cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1002/ece3.5025

Spatiotemporal variability in the structure of seagrass meadows and associated macrofaunal assemblages in southwest England (UK): Using citizen science to benchmark ecological pattern
Cited by: 7
Author(s): Dan A. Smale, Graham Epstein, Mark Parry, Martin J. Attrill
Software Mentions: 7
Published: over 7 years ago

10.3390/insects12070647

Impact of Temperature on the Immune Interaction between a Parasitoid Wasp and Drosophila Host Species
Cited by: 3
Author(s): Fanny Cavigliasso, Jean‐Luc Gatti, Dominique Colinet, Marylène Poirié
Software Mentions: 7
Published: about 5 years ago

10.1186/s40168-021-01013-0

animalcules: interactive microbiome analytics and visualization in R
Cited by: 16
Author(s): Yue Zhao, Anthony Federico, Tyler Faits, Solaiappan Manimaran, Daniel Segrè, Stefano Monti, W. Evan Johnson
Software Mentions: 7
Published: over 5 years ago

10.1080/19490976.2021.1927634

Influence of pig farming on human Gut Microbiota: role of airborne microbial communities
Cited by: 5
Author(s): Julia Moor, Tsering Wüthrich, Suzanne Aebi, Nadezda Mostacci, Gudrun Overesch, Anne Oppliger, Markus Hilty
Software Mentions: 7
Published: over 5 years ago

10.7717/peerj.8056

Different nitrogen sources speed recovery from corallivory and uniquely alter the microbiome of a reef-building coral
Cited by: 18
Author(s): Mallory M. Rice, Rebecca L. Maher, Rebecca Vega Thurber, Deron E. Burkepile
Software Mentions: 7
Published: almost 7 years ago

10.3390/insects12050374

Buzzing Homes: Using Citizen Science Data to Explore the Effects of Urbanization on Indoor Mosquito Communities
Cited by: 7
Author(s): Nadja Pernat, Helge Kampen, Jonathan M. Jeschke, Doreen Werner
Software Mentions: 7
Published: over 5 years ago

10.1186/s40168-015-0116-3

Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities
Cited by: 151
Author(s): Aleksandra Checinska, Alexander J. Probst, Parag Vaishampayan, James R. White, Deepika Kumar, В. П. Степанов, George E. Fox, R. Henrik Nilsson, Duane L. Pierson, Jay L. Perry, Kasthuri Venkateswaran
Software Mentions: 7
Published: almost 11 years ago

10.1186/s40168-021-01044-7

Characterization of the public transit air microbiome and resistome reveals geographical specificity
Cited by: 20
Author(s): Marcus H. Y. Leung, Xinzhao Tong, Kari Oline Bøifot, Daniela Bezdan, Daniel Butler, David Danko, Jostein Gohli, D. C. Green, Mark Hernandez, Frank J. Kelly, Shawn Levy, Gabriella Mason-Buck, Marina Nieto-Caballero, Denise Syndercombe‐Court, Klas I. Udekwu, Brian P. Young, Christopher E. Mason, Marius Dybwad, P. K. H. Lee
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-018-29373-y

Experimentally induced metamorphosis in highly regenerative axolotl (ambystoma mexicanum) under constant diet restructures microbiota
Cited by: 25
Author(s): Turan Demircan, Guvanch Ovezmyradov, Berna Yıldırım, İlknur Keskin, Ayşe Elif İlhan, Ece Cana Fesçioğlu, Gürkan Öztürk, Süleyman Yıldırım
Software Mentions: 7
Published: about 8 years ago

10.1371/journal.pbio.2004108

Rapid environmental effects on gut nematode susceptibility in rewilded mice
Cited by: 94
Author(s): Jacqueline M. Leung, Sarah A. Budischak, Hao Chung The, Christina Hansen, Rowann Bowcutt, Rebecca Neill, Mitchell Shellman, P’ng Loke, Andrea L. Graham
Software Mentions: 7
Published: over 8 years ago

10.3390/insects11060373

Susceptibility of Red Mason Bee Larvae to Bacterial Threats Due to Microbiome Exchange with Imported Pollen Provisions
Cited by: 22
Author(s): Anna Voulgari‐Kokota, Ingolf Steffan‐Dewenter, Alexander Keller
Software Mentions: 7
Published: about 6 years ago

10.1038/s41598-018-21197-0

Effects of timber harvesting on the genetic potential for carbon and nitrogen cycling in five North American forest ecozones
Cited by: 14
Author(s): Erick Cardenas, Luis H. Orellana, Konstantinos T. Konstantinidis, William W. Mohn
Software Mentions: 7
Published: over 8 years ago

10.1038/s41598-017-13601-y

Gut microbiome alterations in Alzheimer’s disease
Cited by: 1,108
Author(s): N. Vogt, Robert L. Kerby, Kimberly A. Dill‐McFarland, Sandra Harding, Andrew P. Merluzzi, Sterling C. Johnson, Cynthia M. Carlsson, Sanjay Asthana, Henrik Zetterberg, Kaj Blennow, Barbara B. Bendlin, Federico E. Rey
Software Mentions: 7
Published: almost 9 years ago

10.3389/fmicb.2021.640253

In vitro Fermentation Reveals Changes in Butyrate Production Dependent on Resistant Starch Source and Microbiome Composition
Cited by: 22
Author(s): June Teichmann, Darrell Cockburn
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-017-18435-2

Ecological plasticity in the gastrointestinal microbiomes of Ethiopian Chlorocebus monkeys
Cited by: 32
Author(s): Pål Trosvik, Eli Knispel Rueness, Eric J. de Muinck, Amera Moges, Addisu Mekonnen
Software Mentions: 7
Published: over 8 years ago

10.1038/s41598-017-16353-x

The microbiomes of blowflies and houseflies as bacterial transmission reservoirs
Cited by: 85
Author(s): Ana Carolina M. Junqueira, Aakrosh Ratan, Enzo Acerbi, Daniela I. Drautz–Moses, Balakrishnan N. V. Premkrishnan, Paul Igor Costea, Bodo Linz, Rikky W. Purbojati, Daniel F. Paulo, Nicolas E. Gaultier, Poorani Subramanian, Nur A. Hasan, Rita R. Colwell, Peer Bork, Ana Maria Lima de Azeredo-Espin, Donald A. Bryant, Stephan C. Schuster
Software Mentions: 7
Published: over 8 years ago

10.3390/pathogens10010066

Contamination Sources and Transmission Routes for Campylobacter on (Mixed) Broiler Farms in Belgium, and Comparison of the Gut Microbiota of Flocks Colonized and Uncolonized with Campylobacter
Cited by: 8
Author(s): Karolien Hertogs, Annelies Haegeman, Dries Schaumont, Philippe Gelaude, Lieven De Zutter, Jeroen Dewulf, Marc Heyndrickx, Geertrui Rasschaert
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-021-92513-4

High-throughput 16S rRNA gene sequencing of the microbial community associated with palm oil mill effluents of two oil processing systems
Cited by: 2
Author(s): Benedicte Ella Zranseu Aka, Theodore N. Djéni, Simon Laurent Tiemele Amoikon, Jan Kannengießer, Naaila Ouazzani, Marcellin Koffi Djè
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0155826

Elevational Distribution of Flightless Ground Beetles in the Tropical Rainforests of North-Eastern Australia
Cited by: 10
Author(s): Kyran M. Staunton, Akihiro Nakamura, Chris J. Burwell, Simon K. A. Robson, Stephen E. Williams
Software Mentions: 7
Published: over 10 years ago

10.1186/s40104-021-00601-2

Supplementation of a lacto-fermented rapeseed-seaweed blend promotes gut microbial- and gut immune-modulation in weaner piglets
Cited by: 13
Author(s): Yan Hui, Paulina Tamez-Hidalgo, Tomasz Cieplak, Gizaw Dabessa Satessa, Witold Kot, Søren Kjærulff, Mette Olaf Nielsen, Dennis Sandris Nielsen, Łukasz Krych
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-021-81668-9

Metagenomic analysis of the cow, sheep, reindeer and red deer rumen
Cited by: 23
Author(s): Laura Glendinning, Buğra Genç, R. J. Wallace, Mick Watson
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0200729

The murine female intestinal microbiota does not shift throughout the estrous cycle
Cited by: 18
Author(s): Jessica G. Wallace, Ryan Potts, Jake C. Szamosi, Michael G. Surette, Deborah M. Sloboda
Software Mentions: 7
Published: about 8 years ago

10.1128/mSystems.01381-20

Biogeography, Assembly Patterns, Driving Factors, and Interactions of Archaeal Community in Mangrove Sediments
Cited by: 24
Author(s): Zhifeng Zhang, Jie Pan, Yue-Ping Pan, Meng Li
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-021-84759-9

Swine growth promotion with antibiotics or alternatives can increase antibiotic resistance gene mobility potential
Cited by: 28
Author(s): Johanna Muurinen, Jacob A Richert, Carmen L. Wickware, B. T. Richert, Timothy A. Johnson
Software Mentions: 7
Published: over 5 years ago

10.1186/s12936-017-1738-7

Change in Anopheles richness and composition in response to artificial flooding during the creation of the Jirau hydroelectric dam in Porto Velho, Brazil
Cited by: 9
Author(s): Moreno S. Rodrigures, Elis P. A. Batista, Alexandre de Almeida e Silva, Fábio Medeiros da Costa, Verissimo A. S. Neto, Luiz Herman Soares Gil
Software Mentions: 7
Published: over 9 years ago

10.3389/fmicb.2019.02330

Metagenomics Reveals Bacterial and Archaeal Adaptation to Urban Land-Use: N Catabolism, Methanogenesis, and Nutrient Acquisition
Cited by: 12
Author(s): Dietrich Epp Schmidt, D. Johan Kotze, Elisabeth Hornung, Heikki Setälä, Ian D. Yesilonis, Katalin Szlávecz, Miklós Dombos, Richard V. Pouyat, Sarel S. Cilliers, Zsolt Tóth, Stephanie A. Yarwood
Software Mentions: 7
Published: almost 7 years ago

10.1128/mSystems.00811-21

Separation of Donor and Recipient Microbial Diversity Allows Determination of Taxonomic and Functional Features of Gut Microbiota Restructuring following Fecal Transplantation
Cited by: 4
Author(s): Evgenii I. Olekhnovich, A. B. Ivanov, Vladimir Ulyantsev, Elena Ilina
Software Mentions: 7
Published: almost 5 years ago

10.3390/microorganisms9030557

The Composition and Diversity of the Gut Microbiota in Children Is Modifiable by the Household Dogs: Impact of a Canine-Specific Probiotic
Cited by: 10
Author(s): Carlos Gómez-Gallego, Mira Forsgren, Marta Selma‐Royo, Merja Nermes, María Carmen Collado, Seppo Salminen, Shea Beasley, Erika Isolauri
Software Mentions: 7
Published: over 5 years ago

10.1038/s41396-018-0176-z

Long-term in situ permafrost thaw effects on bacterial communities and potential aerobic respiration
Cited by: 64
Author(s): Sylvain Monteux, James T. Weedon, Gesche Blume‐Werry, Konstantin Gavazov, Vincent E. J. Jassey, Margareta Johansson, Frida Keuper, Carolina Olid, Ellen Dorrepaal
Software Mentions: 7
Published: about 8 years ago

10.3389/fmicb.2017.02624

Characterization of the Skin Microbiota of the Cane Toad Rhinella cf. marina in Puerto Rico and Costa Rica
Cited by: 15
Author(s): Juan G. Abarca, Ibrahim Zuñiga, Gilmary Ortiz-Morales, Armando Lugo, Mariel Viquez-Cervilla, Natalia Rodríguez-Hernández, Frances Vázquez-Sánchez, Catalina Murillo‐Cruz, Ernesto A. Torres-Rivera, Adrián A. Pinto‐Tomás, Filipa Godoy-Vitorino
Software Mentions: 7
Published: over 8 years ago

10.1186/s40168-017-0280-8

Human presence impacts fungal diversity of inflated lunar/Mars analog habitat
Cited by: 23
Author(s): Adriana Blachowicz, Teresa Mayer, Mina Bashir, Thomas R. Pieber, Pablo de León, Kasthuri Venkateswaran
Software Mentions: 7
Published: about 9 years ago

10.3389/fmicb.2020.00669

Patterns in Microbial Assemblages Exported From the Meltwater of Arctic and Sub-Arctic Glaciers
Cited by: 20
Author(s): Tyler J. Kohler, Petra Vinšová, Lukáš Falteisek, Jakub D. Žárský, Jacob C. Yde, Jade E. Hatton, Jon R. Hawkings, Guillaume Lamarche-Gagnon, Eran Hood, Karen A. Cameron, Marek Stibal
Software Mentions: 7
Published: over 6 years ago

10.1002/ece3.7332

Bottom‐up effects of fungicides on tadpoles of the European common frog ( <i>Rana temporaria</i> )
Cited by: 1
Author(s): Mirco Bundschuh, Jochen P. Zubrod, Theo Wernicke, Marco Konschak, Leon Werner, Carsten A. Brühl, Patrick Baudy, Ralf Schulz
Software Mentions: 7
Published: over 5 years ago

10.1186/s13071-017-2140-6

Landscape structure affects distribution of potential disease vectors (Diptera: Culicidae)
Cited by: 41
Author(s): Carina Zittra, Simon Vitecek, Adelheid G. Obwaller, Heidemarie Rossiter, Barbara Eigner, Thomas Zechmeister, Johann Waringer, Hans‐Peter Fuehrer
Software Mentions: 7
Published: over 9 years ago

10.1371/journal.pone.0245626

Diversity of microbial communities and soil nutrients in sugarcane rhizosphere soil under water soluble fertilizer
Cited by: 20
Author(s): Huan Niu, Ziqin Pang, Nyumah Fallah, Yongmei Zhou, Caifang Zhang, Chaohua Hu, Wenxiong Lin, Zhaonian Yuan
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.5476

Plant‐driven changes in soil microbial communities influence seed germination through negative feedbacks
Cited by: 20
Author(s): E. C. Miller, Gabriel G. Perron, Cathy D. Collins
Software Mentions: 7
Published: about 7 years ago

10.3390/life10090185

An Overview of Bioinformatics Tools for DNA Meta-Barcoding Analysis of Microbial Communities of Bioaerosols: Digest for Microbiologists
Cited by: 3
Author(s): Hamza Mbareche, Nathan Dumont-Leblond, Guillaume J. Bilodeau, Caroline Duchaine
Software Mentions: 7
Published: almost 6 years ago

10.1186/s40851-021-00176-w

Integrative taxonomy resolves species identities within the Macrobiotus pallarii complex (Eutardigrada: Macrobiotidae)
Cited by: 18
Author(s): Daniel Stec, Matteo Vecchi, Magdalena Dudziak, Paul Bartels, Sara Calhim, Łukasz Michalczyk
Software Mentions: 7
Published: about 5 years ago

10.1007/s00572-020-01001-6

Phosphate availability and ectomycorrhizal symbiosis with Pinus sylvestris have independent effects on the Paxillus involutus transcriptome
Cited by: 6
Author(s): Christina Paparokidou, Jonathan R. Leake, David J. Beerling, Stephen A. Rolfe
Software Mentions: 7
Published: almost 6 years ago

10.1186/s40168-016-0167-0

Microbial succession in an inflated lunar/Mars analog habitat during a 30-day human occupation
Cited by: 28
Author(s): Teresa Mayer, Adriana Blachowicz, Alexander J. Probst, Parag Vaishampayan, Aleksandra Checinska, Tiffany M. Swarmer, Pablo de León, Kasthuri Venkateswaran
Software Mentions: 7
Published: about 10 years ago

10.1128/mSystems.00510-21

Dysbiosis of the Urinary Bladder Microbiome in Cats with Chronic Kidney Disease
Cited by: 5
Author(s): Younjung Kim, Maura Carrai, Marcus H. Y. Leung, Jaime Chin, Jun Li, Patrick K. H. Lee, Julia A. Beatty, Dirk U. Pfeiffer, Vanessa R. Barrs
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-017-15220-z

Captive bottlenose dolphins and killer whales harbor a species-specific skin microbiota that varies among individuals
Cited by: 28
Author(s): Marlène Chiarello, Sébastien Villéger, Corinne Bouvier, Jean‐Christophe Auguet, Thierry Bouvier
Software Mentions: 7
Published: almost 9 years ago

10.1007/s11274-019-2737-3

The vaginal microbial communities of healthy expectant Brazilian mothers and its correlation with the newborn’s gut colonization
Cited by: 15
Author(s): Priscila Caroline Thiago Dobbler, Volker Mai, Renato S. Procianoy, Rita de Cássia dos Santos Silveira, Andrea Corso, Luiz Fernando Würdig Roesch
Software Mentions: 7
Published: almost 7 years ago

10.3390/v13081614

The Repressor C Protein, Pf4r, Controls Superinfection of Pseudomonas aeruginosa PAO1 by the Pf4 Filamentous Phage and Regulates Host Gene Expression
Cited by: 7
Author(s): Muhammad Hafiz Ismail, Katharine A. Michie, Yu Fen Goh, Parisa Noorian, Staffan Kjelleberg, Iain G. Duggin, Diane McDougald, Scott A. Rice
Software Mentions: 7
Published: about 5 years ago

10.3389/fmicb.2019.00675

Influence of Urbanization on Epiphytic Bacterial Communities of the Platanus × hispanica Tree Leaves in a Biennial Study
Cited by: 29
Author(s): Jordan Espenshade, Sofie Thijs, S.W. Gawroński, Hannelore Bové, Nele Weyens, Jaco Vangronsveld
Software Mentions: 7
Published: over 7 years ago

10.3389/fmicb.2021.607289

The Relationship Between Microbiomes and Selective Regimes in the Sponge Genus Ircinia
Cited by: 5
Author(s): J. B. Kelly, David E. Carlson, Jun Siong Low, Tyler Rice, Robert Thacker
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2021.620458

Thermal Stress Interacts With Surgeonfish Feces to Increase Coral Susceptibility to Dysbiosis and Reduce Tissue Regeneration
Cited by: 8
Author(s): Leïla Ezzat, Sarah Merolla, Cody S. Clements, Katrina S. Munsterman, Kaitlyn Landfield, Colton Stensrud, Emily R. Schmeltzer, Deron E. Burkepile, Rebecca Vega Thurber
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2021.719486

Compositional Shift of Bacterial, Archaeal, and Fungal Communities Is Dependent on Trophic Lifestyles in Rice Paddy Soil
Cited by: 5
Author(s): Hyun Kim, Jongbum Jeon, Kiseok Keith Lee, Yong-Hwan Lee
Software Mentions: 7
Published: almost 5 years ago

10.1186/s40168-020-00869-y

Topography of the respiratory tract bacterial microbiota in cattle
Cited by: 36
Author(s): Christopher McMullen, Trevor W. Alexander, Renaud Léguillette, Matthew L. Workentine, Edouard Timsit
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0218636

Characterizing the postmortem human bone microbiome from surface-decomposed remains
Cited by: 23
Author(s): Alexandra L. Emmons, Amy Z. Mundorff, Sarah W. Keenan, Jonathan Davoren, Janna M. Andronowski, David Carter, Jennifer M. DeBruyn
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0233943

Effects of parity, blood progesterone, and non-steroidal anti-inflammatory treatment on the dynamics of the uterine microbiota of healthy postpartum dairy cows
Cited by: 17
Author(s): Osvaldo Bogado Pascottini, J. F. W. Sprícigo, Sabrina J. Van Schyndel, B. Mion, Joyce D. Rousseau, J. Scott Weese, S.J. LeBlanc
Software Mentions: 7
Published: over 5 years ago

10.1186/s40168-021-01025-w

Protists as main indicators and determinants of plant performance
Cited by: 51
Author(s): Sai Guo, Wu Xiong, Xinnan Hang, Zhilei Gao, Zixuan Jiao, Hongjun Liu, Yani Mo, Nan Zhang, George A. Kowalchuk, Rong Li, Stefan Geisen
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2021.645784

Soil Microsite Outweighs Cultivar Genotype Contribution to Brassica Rhizobacterial Community Structure
Cited by: 1
Author(s): Scott Klasek, Marcus T. Brock, Hilary G. Morrison, Cynthia Weinig, Loïs Maignien
Software Mentions: 7
Published: over 5 years ago

10.3390/pathogens10050603

Altered Nasal Microbiota Composition Associated with Development of Polyserositis by Mycoplasma hyorhinis
Cited by: 9
Author(s): Miguel Blanco-Fuertes, Florencia Correa‐Fiz, Lorenzo Fraile, Marina Sibila, Virginia Aragón
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-021-89950-6

Metabarcoding Malaise traps and soil eDNA reveals seasonal and local arthropod diversity shifts
Cited by: 15
Author(s): Ameli Kirse, Sarah J. Bourlat, Kathrin Langen, Vera G. Fonseca
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-89185-5

Cage and maternal effects on the bacterial communities of the murine gut
Cited by: 16
Author(s): Gurdeep Singh, Andy Brass, Sheena M. Cruickshank, Christopher G. Knight
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-87384-8

Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere
Cited by: 11
Author(s): Shinichi Yamazaki, Hossein Mardani-Korrani, Rumi Kaida, Kumiko Ochiai, Masaru Kobayashi, Atsushi J. Nagano, Yoshiharu Fujii, Akifumi Sugiyama, Yosuke Aoki
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2021.623799

Comparative Metagenomics Reveals Microbial Signatures of Sugarcane Phyllosphere in Organic Management
Cited by: 11
Author(s): Ahmad Nuruddin Khoiri, Supapon Cheevadhanarak, Jiraporn Jirakkakul, Sudarat Dulsawat, Peerada Prommeenate, Anuwat Tachaleat, Kanthida Kusonmano, Songsak Wattanachaisaereekul, Sawannee Sutheeworapong
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0128155

Can Newts Cope with the Heat? Disparate Thermoregulatory Strategies of Two Sympatric Species in Water
Cited by: 26
Author(s): Monika Balogová, Lumı́r Gvoždı́k
Software Mentions: 6
Published: over 11 years ago

10.3389/fmicb.2020.01405

Denosumab Regulates Gut Microbiota Composition and Cytokines in Dinitrobenzene Sulfonic Acid (DNBS)-Experimental Colitis
Cited by: 7
Author(s): Azin Khafipour, Nour Eissa, Peris M. Munyaka, Mohammad Fazle Rabbi, Kunal Kapoor, Laëtitia Kermarrec, Ehsan Khafipour, Çharles N. Bernstein, Jean–Eric Ghia
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2019.02560

Trophic Status Is Associated With Community Structure and Metabolic Potential of Planktonic Microbiota in Plateau Lakes
Cited by: 35
Author(s): Mohai Shen, Qi Li, Mei Ren, Yan Lin, Juanping Wang, Li Chen, Tao Li, Jindong Zhao
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmicb.2018.01401

Stoichiometric Shifts in Soil C:N:P Promote Bacterial Taxa Dominance, Maintain Biodiversity, and Deconstruct Community Assemblages
Cited by: 50
Author(s): Zachary T. Aanderud, Sabrina Saurey, Becky A. Ball, Diana H. Wall, John E. Barrett, Mario E. Muscarella, Natasha A. Griffin, Ross A. Virginia, Albert Barberán, Byron J. Adams
Software Mentions: 6
Published: about 8 years ago

10.3389/fmicb.2018.00294

Drought Legacy Effects on the Composition of Soil Fungal and Prokaryote Communities
Cited by: 108
Author(s): Annelein Meisner, Samuel Jacquiod, L. Basten Snoek, Freddy C. ten Hooven, Wim H. van der Putten
Software Mentions: 6
Published: over 8 years ago

10.1186/s40168-020-00962-2

Japanese quail (Coturnix japonica) as a novel model to study the relationship between the avian microbiome and microbial endocrinology-based host-microbe interactions
Cited by: 8
Author(s): Joshua M. Lyte, James Keane, Julia Eckenberger, Nicholas B. Anthony, Sandip Shrestha, Daya Marasini, Karrie M. Daniels, Valentina Caputi, Annie Donoghue, Mark Lyte
Software Mentions: 6
Published: over 5 years ago

10.1080/19490976.2021.1874815

Spatial analysis of gut microbiome reveals a distinct ecological niche associated with the mucus layer
Cited by: 33
Author(s): Kellyanne Duncan, Kelly Carey-Ewend, Shipra Vaishnava
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2018.02533

Cervicovaginal Fungi and Bacteria Associated With Cervical Intraepithelial Neoplasia and High-Risk Human Papillomavirus Infections in a Hispanic Population
Cited by: 57
Author(s): Filipa Godoy-Vitorino, Josefina Romaguera, Chunyu Zhao, Daniela Vargas-Robles, Gilmary Ortiz-Morales, Frances Vázquez-Sánchez, María M. Sánchez-Vázquez, Manuel de la Garza-Casillas, Magaly Martínez‐Ferrer, James R. White, Kyle Bittinger, Maria Gloria Domínguez-Bello, Martin J. Blaser
Software Mentions: 6
Published: almost 8 years ago

10.1186/s40168-019-0711-9

Bacterial alkylquinolone signaling contributes to structuring microbial communities in the ocean
Cited by: 22
Author(s): Kristen E. Whalen, Jamie W. Becker, Anna M. Schrecengost, Yongjie Gao, Nicole Giannetti, Elizabeth L. Harvey
Software Mentions: 6
Published: about 7 years ago

10.3389/fmicb.2021.642197

Infant Feeding Alters the Longitudinal Impact of Birth Mode on the Development of the Gut Microbiota in the First Year of Life
Cited by: 25
Author(s): Modupe Coker, Hannah E. Laue, Anne G. Hoen, Margaret Hilliard, Erika Dade, Zhigang Li, Thomas J. Palys, Hilary G. Morrison, Emily Baker, Margaret R. Karagas, Juliette C. Madan
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-018-20515-w

Exploring coral microbiome assemblages in the South China Sea
Cited by: 24
Author(s): Chunye Lin, Ren Mao Tian, Guowei Zhou, Haoya Tong, Yue Him Wong, Weipeng Zhang, Apple Pui Yi Chui, James Y. Xie, Jian‐Wen Qiu, Put O. Ang, Sheng Liu, Hui Huang, Pei‐Yuan Qian
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-018-21219-x

Interactions between predation and disturbances shape prey communities
Cited by: 22
Author(s): Canan Karakoç, Viktoriia Radchuk, Hauke Harms, Antonis Chatzinotas
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pntd.0003240

Noma Affected Children from Niger Have Distinct Oral Microbial Communities Based on High-Throughput Sequencing of 16S rRNA Gene Fragments
Cited by: 13
Author(s): Katrine Whiteson, Vladimir Lazarević, Manuela Tangomo-Bento, Myriam Girard, Heather Maughan, Didier Pittet, Patrice François, Jacques Schrenzel
Software Mentions: 6
Published: over 11 years ago

10.3389/fmicb.2021.643025

Specific Microbial Taxa and Functional Capacity Contribute to Chicken Abdominal Fat Deposition
Cited by: 18
Author(s): Hai Xiang, Jiankang Gan, Daoshu Zeng, Jing Li, Hui Yu, Huabin Zhao, Ying Yang, Shuo Tan, Gen Li, Chaowei Luo, Zhen Xie, Guiping Zhao, Hua Li
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pbio.3000534

The effects of soil phosphorus content on plant microbiota are driven by the plant phosphate starvation response
Cited by: 112
Author(s): Omri M. Finkel, Isai Salas-González, Gabriel Castrillo, Stijn Spaepen, Theresa F. Law, Paulo José Pereira Lima Teixeira, Corbin D. Jones, Jeffery L. Dangl
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmicb.2021.645362

Larval Diet Abundance Influences Size and Composition of the Midgut Microbiota of Aedes aegypti Mosquitoes
Cited by: 13
Author(s): Hannah J. MacLeod, George Dimopoulos, Sarah M. Short
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pbio.2005747

Vitellogenin-like A–associated shifts in social cue responsiveness regulate behavioral task specialization in an ant
Cited by: 57
Author(s): Philip Kohlmeier, Barbara Feldmeyer, Susanne Foitzik
Software Mentions: 6
Published: about 8 years ago

10.1007/s10886-020-01148-8

Phloem Metabolites of Prunus Sp. Rather than Infection with Candidatus Phytoplasma Prunorum Influence Feeding Behavior of Cacopsylla pruni Nymphs
Cited by: 9
Author(s): Jannicke Gallinger, Jürgen Gross
Software Mentions: 6
Published: over 6 years ago

10.1186/s40104-021-00580-4

Convergence of the turkey gut microbiota following cohabitation under commercial settings
Cited by: 1
Author(s): Elizabeth A. Miller, Brittanie Winfield, Bonnie Weber, Cristian Flores-Figueroa, Jeannette Muñoz-Aguayo, Jared Huisinga, Timothy J. Johnson
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2020.574137

Persistence of Suspected Probiotic Organisms in Preterm Infant Gut Microbiota Weeks After Probiotic Supplementation in the NICU
Cited by: 17
Author(s): Efrah I. Yousuf, Marília Sá Carvalho, Sara Dizzell, Stephanie Kim, Elizabeth Gunn, Jennifer Twiss, Lucy Giglia, Connie Stuart, Eileen K. Hutton, Katherine M. Morrison, Jennifer C. Stearns
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-021-82379-x

Evidence for strong environmental control on bacterial microbiomes of Antarctic springtails
Cited by: 5
Author(s): Chiara Leo, Francesco Nardi, Claudio Cucini, Francesco Frati, Peter Convey, James T. Weedon, Dick Roelofs, Antonio Carapelli
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2021.717990

Resistance and Vulnerability of Honeybee (Apis mellifera) Gut Bacteria to Commonly Used Pesticides
Cited by: 15
Author(s): Ana Cuesta-Maté, Justinn Renelies‐Hamilton, Per Kryger, Annette Bruun Jensen, Veronica M. Sinotte, Michael Poulsen
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-018-23989-w

A large-scale survey of the postmortem human microbiome, and its potential to provide insight into the living health condition
Cited by: 90
Author(s): Jennifer L. Pechal, Carl J. Schmidt, Heather R. Jordan, M. Eric Benbow
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-020-79130-3

Skin microbiome correlates with bioclimate and Batrachochytrium dendrobatidis infection intensity in Brazil’s Atlantic Forest treefrogs
Cited by: 14
Author(s): Katharina Ruthsatz, Mariana L. Lyra, Carolina Lambertini, Anat M. Belasen, Thomas S. Jenkinson, Domingos da Silva Leite, C. Guilherme Becker, Célio F. B. Haddad, Timothy Y. James, Kelly R. Zamudio, Luı́s Felipe Toledo, Miguel Vences
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.5715

Effects of agricultural management on phyllosphere fungal diversity in vineyards and the association with adjacent native forests
Cited by: 24
Author(s): Luis E. Castañeda, Tohru Miura, Roland Sánchez, Olga Barbosa
Software Mentions: 6
Published: almost 8 years ago

10.3389/fmicb.2018.00674

Nitrosospira sp. Govern Nitrous Oxide Emissions in a Tropical Soil Amended With Residues of Bioenergy Crop
Cited by: 38
Author(s): Késia Silva Lourenço, Noriko A. Cassman, Agata Pijl, Johannes A. van Veen, Heitor Cantarella, Eiko E. Kuramae
Software Mentions: 6
Published: over 8 years ago

10.1186/s40168-020-00836-7

Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer
Cited by: 46
Author(s): Ohana Y.A. Costa, Mattias de Hollander, Agata Pijl, Binbin Liu, Eiko E. Kuramae
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-018-27322-3

Costs of injury for scent signalling in a strepsirrhine primate
Cited by: 18
Author(s): Rachel L. Harris, Marylène Boulet, Kathleen E. Grogan, Christine M. Drea
Software Mentions: 6
Published: about 8 years ago

10.1038/s41598-020-79835-5

Local knowledge as a tool for prospecting wild food plants: experiences in northeastern Brazil
Cited by: 11
Author(s): Patrícia Muniz de Medeiros, Gabriela Maria Cota dos Santos, Déborah Monteiro Barbosa, Laílson César Andrade Gomes, Élida Monique da Costa Santos, Rafael Ricardo Vasconcelos da Silva
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-81150-6

Welwitschia: Phylogeography of a living fossil, diversified within a desert refuge
Cited by: 10
Author(s): Norbert Jürgens, Imke Oncken, Jens Oldeland, Felicitas Gunter, Barbara Rudolph
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.2206

Are the metabolomic responses to folivory of closely related plant species linked to macroevolutionary and plant-folivore coevolutionary processes?
Cited by: 14
Author(s): Albert Rivas‐Ubach, José A. Hódar, Jordi Sardans, Jennifer Kyle, Young Mo Kim, Michal Oravec, Otmar Urban, Alex Guenther, Josep Peñuelas
Software Mentions: 6
Published: about 10 years ago

10.1002/ece3.3343

Close and distant: Contrasting the metabolism of two closely related subspecies of Scots pine under the effects of folivory and summer drought
Cited by: 18
Author(s): Albert Rivas‐Ubach, Jordi Sardans, José A. Hódar, Joan García-Porta, Alex Guenther, Ljiljana Paša‐Tolić, Michal Oravec, Otmar Urban, Josep Peñuelas
Software Mentions: 6
Published: almost 9 years ago

10.1080/19490976.2021.1902771

The intestinal microbiota and metabolites in patients with anorexia nervosa
Cited by: 44
Author(s): Petra Procházková, Radka Roubalová, Jiří Dvořák, Jakub Kreisinger, Martin Hill, Helena Tlaskalová‐Hogenová, Petra Tomášová, Helena Pelantová, M Cermáková, Marek Kuzma, Josef Bulant, Martin Bilej, Kvido Smitka, Alena Lambertová, Petra Holanová, Hana Papežová
Software Mentions: 6
Published: over 5 years ago

10.3390/insects12020135

Joint Impacts of Drought and Habitat Fragmentation on Native Bee Assemblages in a California Biodiversity Hotspot
Cited by: 9
Author(s): Keng‐Lou James Hung, Sara Sandoval, John S. Ascher, David A. Holway
Software Mentions: 6
Published: over 5 years ago

10.1128/mSystems.00712-21

Activity-Based Cell Sorting Reveals Resistance of Functionally Degenerate <i>Nitrospira</i> during a Press Disturbance in Nitrifying Activated Sludge
Cited by: 4
Author(s): Maxwell B. W. Madill, Yaqian Luo, Pranav Sampara, Ryan M. Ziels
Software Mentions: 6
Published: almost 5 years ago

10.1128/mSystems.00540-20

Soil Bacterial Communities Exhibit Strong Biogeographic Patterns at Fine Taxonomic Resolution
Cited by: 29
Author(s): Sean K. Bay, Melodie A. McGeoch, Osnat Gillor, Nimrod Wieler, David J. Palmer, D. James Baker, Steven L. Chown, Chris Greening
Software Mentions: 6
Published: almost 6 years ago

10.3389/fnmol.2021.723317

Dynamic Changes in the Levels of Amyloid-β42 Species in the Brain and Periphery of APP/PS1 Mice and Their Significance for Alzheimer’s Disease
Cited by: 13
Author(s): Liding Zhang, Changwen Yang, Yanqing Li, Shiqi Niu, Xiaohan Liang, Zhihong Zhang, Qi Luo, Haiming Luo
Software Mentions: 6
Published: almost 5 years ago

10.3389/fmicb.2014.00541

Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland
Cited by: 71
Author(s): Antje Gittel, Jiří Bárta, Iva Kohoutová, Jörg Schnecker, Birgit Wild, Petr Čapek, Christina Kaiser, Vigdis Torsvik, Andreas Richter, Christa Schleper, Tim Urich
Software Mentions: 6
Published: almost 12 years ago

10.1186/s40168-021-01144-4

Trophic level drives the host microbiome of soil invertebrates at a continental scale
Cited by: 14
Author(s): Dong Zhu, Manuel Delgado‐Baquerizo, Jing Ding, Michael R. Gillings, Yong‐Guan Zhu
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-021-85460-7

Early socialization and environmental enrichment of lactating piglets affects the caecal microbiota and metabolomic response after weaning
Cited by: 7
Author(s): Mireia Saladrigas-García, Matilde D’Angelo, Heng-Lun Ko, Sara Traserra, Pau Nolis, Yuliaxis Ramayo-Caldas, Josep María Folch, P. Vergara, Pol Llonch, José Francisco Pérez, S. M. Martín‐Orúe
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0251231

Assessment of the gut bacterial microbiome and metabolome of girls and women with Rett Syndrome
Cited by: 6
Author(s): Santosh Thapa, Alamelu Venkatachalam, Nabeel Khan, Mohammed Naqvi, Miriam Balderas, Jessica K. Runge, Anthony M. Haag, Kathleen M. Hoch, Daniel G. Glaze, Ruth Ann Luna, Kathleen J. Motil
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms7120596

Dietary Saccharomyces cerevisiae boulardii CNCM I-1079 Positively Affects Performance and Intestinal Ecosystem in Broilers during a Campylobacter jejuni Infection
Cited by: 22
Author(s): Francesca Romana Massacci, Carmela Lovito, Silvia Tofani, Michele Tentellini, Domenica Anna Genovese, Alessia Arcangela Pia De Leo, Paola Papa, Chiara Francesca Magistrali, Elisabetta Manuali, Massimo Trabalza‐Marinucci, Livia Moscati, Claudio Forte
Software Mentions: 6
Published: over 6 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292