Li, Tiantian Li, Xinxin Gao, Hang Yan, Jingfeng Chen, Mingjie Huang, Lin Wang, Dengke Yin, Hongqiang Li, Runsheng Ma, Qiang Zeng, Shuzhe Ding
Software Mentions: 6
Published: over 5 years ago

10.1186/s40168-017-0389-9

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming
Cited by: 340
Author(s): Kyle Hartman, Marcel G. A. van der Heijden, Raphaël Wittwer, Samiran Banerjee, Jean Claude Walser, Klaus Schlaeppi
Software Mentions: 6
Published: over 8 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292