cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1186/s40168-019-0736-0

Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat
Cited by: 39
Author(s): Lydie Kerdraon, Matthieu Barret, Valérie Laval, Frédéric Suffert
Software Mentions: 7
Published: about 7 years ago

10.1038/s41598-017-15220-z

Captive bottlenose dolphins and killer whales harbor a species-specific skin microbiota that varies among individuals
Cited by: 28
Author(s): Marlène Chiarello, Sébastien Villéger, Corinne Bouvier, Jean‐Christophe Auguet, Thierry Bouvier
Software Mentions: 7
Published: almost 9 years ago

10.1038/s41598-019-54532-0

Variations in terrestrial arthropod DNA metabarcoding methods recovers robust beta diversity but variable richness and site indicators
Cited by: 19
Author(s): Teresita M. Porter, Dave M. Morris, Nathan Basiliko, Mehrdad Hajibabaei, Daniel Doucet, Susan Bowman, Erik J. S. Emilson, Caroline E. Emilson, Derek Chartrand, Kerrie L. Wainio-Keizer, Armand Séguin, Lisa Venier
Software Mentions: 7
Published: almost 7 years ago

10.1038/s41598-021-93918-x

Probiotic supplementation reduces inflammatory profiles but does not prevent oral immune perturbations during SIV infection
Cited by: 4
Author(s): Rhianna Jones, Kyle Kroll, Courtney Broedlow, Luca Schifanella, Scott Smith, Brady Hueber, Spandan V. Shah, Daniel R. Ram, Cordelia Manickam, Valerie Varner, Nichole R. Klatt, R. Keith Reeves
Software Mentions: 7
Published: about 5 years ago

10.1111/ele.12878

Ecological selection of siderophore‐producing microbial taxa in response to heavy metal contamination
Cited by: 90
Author(s): Elze Hesse, Siobhán O’Brien, Nicolas Tromas, Florian Bayer, Adela M. Luján, Eleanor M. van Veen, Dave Hodgson, Angus Buckling
Software Mentions: 7
Published: almost 9 years ago

10.1128/AEM.00646-21

Spatial and Temporal Dynamics of Prokaryotic and Viral Community Assemblages in a Lotic System (Manatee Springs, Florida)
Cited by: 8
Author(s): Kema Malki, Natalie A. Sawaya, Michael J. Tisza, Felipe H. Coutinho, Karyna Rosario, Anna J. Székely, Mya Breitbart
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-017-18435-2

Ecological plasticity in the gastrointestinal microbiomes of Ethiopian Chlorocebus monkeys
Cited by: 32
Author(s): Pål Trosvik, Eli Knispel Rueness, Eric J. de Muinck, Amera Moges, Addisu Mekonnen
Software Mentions: 7
Published: over 8 years ago

10.1038/s41598-017-13601-y

Gut microbiome alterations in Alzheimer’s disease
Cited by: 1,108
Author(s): N. Vogt, Robert L. Kerby, Kimberly A. Dill‐McFarland, Sandra Harding, Andrew P. Merluzzi, Sterling C. Johnson, Cynthia M. Carlsson, Sanjay Asthana, Henrik Zetterberg, Kaj Blennow, Barbara B. Bendlin, Federico E. Rey
Software Mentions: 7
Published: almost 9 years ago

10.1111/eva.12531

Egg size and the adaptive capacity of early life history traits in Chinook salmon (<i>Oncorhynchus tshawytscha</i> )
Cited by: 21
Author(s): Michael W. Thorn, Yolanda E. Morbey
Software Mentions: 7
Published: about 9 years ago

10.1186/s12866-020-01907-3

The gut mycobiota of rural and urban individuals is shaped by geography
Cited by: 23
Author(s): Mubanga Hellen Kabwe, Surendra Vikram, Khodani Mulaudzi, Janet K. Jansson, Thulani P. Makhalanyane
Software Mentions: 7
Published: about 6 years ago

10.1098/rsos.170073

Predictors and immunological correlates of sublethal mercury exposure in vampire bats
Cited by: 44
Author(s): Daniel J. Becker, Matthew M. Chumchal, Alexandra B. Bentz, Steven G. Platt, Gábor Á. Czirják, Thomas R. Rainwater, Sonia Altizer, Daniel G. Streicker
Software Mentions: 7
Published: over 9 years ago

10.1002/ece3.5025

Spatiotemporal variability in the structure of seagrass meadows and associated macrofaunal assemblages in southwest England (UK): Using citizen science to benchmark ecological pattern
Cited by: 7
Author(s): Dan A. Smale, Graham Epstein, Mark Parry, Martin J. Attrill
Software Mentions: 7
Published: over 7 years ago

10.1002/ece3.5188

Invasive species removal increases species and phylogenetic diversity of wetland plant communities
Cited by: 12
Author(s): Shane C. Lishawa, Beth A. Lawrence, Dennis A. Albert, Daniel J. Larkin, Nancy C. Tuchman
Software Mentions: 7
Published: over 7 years ago

10.7717/peerj.6687

A longitudinal study of the faecal microbiome and metabolome of periparturient mares
Cited by: 11
Author(s): Shebl E. Salem, Rachael Hough, Chris Probert, Thomas W. Maddox, Philipp Antczak, Julian M. Ketley, Nicola Williams, Sarah J. Stoneham, Debra Archer
Software Mentions: 7
Published: over 7 years ago

10.1186/s42523-021-00130-3

Differential effects of elevated nest temperature and parasitism on the gut microbiota of wild avian hosts
Cited by: 5
Author(s): Melissa R. Ingala, Lauren Albert, Alyssa Addesso, Mackenzie J. Watkins, Sarah A. Knutie
Software Mentions: 7
Published: about 5 years ago

10.3389/fpls.2020.602645

Bradyrhizobium as the Only Rhizobial Inhabitant of Mung Bean (Vigna radiata) Nodules in Tropical Soils: A Strategy Based on Microbiome for Improving Biological Nitrogen Fixation Using Bio-Products
Cited by: 11
Author(s): Vinício Oliosi Favero, Rita Hilário de Carvalho, Victória Monteiro da Motta, Ana Beatriz Carneiro Leite, Márcia Reed Rodrigues Coelho, Gustavo Ribeiro Xavier, Norma Gouvêa Rumjanek, Segundo Urquiaga
Software Mentions: 7
Published: over 5 years ago

10.1186/s42523-021-00117-0

Gut microbiome is affected by gut region but robust to host physiological changes in captive active-season ground squirrels
Cited by: 3
Author(s): Kirsten Grond, Courtney C. Kurtz, Jasmine J. Hatton, Michelle M. Sonsalla, Khrystyne N. Duddleston
Software Mentions: 7
Published: about 5 years ago

10.7717/peerj.9493

Microbial and chemical dynamics of a toxic dinoflagellate bloom
Cited by: 9
Author(s): Nastassia V. Patin, Emily R. Brown, Gabriella Chebli, Claire Garfield, Julia Kubanek, Frank J. Stewart
Software Mentions: 7
Published: about 6 years ago

10.3389/fpls.2020.542153

Heritable Variation in Pea for Resistance Against a Root Rot Complex and Its Characterization by Amplicon Sequencing
Cited by: 9
Author(s): Lukas Wille, Monika Messmer, Natacha Bodenhausen, Bruno Studer, Pierre Hohmann
Software Mentions: 7
Published: almost 6 years ago

10.1186/s40793-020-0353-3

Unravelling the effects of tropical land use conversion on the soil microbiome
Cited by: 35
Author(s): Dirk Hölscher, Dominik Schneider, Anja Meryandini, Rolf Daniel
Software Mentions: 7
Published: over 6 years ago

10.3389/fpls.2019.00895

Aphids Influence Soil Fungal Communities in Conventional Agricultural Systems
Cited by: 14
Author(s): Thomas David Joseph Wilkinson, Jean‐Pascal Miranda, Julia Ferrari, Susan Hartley, Angela Hodge
Software Mentions: 7
Published: about 7 years ago

10.3389/fpls.2019.01405

Fungicides and the Grapevine Wood Mycobiome: A Case Study on Tracheomycotic Ascomycete Phaeomoniella chlamydospora Reveals Potential for Two Novel Control Strategies
Cited by: 16
Author(s): Giovanni Del Frari, Alex Gobbi, Marie Rønne Aggerbeck, Helena Oliveira, Lars Hestbjerg Hansen, Ricardo B. Ferreira
Software Mentions: 7
Published: almost 7 years ago

10.1007/s00253-021-11475-9

Do initial concentration and activated sludge seasonality affect pharmaceutical biotransformation rate constants?
Cited by: 10
Author(s): Tamara J. H. M. van Bergen, Ana B. Rios‐Miguel, Tom M. Nolte, A.M.J. Ragas, Rosalie van Zelm, Martien H.F. Graumans, Paul T.J. Scheepers, Mike S. M. Jetten, A. Jan Hendriks, Cornelia U. Welte
Software Mentions: 7
Published: about 5 years ago

10.1186/s40168-021-01012-1

Much ado about nothing? Off-target amplification can lead to false-positive bacterial brain microbiome detection in healthy and Parkinson’s disease individuals
Cited by: 25
Author(s): Janis R. Bedarf, Naiara Beraza, Hassan Khazneh, Ezgi Özkurt, David Baker, Valeri Borger, Ullrich Wüllner, Falk Hildebrand
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-020-60575-5

Dung beetles response to livestock management in three different regional contexts
Cited by: 8
Author(s): Celeste Beatriz Guerra Alonso, Gustavo A. Zurita, M. Isabel Bellocq
Software Mentions: 7
Published: over 6 years ago

10.3390/microorganisms5040068

Linking Compositional and Functional Predictions to Decipher the Biogeochemical Significance in DFAA Turnover of Abundant Bacterioplankton Lineages in the North Sea
Cited by: 16
Author(s): Bernd Wemheuer, Franziska Wemheuer, Dimitri V. Meier, Sara Billerbeck, Helge-Ansgar Giebel, Meinhard Simon, Christoph Scherber, Rolf Daniel
Software Mentions: 7
Published: almost 9 years ago

10.1371/journal.pone.0245626

Diversity of microbial communities and soil nutrients in sugarcane rhizosphere soil under water soluble fertilizer
Cited by: 20
Author(s): Huan Niu, Ziqin Pang, Nyumah Fallah, Yongmei Zhou, Caifang Zhang, Chaohua Hu, Wenxiong Lin, Zhaonian Yuan
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-021-96967-4

Parasites and diet as main drivers of the Malagasy gut microbiome richness and function
Cited by: 3
Author(s): Stanislas Mondot, Philippe Poirier, Ahmed Abou-Bacar, Valentin Greigert, Julie Brunet, Céline Nourrisson, Milijaona Randrianarivelojosia, Jean-Louis Razafindrakoto, Eugène Morel, Rivo Rakotomalala, Marion Leclerc, Karine Le Roux, Céline Monot, Patricia Lepage, Ermanno Candolfi
Software Mentions: 7
Published: about 5 years ago

10.3390/microorganisms8050677

The Bacterial Gut Microbiota of Adult Patients Infected, Colonized or Noncolonized by Clostridioides difficile
Cited by: 21
Author(s): Monique J. T. Crobach, Quinten R Ducarmon, Elisabeth M. Terveer, Céline Harmanus, Ingrid M J G Sanders, Kees Verduin, Ed J. Kuijper, Romy D. Zwittink
Software Mentions: 7
Published: over 6 years ago

10.1186/s12864-018-5419-x

Dose-dependent impact of oxytetracycline on the veal calf microbiome and resistome
Cited by: 16
Author(s): Bart J. F. Keijser, Valeria Agamennone, Tim J. van den Broek, Martien P. M. Caspers, Adri van de Braak, Richard Bomers, Mieke Havekes, Eric D. Schoen, Martin van Baak, Daniël Mioch, Lonneke Bomers, R.C. Montijn
Software Mentions: 7
Published: over 7 years ago

10.3389/fmicb.2019.02621

Influence of Various Processing Parameters on the Microbial Community Dynamics, Metabolomic Profiles, and Cup Quality During Wet Coffee Processing
Cited by: 31
Author(s): Sophia Jiyuan Zhang, Florac De Bruyn, Vasileios Pothakos, Gonzalo F Contreras, Z. Y. Cai, Cyril Moccand, Stefan Weckx, Luc De Vuyst
Software Mentions: 7
Published: almost 7 years ago

10.3390/ani10020242

Applicability of an Unmedicated Feeding Program Aimed to Reduce the Use of Antimicrobials in Nursery Piglets: Impact on Performance and Fecal Microbiota
Cited by: 2
Author(s): Paola López-Colom, Jordi Estellé, Jordi Bonet, Julià Coma, S. M. Martín‐Orúe
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-021-98926-5

Quantitative assessment of multiple fish species around artificial reefs combining environmental DNA metabarcoding and acoustic survey
Cited by: 22
Author(s): Masaaki Sato, Nariaki Inoue, Ryogen Nambu, Naoki Furuichi, Tsutomu Imaizumi, Masayuki Ushio
Software Mentions: 7
Published: about 5 years ago

10.3390/life10090185

An Overview of Bioinformatics Tools for DNA Meta-Barcoding Analysis of Microbial Communities of Bioaerosols: Digest for Microbiologists
Cited by: 3
Author(s): Hamza Mbareche, Nathan Dumont-Leblond, Guillaume J. Bilodeau, Caroline Duchaine
Software Mentions: 7
Published: about 6 years ago

10.3390/ani11051442

Agricultural Holdings and Slaughterhouses’ Impact on Patterns of Pathological Findings Observed during Post-Mortem Meat Inspection
Cited by: 5
Author(s): Johannes Klinger, Beate Conrady, Marina Mikula, Annemarie Käsbohrer
Software Mentions: 7
Published: over 5 years ago

10.1186/s40168-019-0677-7

Maize synthesized benzoxazinoids affect the host associated microbiome
Cited by: 160
Author(s): Enoch Narh Kudjordjie, Rumakanta Sapkota, Stine K. Steffensen, Inge S. Fomsgaard, Mogens Nicolaisen
Software Mentions: 7
Published: over 7 years ago

10.1111/mec.15724

Leech blood‐meal invertebrate‐derived DNA reveals differences in Bornean mammal diversity across habitats
Cited by: 19
Author(s): Rosie Drinkwater, Tommaso Jucker, Joshua H.T. Potter, Tom Swinfield, David A. Coomes, Eleanor M. Slade, M. Thomas P. Gilbert, Owen T. Lewis, Henry Bernard, Matthew J. Struebig, Elizabeth L. Clare, Stephen J. Rossiter
Software Mentions: 7
Published: almost 6 years ago

10.3389/fmicb.2021.719486

Compositional Shift of Bacterial, Archaeal, and Fungal Communities Is Dependent on Trophic Lifestyles in Rice Paddy Soil
Cited by: 5
Author(s): Hyun Kim, Jongbum Jeon, Kiseok Keith Lee, Yong-Hwan Lee
Software Mentions: 7
Published: about 5 years ago

10.1111/mec.14931

The evolution of abdominal microbiomes in fungus‐growing ants
Cited by: 23
Author(s): Panagiotis Sapountzis, David R. Nash, Morten Schiøtt, Jacobus J. Boomsma
Software Mentions: 7
Published: almost 8 years ago

10.1371/journal.pone.0218636

Characterizing the postmortem human bone microbiome from surface-decomposed remains
Cited by: 23
Author(s): Alexandra L. Emmons, Amy Z. Mundorff, Sarah W. Keenan, Jonathan Davoren, Janna M. Andronowski, David Carter, Jennifer M. DeBruyn
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0155826

Elevational Distribution of Flightless Ground Beetles in the Tropical Rainforests of North-Eastern Australia
Cited by: 10
Author(s): Kyran M. Staunton, Akihiro Nakamura, Chris J. Burwell, Simon K. A. Robson, Stephen E. Williams
Software Mentions: 7
Published: over 10 years ago

10.1186/s40168-017-0374-3

Dietary energy drives the dynamic response of bovine rumen viral communities
Cited by: 63
Author(s): Christopher L. Anderson, Matthew B. Sullivan, Samodha C. Fernando
Software Mentions: 7
Published: almost 9 years ago

10.3389/fmicb.2021.607289

The Relationship Between Microbiomes and Selective Regimes in the Sponge Genus Ircinia
Cited by: 5
Author(s): J. B. Kelly, David E. Carlson, Jun Siong Low, Tyler Rice, Robert Thacker
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0233943

Effects of parity, blood progesterone, and non-steroidal anti-inflammatory treatment on the dynamics of the uterine microbiota of healthy postpartum dairy cows
Cited by: 17
Author(s): Osvaldo Bogado Pascottini, J. F. W. Sprícigo, Sabrina J. Van Schyndel, B. Mion, Joyce D. Rousseau, J. Scott Weese, S.J. LeBlanc
Software Mentions: 7
Published: over 5 years ago

10.7189/jogh.11.04047

Topical emollient therapy with sunflower seed oil alters the skin microbiota of young children with severe acute malnutrition in Bangladesh: A randomised, controlled study
Cited by: 3
Author(s): Natalie Fischer, Gary L. Darmstadt, K. M. Shahunja, Jonathan Crowther, Lindsay Kendall, Rachel A. Gibson, Tahmeed Ahmed, David A. Relman
Software Mentions: 7
Published: about 5 years ago

10.3390/jof7040253

Molecular and Environmental Triggering Factors of Pathogenicity of Fusarium oxysporum and F. solani Isolates Involved in the Coffee Corky-Root Disease
Cited by: 3
Author(s): Roberto Gamboa-Becerra, Daniel López-Lima, Luc Villain, Jean‐Christophe Breitler, Gloria Carrión, Damaris Desgarennes
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2021.640253

In vitro Fermentation Reveals Changes in Butyrate Production Dependent on Resistant Starch Source and Microbiome Composition
Cited by: 22
Author(s): June Teichmann, Darrell Cockburn
Software Mentions: 7
Published: over 5 years ago

10.1128/mBio.00630-18

Leveraging Existing 16S rRNA Gene Surveys To Identify Reproducible Biomarkers in Individuals with Colorectal Tumors
Cited by: 34
Author(s): Marc A. Sze, Patrick D. Schloss
Software Mentions: 7
Published: over 8 years ago

10.1186/s40168-018-0595-0

Skin and gut microbiomes of a wild mammal respond to different environmental cues
Cited by: 38
Author(s): Anton Lavrinienko, Eugene Tukalenko, Tapio Mappes, Phillip C. Watts
Software Mentions: 7
Published: almost 8 years ago

10.1186/s12936-017-1738-7

Change in Anopheles richness and composition in response to artificial flooding during the creation of the Jirau hydroelectric dam in Porto Velho, Brazil
Cited by: 9
Author(s): Moreno S. Rodrigures, Elis P. A. Batista, Alexandre de Almeida e Silva, Fábio Medeiros da Costa, Verissimo A. S. Neto, Luiz Herman Soares Gil
Software Mentions: 7
Published: over 9 years ago

10.1098/rsos.210035

Local versus site-level effects of algae on coral microbial communities
Cited by: 4
Author(s): Amy A. Briggs, A. L. Brown, Craig W. Osenberg
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-017-16353-x

The microbiomes of blowflies and houseflies as bacterial transmission reservoirs
Cited by: 85
Author(s): Ana Carolina M. Junqueira, Aakrosh Ratan, Enzo Acerbi, Daniela I. Drautz–Moses, Balakrishnan N. V. Premkrishnan, Paul Igor Costea, Bodo Linz, Rikky W. Purbojati, Daniel F. Paulo, Nicolas E. Gaultier, Poorani Subramanian, Nur A. Hasan, Rita R. Colwell, Peer Bork, Ana Maria Lima de Azeredo-Espin, Donald A. Bryant, Stephan C. Schuster
Software Mentions: 7
Published: almost 9 years ago

10.3389/fmicb.2021.645784

Soil Microsite Outweighs Cultivar Genotype Contribution to Brassica Rhizobacterial Community Structure
Cited by: 1
Author(s): Scott Klasek, Marcus T. Brock, Hilary G. Morrison, Cynthia Weinig, Loïs Maignien
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pbio.2004108

Rapid environmental effects on gut nematode susceptibility in rewilded mice
Cited by: 94
Author(s): Jacqueline M. Leung, Sarah A. Budischak, Hao Chung The, Christina Hansen, Rowann Bowcutt, Rebecca Neill, Mitchell Shellman, P’ng Loke, Andrea L. Graham
Software Mentions: 7
Published: over 8 years ago

10.1038/s41398-021-01531-3

Gut microbial biomarkers for the treatment response in first-episode, drug-naïve schizophrenia: a 24-week follow-up study
Cited by: 22
Author(s): Xiuxia Yuan, Yunpeng Wang, Xue Li, Jiajun Jiang, Yulin Kang, Lijuan Pang, Peifen Zhang, Ang Li, Luxian Lv, Ole A. Andreassen, Xiaoduo Fan, Shaohua Hu, Xueqin Song
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2017.02222

Gut Microbial Dysbiosis Is Associated with Altered Hepatic Functions and Serum Metabolites in Chronic Hepatitis B Patients
Cited by: 126
Author(s): Jing Wang, Yang Wang, Xu Zhang, Jiaqi Liu, Qianpeng Zhang, Yu Zhao, Jinghua Peng, Qin Feng, Jianye Dai, Shujun Sun, Yuwu Zhao, Liping Zhao, Yongyu Zhang, Yiyang Hu, Menghui Zhang
Software Mentions: 6
Published: almost 9 years ago

10.3390/microorganisms9010127

Gut Microbiota and Short-Chain Fatty Acid Profile between Normal and Moderate Malnutrition Children in Yogyakarta, Indonesia
Cited by: 15
Author(s): Rafli Zulfa Kamil, Agnes Murdiati, Mohammad Juffrie, Jiro Nakayama, Endang Sutriswati Rahayu
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms7020037

Fungal Endophyte Communities of Three Agricultural Important Grass Species Differ in Their Response Towards Management Regimes
Cited by: 12
Author(s): Bernd Wemheuer, Torsten Thomas, Franziska Wemheuer
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-021-98724-z

Novel attempt at discrimination of a bullet-shaped siphonophore (Family Diphyidae) using matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-ToF MS)
Cited by: 1
Author(s): Nayeon Park, Jisu Yeom, Raehyuk Jeong, Wonchoel Lee
Software Mentions: 6
Published: about 5 years ago

10.1186/s40168-020-00917-7

Spatial heterogeneity of bacterial colonization across different gut segments following inter-species microbiota transplantation
Cited by: 56
Author(s): Na Li, Bo Zuo, Shimeng Huang, Benhua Zeng, Dandan Han, Tiantian Li, Ting Liu, Zhenhua Wu, Hong Wei, Jiangchao Zhao, Junjun Wang
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12866-019-1540-5

Taxonomic features and comparisons of the gut microbiome from two edible fungus-farming termites (Macrotermes falciger; M. natalensis) harvested in the Vhembe district of Limpopo, South Africa
Cited by: 13
Author(s): Stephanie L. Schnorr, Courtney A. Hofman, Shandukani R. Netshifhefhe, Frances D. Duncan, Tanvi P. Honap, Julie J. Lesnik, Cecil M. Lewis
Software Mentions: 6
Published: about 7 years ago

10.1002/ece3.5361

Drivers and patterns of microbial community assembly in a Lyme disease vector
Cited by: 30
Author(s): Lisa I. Couper, Jessica Y. Kwan, Joyce Ma, Andrea Swei
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-021-99441-3

Potential impacts of polymetallic nodule removal on deep-sea meiofauna
Cited by: 8
Author(s): Ellen Pape, Tânia Campinas Bezerra, Hendrik Gheerardyn, Marius Buydens, Amanda Kieswetter, Ann Vanreusel
Software Mentions: 6
Published: almost 5 years ago

10.18632/aging.103168

Gut microbiota and metabolite alterations associated with reduced bone mineral density or bone metabolic indexes in postmenopausal osteoporosis
Cited by: 103
Author(s): Jianquan He, Shuaimei Xu, Bangzhou Zhang, Chuanxing Xiao, Zhangran Chen, Fuyou Si, Jifan Fu, Xiaobo Lin, Guohua Zheng, Guangchuang Yu, Jian Chen
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2021.717990

Resistance and Vulnerability of Honeybee (Apis mellifera) Gut Bacteria to Commonly Used Pesticides
Cited by: 15
Author(s): Ana Cuesta-Maté, Justinn Renelies‐Hamilton, Per Kryger, Annette Bruun Jensen, Veronica M. Sinotte, Michael Poulsen
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2020.574137

Persistence of Suspected Probiotic Organisms in Preterm Infant Gut Microbiota Weeks After Probiotic Supplementation in the NICU
Cited by: 17
Author(s): Efrah I. Yousuf, Marília Sá Carvalho, Sara Dizzell, Stephanie Kim, Elizabeth Gunn, Jennifer Twiss, Lucy Giglia, Connie Stuart, Eileen K. Hutton, Katherine M. Morrison, Jennifer C. Stearns
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0232065

Tropical fishes vanished after the operation of a nuclear power plant was suspended in the Sea of Japan
Cited by: 3
Author(s): Reiji Masuda
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-61684-x

Metabolic Profiling Reveals Biochemical Pathways Responsible for Eelgrass Response to Elevated CO2 and Temperature
Cited by: 6
Author(s): Carmen C. Zayas-Santiago, Albert Rivas‐Ubach, Lih Kuo, Nicholas D. Ward, Richard C. Zimmerman
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2018.00674

Nitrosospira sp. Govern Nitrous Oxide Emissions in a Tropical Soil Amended With Residues of Bioenergy Crop
Cited by: 38
Author(s): Késia Silva Lourenço, Noriko A. Cassman, Agata Pijl, Johannes A. van Veen, Heitor Cantarella, Eiko E. Kuramae
Software Mentions: 6
Published: over 8 years ago

10.3389/fmicb.2018.01401

Stoichiometric Shifts in Soil C:N:P Promote Bacterial Taxa Dominance, Maintain Biodiversity, and Deconstruct Community Assemblages
Cited by: 50
Author(s): Zachary T. Aanderud, Sabrina Saurey, Becky A. Ball, Diana H. Wall, John E. Barrett, Mario E. Muscarella, Natasha A. Griffin, Ross A. Virginia, Albert Barberán, Byron J. Adams
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-021-92405-7

Microplastics accumulate fungal pathogens in terrestrial ecosystems
Cited by: 73
Author(s): Gerasimos Gkoutselis, Stephan Rohrbach, Janno Harjes, Martin Obst, Andreas Brachmann, Marcus A. Horn, Gerhard Rambold
Software Mentions: 6
Published: about 5 years ago

10.1186/s40168-021-01136-4

Longitudinal study on the effects of growth-promoting and therapeutic antibiotics on the dynamics of chicken cloacal and litter microbiomes and resistomes
Cited by: 24
Author(s): Chhedi Lal Gupta, Shlomo E. Blum, Karuppasamy Kattusamy, Tali Daniel, S. Druyan, Roni Shapira, O. Krifucks, Yan Zhu, Xinyuan Zhou, Jian‐Qiang Su, Eddie Cytryn
Software Mentions: 6
Published: about 5 years ago

10.3390/microorganisms8040509

Contrasting Patterns of the Bacterial Communities in Melting Ponds and Periglacial Rivers of the Zhuxi glacier in the Tibet Plateau
Cited by: 2
Author(s): Yang Hu, Xin Yao, Yuanyuan Wu, Wei Han, Yongqiang Zhou, Xiangming Tang, Kwang‐Tsao Shao, Guang Gao
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-019-54098-x

Obesity during pregnancy results in maternal intestinal inflammation, placental hypoxia, and alters fetal glucose metabolism at mid-gestation
Cited by: 48
Author(s): Jessica G. Wallace, Christian J. Bellissimo, Erica Yeo, Yu Xia, Jim Petrik, Michael G. Surette, Dawn M. E. Bowdish, Deborah M. Sloboda
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41598-018-27322-3

Costs of injury for scent signalling in a strepsirrhine primate
Cited by: 18
Author(s): Rachel L. Harris, Marylène Boulet, Kathleen E. Grogan, Christine M. Drea
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-018-23989-w

A large-scale survey of the postmortem human microbiome, and its potential to provide insight into the living health condition
Cited by: 90
Author(s): Jennifer L. Pechal, Carl J. Schmidt, Heather R. Jordan, M. Eric Benbow
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-018-20515-w

Exploring coral microbiome assemblages in the South China Sea
Cited by: 24
Author(s): Chunye Lin, Ren Mao Tian, Guowei Zhou, Haoya Tong, Yue Him Wong, Weipeng Zhang, Apple Pui Yi Chui, James Y. Xie, Jian‐Wen Qiu, Put O. Ang, Sheng Liu, Hui Huang, Pei‐Yuan Qian
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pbio.3000534

The effects of soil phosphorus content on plant microbiota are driven by the plant phosphate starvation response
Cited by: 112
Author(s): Omri M. Finkel, Isai Salas-González, Gabriel Castrillo, Stijn Spaepen, Theresa F. Law, Paulo José Pereira Lima Teixeira, Corbin D. Jones, Jeffery L. Dangl
Software Mentions: 6
Published: almost 7 years ago

10.1186/s42523-020-0022-2

Antibiotic resistance gene sharing networks and the effect of dietary nutritional content on the canine and feline gut resistome
Cited by: 15
Author(s): Younjung Kim, Marcus H. Y. Leung, Wendy Kwok, Guillaume Fournié, Jun Li, Patrick K. H. Lee, Dirk U. Pfeiffer
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-60929-z

Chronic disturbance modulates symbiont (Symbiodiniaceae) beta diversity on a coral reef
Cited by: 11
Author(s): Danielle C. Claar, Kristina L. Tietjen, Kieran Cox, Ruth D. Gates, Julia K. Baum
Software Mentions: 6
Published: over 6 years ago

10.1186/s40168-016-0218-6

The gut microbiota in conventional and serrated precursors of colorectal cancer
Cited by: 160
Author(s): Brandilyn A. Peters, Christine Dominianni, Jean A. Shapiro, Timothy R. Church, Jing Wu, George Miller, Elizabeth Yuen, Hal Freiman, Ian Lustbader, James Salik, Charles Friedlander, Richard B. Hayes, Jiyoung Ahn
Software Mentions: 6
Published: almost 10 years ago

10.1002/ece3.4283

A comparative analysis of metabarcoding and morphology‐based identification of benthic communities across different regional seas
Cited by: 47
Author(s): Abigail Cahill, John K. Pearman, Ángel Borja, Laura Carugati, Susana Carvalho, Roberto Danovaro, Sarah Dashfield, Romain David, Jean‐Pierre Féral, Sergej Olenin, Andrius Šiaulys, Paul J. Somerfield, Antoaneta Trayanova, María C. Uyarra, Anne Chenuil
Software Mentions: 6
Published: about 8 years ago

10.1186/s40168-016-0174-1

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure
Cited by: 163
Author(s): Isabelle Laforest‐Lapointe, Christian Messier, Steven W. Kembel
Software Mentions: 6
Published: over 10 years ago

10.1371/journal.pbio.2005747

Vitellogenin-like A–associated shifts in social cue responsiveness regulate behavioral task specialization in an ant
Cited by: 57
Author(s): Philip Kohlmeier, Barbara Feldmeyer, Susanne Foitzik
Software Mentions: 6
Published: over 8 years ago

10.1186/s42523-019-0008-0

Faecal inoculations alter the gastrointestinal microbiome and allow dietary expansion in a wild specialist herbivore, the koala
Cited by: 36
Author(s): Michaela D. J. Blyton, Rochelle M. Soo, Desley A. Whisson, Karen J. Marsh, Jack H. Pascoe, Mark Le, William J. Foley, Philip Hugenholtz, Ben D. Moore
Software Mentions: 6
Published: about 7 years ago

10.1186/s42523-020-00054-4

Microbial co-occurrence networks of gut microbiota reveal community conservation and diet-associated shifts in cichlid fishes
Cited by: 18
Author(s): Joan Lluís Riera, Laura Baldo
Software Mentions: 6
Published: about 6 years ago

10.1186/s12284-021-00522-8

Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata)
Cited by: 11
Author(s): Jian Xie, Xiaoqing Wang, Jiawang Xu, Haizhu Xie, Yaohui Cai, Yizheng Liu, Xia Ding
Software Mentions: 6
Published: about 5 years ago

10.1186/s12903-021-01832-5

The effects of removing dead bacteria by propidium monoazide on the profile of salivary microbiome
Cited by: 5
Author(s): Qidi Ren, Fangqiao Wei, Chao Yuan, Ce Zhu, Qian Zhang, Junkang Quan, Xiangyu Sun, Shuguo Zheng
Software Mentions: 6
Published: about 5 years ago

10.1186/s40168-015-0069-6

Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure
Cited by: 108
Author(s): Adrienne B. Narrowe, Munira Albuthi-Lantz, Erin P. Smith, Kimberly J Bower, Timberley M. Roane, Alan M. Vajda, Christopher S. Miller
Software Mentions: 6
Published: over 11 years ago

10.1002/ece3.3597

Gut microbiota composition is associated with environmental landscape in honey bees
Cited by: 94
Author(s): Julia C. Jones, Carmelo Fruciano, Falk Hildebrand, Hasan Al Toufalilia, Nicholas J. Balfour, Peer Bork, Philipp Engel, Francis L. W. Ratnieks, William O. Hughes
Software Mentions: 6
Published: almost 9 years ago

10.1098/rspb.2021.0393

Quantitative assessment of tarsal morphology illuminates locomotor behaviour in Palaeocene mammals following the end-Cretaceous mass extinction
Cited by: 3
Author(s): Sarah L. Shelley, Stephen L. Brusatte, Thomas E. Williamson
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8121978

Not That Close to Mommy: Horizontal Transmission Seeds the Microbiome Associated with the Marine Sponge Plakina cyanorosea
Cited by: 8
Author(s): Bruno Francesco Rodrigues de Oliveira, Isabelle Rodrigues Lopes, Anna Luiza Bauer Canellas, Guilherme Muricy, Alan D. W. Dobson, Marinella Silva Laport
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12866-020-01913-5

Deciphering the archaeal communities in tree rhizosphere of the Qinghai-Tibetan plateau
Cited by: 11
Author(s): Mengjun Zhang, Liwei Chai, Muke Huang, Weiqian Jia, Jiabao Guo, Yi Huang
Software Mentions: 6
Published: about 6 years ago

10.1186/s40168-019-0734-2

Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics
Cited by: 94
Author(s): Chengying Shi, Leen Beller, Ward Deboutte, Kwe Claude Yinda, Leen Delang, Anubis Vega-Rúa, Anna‐Bella Failloux, Jelle Matthijnssens
Software Mentions: 6
Published: about 7 years ago

10.1186/s12866-021-02245-8

Microbiome recovery in adult females with uncomplicated urinary tract infections in a randomised phase 2A trial of the novel antibiotic gepotidacin (GSK2140944)
Cited by: 5
Author(s): Andrea Nuzzo, Stephanie Van Horn, Christopher Traini, Caroline M. Perry, Étienne Dumont, Nicole Scangarella-Oman, David F. Gardiner, James R. Brown
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms9020252

Relationships among Fecal, Air, Oral, and Tracheal Microbial Communities in Pigs in a Respiratory Infection Disease Model
Cited by: 7
Author(s): Robert Valeris-Chacín, Amanda Sponheim, Eduardo Fano, Richard E. Isaacson, Randall S. Singer, Joel Nerem, Fernando Leite, Maria Pieters
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.3674

Microbiome succession during ammonification in eelgrass bed sediments
Cited by: 21
Author(s): Cassandra L. Ettinger, Susan L. Williams, Jessica M. Abbott, John J. Stachowicz, Jonathan A. Eisen
Software Mentions: 6
Published: about 9 years ago

10.1186/s12866-020-01987-1

Long-term effects of mixed planting on arbuscular mycorrhizal fungal communities in the roots and soils of Juglans mandshurica plantations
Cited by: 7
Author(s): Ji Li, Zhang Yan, Yuchun Yang, Lü Yang, Na Yang, Depeng Zhang
Software Mentions: 6
Published: almost 6 years ago

10.1111/1462-2920.15260

The biogeochemical variability of Arctic thermokarst ponds is reflected by stochastic and niche‐driven microbial community assembly processes
Cited by: 11
Author(s): Alizée Le Moigne, Maciej Bartosiewicz, Gabriela Schaepman‐Strub, Samuel Abiven, Jakob Pernthaler
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-018-21219-x

Interactions between predation and disturbances shape prey communities
Cited by: 22
Author(s): Canan Karakoç, Viktoriia Radchuk, Hauke Harms, Antonis Chatzinotas
Software Mentions: 6
Published: over 8 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292